Carg22916 (gene) Silver-seed gourd

NameCarg22916
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptioncingulin-like
LocationCucurbita_argyrosperma_scaffold_124 : 322924 .. 324964 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACTTCGATCTGAGCTTGAAGCGGCCAATGCTGACCTTGAAAACGTCAAGCAAACCAAAGAAGCCACTGAACAGGAGCTTAAAGGCTGTGAAGTCGAATTGTCTCTGAATGAAACTTCAATTAAGACTCTCGAGGTTTTATTTTCTATTTCTCTTACATTTCACTCTACAGTTGTGTCACCATTAATTGATCTTTTTCCTTCTTAAATCTAATTTATCGACTCCAGACGAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGGTCTGAGTTAGACTCTCTTAAGGTGCTAAGATGATACTTAGAGTTCTGTATTTGTTATATTGAATCTGCCTTACATTTCTATTCTCACATTCTCTTTATTCGCTTAAAAAACATACTGGGATCTGGAATACGGTCGTTCGATCATAAAAGTGTGAAGGAGGAGCCGCAAGGTTGAAAATCGTCTCTCTTTTGTGATTTACAGCATATTAGAATAGTATGAAATTCATCTATTTTACAGAAGTATATAATTCAATGGCTTAAGAACACAGTGAAAGTGATGAGATCTTATTGACCATGCAGGAACCAGTTTCTCGATCACATGTCAGAGCTTGATGAAAAAATCAGGTCCGTTTTTTGTATTTTAATGCAAGCAACTTGCACTATGCATGCCTGTACATATGCTTCCCTTTGGGCTTGATAGTTTTCAACTAGGACCTGTTTGGAAACTGCTCTCAAAATAGTTTTGTTGTTATTATTAAAGTTGTTAAATTCTGAAAGCTAAATGTAGCACATTCTACTTCTAAATTCGTTTCTTCTTCATTTTTTGTTTTTCTTTCCTTGCTTAATCTCTGTAGCTGTCGAGTCGGATACTCTTAACCTTAAAGGCACTATTATCATCATTATTGACCCAGTATTTGGGTAAAATAATGTTCAAGTGCCTGTCGTTATAATGCTTCTTTCTGTAATAAAGCTGTTACTCGTTACAAGTTATTATTTCTGTTTTTAAGAATACGTTTTATCTCAAAGGGCCAAATAAATGTCTATTCTTAAGATTTTGCCTCCCATATTGAAAGCTCTAGCATGACAAATTTCTTACAGGAATGGACATAGATTTTGTCTCTTGTAAATATTCGAACAATTTGTTCTTAAATATGTAAACGGTGCGCAATTAGTAATATTGTAAGGCTATATTCCATTAACTTTCTTAATGAAACACAGGAAATTTCAATATCAACTGGACATAAAGAAAACTGGTATAGTTCCTGATGGAGATGCTACAGGTGAGTCAATGGTTTCTGTTCCAGCGTTATGATAATCTTCCCTTTTTTGCATTTTGTTATAGTCAATTCCATCTTGTTTTAATTGCTGAAAATGACACCTGAGATGATGTCGTGATTGTGAGCAACTTCTCGATCCATATTCTTTGTTTGTTTCAAATTACATTCTACCTCGAATATAGTTCAAATACGAGGCTTCTGTCTATGCAAAATTGAATGCCTTGGACTCCTTGCAGAAGAATCCCAAGAACTGGCGGGAGATGATACGAAAACTTCTGAGTCTGTTGAGGACAGGCTTATCAAAGTAATAACTCAAATAACCAATGAAGACGATGCCTACCTATTAGAAGAACAAATGAAAAATCAGGTAAAAAAACAGTGCTTCCAAATATTAGGAAGAAACCTACCTACTTTTATTTCCCGTGTATATGCTTTAAATTTTGTTGTCAACAAATGGGCCATCAATCAAAATCAAGAAAAGAAAATGGAAGTTGTAAATCAATAGGAAAAATGACATTTTCAACAGGTTATACATCCTGCCTTAATTTAAATTCATCTTCTCTCTCTTTCTTTCAGTGAAACTATATTCTTAAATGATAATATGGAATGATTGAATTTGCAGAATCGGCAAATGTCGATTAATCTAGAGAAAAGGAAGGCTGCAATGGCGATGATGCAGAAAGGAACAACAAAATCGGGAGATTTGACTAGATATCCTTCACAAATAAACTACTACACTTTCGACTTAACTGATTATTTTAATTTCTGA

