Cla97C11G214990 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C11G214990
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	50S ribosomal protein L18-like
Location	Cla97Chr11 : 10640350 .. 10641501 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGGTACAATTTCTTCACTCCCATCATACTCGATTCTCTATCTATTCCGGAGGATATCTTATTTACATTTTCAAGTTTATGATTTATCGATTGTTGACCACGAATTTCTCTATTGTTATTGTTCACTTTTGTTGGGAGAAGCAGAATTATTTGTGAGGCAGTTTAATCTGTGGTGGGTTTGCTGCTAGTAGTCAATAGTAAAGGAGAGATAAATAATTCAGGATAATTTTTCAGGATATGGTTTGAGAATTTGAAAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTTCCACATCTTTCAGATACTTCCGTTTCGACCTTCTATTTTAGTTGGGTGTGAAATTGAGGACAGAGCTTAGAAATTCGTGAGATAAATGGCCACAACGTTTTGAACCCATGACCACACGGTGAGAAGTTTCCTCTACGTTAACATCCTTGGACTCAGCTAGGTATATTAACAATTTTCCGACTTGAAATGTGGAATATTCAGGAAGATTTCCACTGAACCAAGAATAATACTTGCCTTTTTGAAGAAGAGGAAGAGATAACCCCCTTTTGGTGGCAATGTTATCATTGTTACACGTGGCTTTCGTGGTGGTTATTTTCCTTGGTTTGTATCATATTATTGTTTCAAAAGTTTGTTGCTAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAA

mRNA sequence

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAA

Coding sequence (CDS)

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAA

Protein sequence

MMAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAKLSSLDSGLKLLPGPVIMGLASHMDDRICAKLQPLAFLPFEARDMIEQGKQDVLTDSPIENALLI

Homology

[Close]

BLAST of Cla97C11G214990 vs. NCBI nr
Match: XP_022993255.1 (uncharacterized protein LOC111489327 [Cucurbita maxima])

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-15
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAF AISSSLPSCSSVPS+LSFQWPSTP    QKSSSLSW+SSFPH++ISRGS   SSNP
Sbjct: 1  MAFIAISSSLPSCSSVPSVLSFQWPSTPTILSQKSSSLSWASSFPHVTISRGSHVVSSNP 60

Query: 62 AHAKL 64
          AH K+
Sbjct: 61 AHDKV 65

[Close]

BLAST of Cla97C11G214990 vs. NCBI nr
Match: XP_008441144.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.4e-13
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 60

Query: 62 KLSSLDS 69
          K+  + S
Sbjct: 61 KVLFIQS 64

[Close]

BLAST of Cla97C11G214990 vs. NCBI nr
Match: XP_023521951.1 (uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQ---WPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTAISSS+PS +SV S+LS Q    P+TP QKSSSLSW+SSFP +S+SRGSPF SSNP
Sbjct: 1  MAFTAISSSMPSSASVRSILSSQCISTPTTPSQKSSSLSWASSFPSISLSRGSPFVSSNP 60

Query: 62 AHAKLSSLDS 69
          AHAK+  + S
Sbjct: 61 AHAKVLFIQS 70

[Close]

BLAST of Cla97C11G214990 vs. NCBI nr
Match: XP_023550056.1 (uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-12
Identity = 50/72 (69.44%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 2  MAFTAISSSLP--SCSSVPSLLSFQWPSTPL---QKSSSLSWSSSFPHLSISRGSPFASS 61
          MAFTAISSSLP  S SSVPS++SFQ PS+P    QKSSSLSW+SSFPH++ISRGSP  SS
Sbjct: 1  MAFTAISSSLPSSSSSSVPSVISFQCPSSPAILSQKSSSLSWASSFPHVTISRGSPVVSS 60

Query: 62 NPAHAKLSSLDS 69
          NPAH K+  + S
Sbjct: 61 NPAHDKVLFIQS 72

[Close]

