ClCG11G008650 (gene) Watermelon (Charleston Gray)

Overview
NameClCG11G008650
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr11 : 12582579 .. 12584438 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGGTACAATTTCTTCACTCCCATCATACTCGATTCTCTATCTATTCCGGAGGATATCTTATTTACATTTTCAAGTTTATGATTTATCGATTGTTGACCACGAATTTCTCTATTGTTATTGTTCACTTTTGTTGGGAGAAGCAGAATTATTTGTGAGGCAGTTTAATCTGTGGTGGGTTTGCTGCTAGTAGTCAATAGTAAAGGAGAGATAAATAATTCAGGATAATTTTTCAGGATATGGTTTGAGAATTTGAAAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTTCCACATCTTTCAGATACTTCCGTTTCGACCTTCTATTTTAGTTGGGTGTGAAATTGAGGACAGAGCTTAGAAATTCGTGAGATAAATGGCCACAACGTTTTGAACCCATGACCACACGGTGAGAAGTTTCCTCTACGTTAACATCCTTGGACTCAGCTAGGTATATTAACAATTTTCCGACTTGAAATGTGGAATATTCAGGAAGATTTCCACTGAACCAAGAATAATACTTGCCTTTTTGAAGAAGAGGAAGAGATAACCCCCTTTTGGTGGCAATGTTATCATTGTTACACGTGGCTTTCGTGGTGGTTATTTTCCTTGGTTTGTATCATATTATTGTTTCAAAAGTTTGTTGCTAGCTGTCAAGCTTGGATTCAGGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGTGCTCACTGATTCTCCTATTGAAAATGCCTTGCTCATTTAAATTTTAGTTGCTATTTTGGCAAGGTCGATAATTTTAGTTGCTGATATTCATCTCTTGGATGTTCATGTAGAGAGTGAGGGAAATATGGCATAGGGCAAGATAGATAGGCTTTGGAGTCAACGTCAGAAGGAAGAGCAATTATGGCGGTGGAATGTTTAGTACCGGGACGGAAAATAGTTTTTAAGGTGGAAGAGGGTGGCACACAGCTAATGTTGATATTTGAGAAAGATCTCGGATTGTGATTGGTTGGTTGATCCAATGATGGAGAAGGGTAAGGGTCTTTCAAAGAGGGCGGATCATAGTTGTTGGTGAAGGCTGGGGAAGAAGCCATGTTGTTAATGGTTGGGTAACCTGTGGGTGGTGAGGGGGTAGGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

mRNA sequence

ATGGAGTCAATTCCCTCGCACCCTCACTTCCACAAAAAAGTCGTGGGTGGACGAATGAGCTGAATCTGAATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Coding sequence (CDS)

ATGATGGCCTTCACAGCAATATCTTCTTCACTGCCGTCTTGTTCTTCTGTGCCTTCACTTCTCTCCTTCCAGTGGCCATCAACTCCATTACAGAAATCCTCGTCTCTCTCGTGGTCATCTTCATTTCCGCATCTTAGCATATCCAGAGGCTCTCCTTTCGCCTCTTCCAATCCCGCGCATGCCAAGAATACTGCGTGCAGTCATTTTTGTGAGAATAGTCGTGCTGTTATTATGGCTGGAGAAGACAGAAATGACTGTTCCATGGTATACAGAGTTCTCAACTATTTTCTGCTTCGTTCCAGGTCAATTGACTTCATTGCAATTGTTGAGCAGTGTCCCAGTCTAAAACTCTTGCCGGGGCCTGTGATTATGGGACTCGCTAGCCACATGGATGATAGGATTTGTGCCAAGCTTCAACCTTTAGCTTTTCTTCCTTTTGAGGCCAGGGATATGATAGAACAAGGCAAACAAGATGGATTGTGGAGGTTAGTGGTGAAGAAGAAAGAGGGGAAGGGTAGCTTGGATGCAGGTGCAGGGGAGTTGTTGGATTCAGATGGGAGAGATGATGAAGATGAAGCTGTGGTTTTCTGCCGTGGAGATGAGAGAGGGGGAGGAGTAGGAGGTTTGACCAAGGGTGAAGTGTGGTTGTCAGGTGGGCTGAAGGTTGAGGAAGGGAAGGAGCTGTTGGGTGGAGAGGGAGTGGGAGGAAGAAGGGATGTTGTCTATGGAAAGGAGAAATGA

Protein sequence

MMAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHAKNTACSHFCENSRAVIMAGEDRNDCSMVYRVLNYFLLRSRSIDFIAIVEQCPSLKLLPGPVIMGLASHMDDRICAKLQPLAFLPFEARDMIEQGKQDGLWRLVVKKKEGKGSLDAGAGELLDSDGRDDEDEAVVFCRGDERGGGVGGLTKGEVWLSGGLKVEEGKELLGGEGVGGRRDVVYGKEK
Homology
[Close]
BLAST of ClCG11G008650 vs. NCBI nr
Match: gi|659081085|ref|XP_008441144.1| (PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 8.9e-16
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1 

Query: 2  MAFTAISSSLPSCSSVPSLLSFQWPSTPLQKSSSLSWSSSFPHLSISRGSPFASSNPAHA 61
          MAFTAI+SSLPSCSSV    S Q PSTPLQKSSSLSW+SSFPH++I RGSPFASSNP +A
Sbjct: 1  MAFTAIASSLPSCSSV---FSSQGPSTPLQKSSSLSWASSFPHVNIFRGSPFASSNPPYA 58

Query: 62 K 63
          K
Sbjct: 61 K 58

The following BLAST results are available for this feature:
BLAST of ClCG11G008650 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081085|ref|XP_008441144.1|8.9e-1678.69PREDICTED: uncharacterized protein LOC103485371 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG11G008650.1ClCG11G008650.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG11G008650Cla011965Watermelon (97103) v1wcgwmB104
ClCG11G008650Cla97C11G214990Watermelon (97103) v2wcgwmbB067
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG11G008650Cucurbita pepo (Zucchini)cpewcgB162
ClCG11G008650Cucurbita pepo (Zucchini)cpewcgB367
ClCG11G008650Bottle gourd (USVL1VR-Ls)lsiwcgB079
ClCG11G008650Bottle gourd (USVL1VR-Ls)lsiwcgB088
ClCG11G008650Cucumber (Gy14) v2cgybwcgB095
ClCG11G008650Melon (DHL92) v3.6.1medwcgB260
ClCG11G008650Silver-seed gourdcarwcgB0023
ClCG11G008650Silver-seed gourdcarwcgB0303
ClCG11G008650Cucumber (Chinese Long) v3cucwcgB113
ClCG11G008650Wax gourdwcgwgoB159
ClCG11G008650Cucumber (Gy14) v1cgywcgB097
ClCG11G008650Cucurbita maxima (Rimu)cmawcgB250
ClCG11G008650Cucurbita moschata (Rifu)cmowcgB238
ClCG11G008650Cucurbita moschata (Rifu)cmowcgB633
ClCG11G008650Wild cucumber (PI 183967)cpiwcgB103
ClCG11G008650Cucumber (Chinese Long) v2cuwcgB097
ClCG11G008650Melon (DHL92) v3.5.1mewcgB269