mRNA sequence

ATGGAAGAACTTCGATCTGAGCTTGAAGCGGCCAATGCTGACCTTGAAAACGTCAAGCAAACCAAAGAAGCCACTGAACAGGAGCTTAAAGGCTGTGAAGTCGAATTGTCTCTGAATGAAACTTCAATTAAGACTCTCGAGACGAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGGTCTGAGTTAGACTCTCTTAAGTGTGAAGGAGGAGCCGCAAGGAACCAGTTTCTCGATCACATGTCAGAGCTTGATGAAAAAATCAGGAAATTTCAATATCAACTGGACATAAAGAAAACTGGTATAGTTCCTGATGGAGATGCTACAGAAGAATCCCAAGAACTGGCGGGAGATGATACGAAAACTTCTGAGTCTGTTGAGGACAGGCTTATCAAAGTAATAACTCAAATAACCAATGAAGACGATGCCTACCTATTAGAAGAACAAATGAAAAATCAGAATCGGCAAATGTCGATTAATCTAGAGAAAAGGAAGGCTGCAATGGCGATGATGCAGAAAGGAACAACAAAATCGGGAGATTTGACTAGATATCCTTCACAAATAAACTACTACACTTTCGACTTAACTGATTATTTTAATTTCTGA

Coding sequence (CDS)

ATGGAAGAACTTCGATCTGAGCTTGAAGCGGCCAATGCTGACCTTGAAAACGTCAAGCAAACCAAAGAAGCCACTGAACAGGAGCTTAAAGGCTGTGAAGTCGAATTGTCTCTGAATGAAACTTCAATTAAGACTCTCGAGACGAGGATTTCTGTGCTACAAGGTGAAATTGCATCTGTTGGGTCTGAGTTAGACTCTCTTAAGTGTGAAGGAGGAGCCGCAAGGAACCAGTTTCTCGATCACATGTCAGAGCTTGATGAAAAAATCAGGAAATTTCAATATCAACTGGACATAAAGAAAACTGGTATAGTTCCTGATGGAGATGCTACAGAAGAATCCCAAGAACTGGCGGGAGATGATACGAAAACTTCTGAGTCTGTTGAGGACAGGCTTATCAAAGTAATAACTCAAATAACCAATGAAGACGATGCCTACCTATTAGAAGAACAAATGAAAAATCAGAATCGGCAAATGTCGATTAATCTAGAGAAAAGGAAGGCTGCAATGGCGATGATGCAGAAAGGAACAACAAAATCGGGAGATTTGACTAGATATCCTTCACAAATAAACTACTACACTTTCGACTTAACTGATTATTTTAATTTCTGA

Protein sequence

MEELRSELEAANADLENVKQTKEATEQELKGCEVELSLNETSIKTLETRISVLQGEIASVGSELDSLKCEGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVEDRLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQINYYTFDLTDYFNF
BLAST of Carg22916 vs. NCBI nr
Match: XP_022931131.1 (uncharacterized protein LOC111437393 isoform X2 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0

Query: 70  EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVED 129
           EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEES ELAGDDTKTSESVED
Sbjct: 118 EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESHELAGDDTKTSESVED 177

Query: 130 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 189
           RLIKVITQITNEDDAYLL+EQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLT   S+ 
Sbjct: 178 RLIKVITQITNEDDAYLLKEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTSSGSEG 237

Query: 190 NY 192
           +Y
Sbjct: 238 SY 239

BLAST of Carg22916 vs. NCBI nr
Match: XP_022931113.1 (uncharacterized protein LOC111437393 isoform X1 [Cucurbita moschata] >XP_022931123.1 uncharacterized protein LOC111437393 isoform X1 [Cucurbita moschata])