BLAST of Cla97C11G214990 vs. NCBI nr
Match: XP_022152485.1 (uncharacterized protein LOC111020202 [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 5.9e-12
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQW---PSTPLQKSSSLSWSSSFPHLSISRGSPFASSNP 61
          MAFTA+SSSLPSCSSV S+LS QW   P+TP +K SSLSW SSFP++SIS GS   SSNP
Sbjct: 7  MAFTAVSSSLPSCSSVRSVLSSQWLSDPTTPSRKPSSLSWVSSFPNISISTGSSSISSNP 66

Query: 62 AHAKLSSLDS 69
          AHAK+  + S
Sbjct: 67 AHAKVLFIQS 76

[Close]

BLAST of Cla97C11G214990 vs. TrEMBL
Match: tr|A0A1S3B2Q8|A0A1S3B2Q8_CUCME (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.3e-14
Identity = 49/67 (73.13%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 60

Query: 62 KLSSLDS 69
          K+  + S
Sbjct: 61 KVLFIQS 64

The following BLAST results are available for this feature:

BLAST of Cla97C11G214990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993255.1	1.5e-15	78.46	uncharacterized protein LOC111489327 [Cucurbita maxima]	[more]
XP_008441144.1	1.4e-13	73.13	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
XP_023521951.1	1.6e-12	68.57	uncharacterized protein LOC111785799 [Cucurbita pepo subsp. pepo]	[more]
XP_023550056.1	1.6e-12	69.44	uncharacterized protein LOC111808358 [Cucurbita pepo subsp. pepo]	[more]
XP_022152485.1	5.9e-12	67.14	uncharacterized protein LOC111020202 [Momordica charantia]	[more]

BLAST of Cla97C11G214990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2Q8\|A0A1S3B2Q8_CUCME	9.3e-14	73.13	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103485371 PE=4 SV=1	[more]

BLAST of Cla97C11G214990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C11G214990 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C11G214990.1	Cla97C11G214990.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C11G214990	Cla011965	Watermelon (97103) v1	wmwmbB363
Cla97C11G214990	ClCG11G008650	Watermelon (Charleston Gray)	wcgwmbB067

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C11G214990	Silver-seed gourd	carwmbB0016
Cla97C11G214990	Cucumber (Gy14) v2	cgybwmbB099
Cla97C11G214990	Cucumber (Gy14) v2	cgybwmbB106
Cla97C11G214990	Cucumber (Gy14) v1	cgywmbB097
Cla97C11G214990	Cucurbita maxima (Rimu)	cmawmbB297
Cla97C11G214990	Cucurbita maxima (Rimu)	cmawmbB731
Cla97C11G214990	Cucurbita moschata (Rifu)	cmowmbB276
Cla97C11G214990	Cucurbita moschata (Rifu)	cmowmbB279
Cla97C11G214990	Cucurbita moschata (Rifu)	cmowmbB702
Cla97C11G214990	Wild cucumber (PI 183967)	cpiwmbB106
Cla97C11G214990	Wild cucumber (PI 183967)	cpiwmbB113
Cla97C11G214990	Cucumber (Chinese Long) v3	cucwmbB109
Cla97C11G214990	Cucumber (Chinese Long) v3	cucwmbB116
Cla97C11G214990	Cucumber (Chinese Long) v2	cuwmbB104
Cla97C11G214990	Cucumber (Chinese Long) v2	cuwmbB112
Cla97C11G214990	Bottle gourd (USVL1VR-Ls)	lsiwmbB077
Cla97C11G214990	Bottle gourd (USVL1VR-Ls)	lsiwmbB081
Cla97C11G214990	Melon (DHL92) v3.6.1	medwmbB264
Cla97C11G214990	Melon (DHL92) v3.6.1	medwmbB268
Cla97C11G214990	Melon (DHL92) v3.5.1	mewmbB279
Cla97C11G214990	Melon (DHL92) v3.5.1	mewmbB283
Cla97C11G214990	Wax gourd	wgowmbB293