Cla97C10G197550 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G197550
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	tropomyosin-2 isoform X3
Location	Cla97Chr10 : 27341599 .. 27342528 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGCAAGATCAATGGTGATATCCGAAAATCAAAAGCTGTTTCTCTCCCTAATCAACGAATACGCGGCTGAAAAAATGAAAGATGGTATTTCTATGCAAGGATGACGTTAAATCCCTACAAAATGTTCTTTTCATAATGCTAACACTTCTTTTACTATATTCCGATCAGATTTTTTTTTTCCCCCTTTCTGAAAGGTGATTGTCTTGTTGAATATTCGCCCTTGTAGTAGATTTTATGTTGATTAGGAGGTATTTCTTTGCAAGAACAAATGTTAAAATCATAATTCTAGCAATTATTACTGTATTTGATCAGATTTGTTTTGGAAAGGCAGTCTGATTGAGTATTGGCGATTCTCCGGAATTTAGGTTTTATGAGGAGGTATTTATTTGCAAGAACAATGTTGAATCCCTGGCTAATATTATACTCGAAATGCTAGCAATCAGACGATTACCTTTAGGAAACAAGTTTGATCGAATCATATTCTTGATTGTACAGGAATTTATTTTGATAAGAACTGTGTAGCAGAATTATATTTATCATGAAATTTGACGATACAATTTCTTAATTCCTTCGTTTCTTGAAAACTAGAGGAAAGAATTGTTGTTTTGAAGAAGAGAGTTGAAGAACTGCGAAATGAGCTTGAAGCCACCAATGCGGAACTCGAAAATGTCAAGCGCGCCAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTCGAATTGTCTTTGAATGAAACTTCAATTCAGACTCTCGAGGTTTTTATTTCTATTTCTCTTACATTTCACTTTTACAATTGCGTTACCATTAATTGTTCTTCTTGCTTCTTAAACTTAATTTATCCACTCCAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTATTGGATCTGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

mRNA sequence

ATGAGCGCAAGATCAATGGTGATATCCGAAAATCAAAAGCTGTTTCTCTCCCTAATCAACGAATACGCGGCTGAAAAAATGAAAGATGAGGAAAGAATTGTTGTTTTGAAGAAGAGAGTTGAAGAACTGCGAAATGAGCTTGAAGCCACCAATGCGGAACTCGAAAATGTCAAGCGCGCCAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTCGAATTGTCTTTGAATGAAACTTCAATTCAGACTCTCGAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTATTGGATCTGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

Coding sequence (CDS)

ATGAGCGCAAGATCAATGGTGATATCCGAAAATCAAAAGCTGTTTCTCTCCCTAATCAACGAATACGCGGCTGAAAAAATGAAAGATGAGGAAAGAATTGTTGTTTTGAAGAAGAGAGTTGAAGAACTGCGAAATGAGCTTGAAGCCACCAATGCGGAACTCGAAAATGTCAAGCGCGCCAAAGAAACCACTGAACAGGAACTTAAAGGCTGTGAAGTCGAATTGTCTTTGAATGAAACTTCAATTCAGACTCTCGAGGCAAGGATTTCTGTGCTACAAGGTGAAATTGCATCTATTGGATCTGAGTTGGACTCTCTTAAGGTGCTGAGTTGA

Protein sequence

MSARSMVISENQKLFLSLINEYAAEKMKDEERIVVLKKRVEELRNELEATNAELENVKRAKETTEQELKGCEVELSLNETSIQTLEARISVLQGEIASIGSELDSLKVLS

Homology

The following BLAST results are available for this feature:

BLAST of Cla97C10G197550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cla97C10G197550 vs. TrEMBL


Match Name	E-value	Identity	Description

BLAST of Cla97C10G197550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G197550 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006302	double-strand break repair
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G197550.1	Cla97C10G197550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 26..74
None	No IPR available	GENE3D	G3DSA:1.20.5.340		coord: 7..108 e-value: 2.1E-6 score: 29.7
None	No IPR available	PANTHER	PTHR36001	FAMILY NOT NAMED	coord: 7..107
None	No IPR available	SUPERFAMILY	SSF57997	Tropomyosin	coord: 28..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G197550	Cla017043	Watermelon (97103) v1	wmwmbB051
Cla97C10G197550	Csa3G829020	Cucumber (Chinese Long) v2	cuwmbB186
Cla97C10G197550	ClCG10G014670	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G197550	CSPI03G39430	Wild cucumber (PI 183967)	cpiwmbB189
Cla97C10G197550	Cucsa.339260	Cucumber (Gy14) v1	cgywmbB582
Cla97C10G197550	CmaCh14G006190	Cucurbita maxima (Rimu)	cmawmbB249
Cla97C10G197550	CmaCh11G010500	Cucurbita maxima (Rimu)	cmawmbB095
Cla97C10G197550	CmoCh11G010730	Cucurbita moschata (Rifu)	cmowmbB084
Cla97C10G197550	CmoCh14G006280	Cucurbita moschata (Rifu)	cmowmbB230
Cla97C10G197550	Lsi03G014410	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G197550	MELO3C030968.2	Melon (DHL92) v3.6.1	medwmbB305
Cla97C10G197550	Carg22916	Silver-seed gourd	carwmbB0215
Cla97C10G197550	Carg09757	Silver-seed gourd	carwmbB0456
Cla97C10G197550	CsaV3_3G041890	Cucumber (Chinese Long) v3	cucwmbB187
Cla97C10G197550	Bhi11G002546	Wax gourd	wgowmbB015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G197550	Watermelon (97103) v2	wmbwmbB061
Cla97C10G197550	Cucumber (Gy14) v2	cgybwmbB178
Cla97C10G197550	Cucumber (Gy14) v1	cgywmbB119
Cla97C10G197550	Cucurbita maxima (Rimu)	cmawmbB217
Cla97C10G197550	Cucurbita maxima (Rimu)	cmawmbB406
Cla97C10G197550	Cucurbita maxima (Rimu)	cmawmbB714
Cla97C10G197550	Cucurbita moschata (Rifu)	cmowmbB201
Cla97C10G197550	Cucurbita moschata (Rifu)	cmowmbB685
Cla97C10G197550	Wild cucumber (PI 183967)	cpiwmbB017
Cla97C10G197550	Cucumber (Chinese Long) v3	cucwmbB016
Cla97C10G197550	Cucumber (Chinese Long) v2	cuwmbB017
Cla97C10G197550	Bottle gourd (USVL1VR-Ls)	lsiwmbB167
Cla97C10G197550	Melon (DHL92) v3.5.1	mewmbB316
Cla97C10G197550	Watermelon (Charleston Gray)	wcgwmbB008
Cla97C10G197550	Watermelon (97103) v1	wmwmbB012
Cla97C10G197550	Wax gourd	wgowmbB114