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0

Query: 70  EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVED 129
           EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEES ELAGDDTKTSESVED
Sbjct: 118 EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESHELAGDDTKTSESVED 177

Query: 130 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 189
           RLIKVITQITNEDDAYLL+EQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLT   S+ 
Sbjct: 178 RLIKVITQITNEDDAYLLKEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTSSGSEG 237

Query: 190 NY 192
           +Y
Sbjct: 238 SY 239

BLAST of Carg22916 vs. NCBI nr
Match: XP_023531912.1 (uncharacterized protein LOC111794033 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 9.4e-52
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0

Query: 70  EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVED 129
           EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEES ELAGDDTKTSESVED
Sbjct: 115 EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESHELAGDDTKTSESVED 174

Query: 130 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 189
           RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGT K GDLT   S+ 
Sbjct: 175 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTAKLGDLTSSGSEG 234

Query: 190 NY 192
           +Y
Sbjct: 235 SY 236

BLAST of Carg22916 vs. NCBI nr
Match: XP_023531910.1 (uncharacterized protein LOC111794033 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.0 bits (541), Expect = 9.4e-52
Identity = 113/122 (92.62%), Postives = 115/122 (94.26%), Query Frame = 0

Query: 70  EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVED 129
           EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEES ELAGDDTKTSESVED
Sbjct: 115 EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESHELAGDDTKTSESVED 174

Query: 130 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 189
           RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGT K GDLT   S+ 
Sbjct: 175 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTAKLGDLTSSGSEG 234

Query: 190 NY 192
           +Y
Sbjct: 235 SY 236

BLAST of Carg22916 vs. NCBI nr
Match: XP_022971356.1 (uncharacterized protein LOC111470104 isoform X1 [Cucurbita maxima] >XP_022971363.1 uncharacterized protein LOC111470104 isoform X1 [Cucurbita maxima])

HSP 1 Score: 203.0 bits (515), Expect = 9.7e-49
Identity = 108/114 (94.74%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 70  EGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSESVED 129
           EGGAARNQFLDHMSELDEKIRKFQYQL IK TGIVPDGDA EES ELAGDDTKTSESVED
Sbjct: 115 EGGAARNQFLDHMSELDEKIRKFQYQLYIKNTGIVPDGDAAEESHELAGDDTKTSESVED 174

Query: 130 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLT 184
           RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTK  DLT
Sbjct: 175 RLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKLEDLT 228

BLAST of Carg22916 vs. TrEMBL
Match: tr|A0A1S3B8U9|A0A1S3B8U9_CUCME (uncharacterized protein LOC103487040 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487040 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 69  CEGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSE-SV 128
           CE   + +Q ++H+  L++KIRKFQ +L +K  G +   +ATEES +   D+ K S  SV
Sbjct: 114 CEENFSSDQIINHLFALNKKIRKFQEELYMKNVGFLK--NATEESHQPEEDNNKNSSLSV 173

Query: 129 EDRLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTK 179
           E+RLI+VIT+IT+ ++  + EEQ+  ++R+  I LE+R+AAM MM KG T+
Sbjct: 174 EERLIRVITEITHGEEDCMTEEQILREDRETKIYLEQRRAAMLMMVKGQTE 222

BLAST of Carg22916 vs. TrEMBL
Match: tr|A0A1S3B8T2|A0A1S3B8T2_CUCME (uncharacterized protein LOC103487040 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487040 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 49/111 (44.14%), Postives = 76/111 (68.47%), Query Frame = 0

Query: 69  CEGGAARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTKTSE-SV 128
           CE   + +Q ++H+  L++KIRKFQ +L +K  G +   +ATEES +   D+ K S  SV
Sbjct: 114 CEENFSSDQIINHLFALNKKIRKFQEELYMKNVGFLK--NATEESHQPEEDNNKNSSLSV 173

Query: 129 EDRLIKVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTK 179
           E+RLI+VIT+IT+ ++  + EEQ+  ++R+  I LE+R+AAM MM KG T+
Sbjct: 174 EERLIRVITEITHGEEDCMTEEQILREDRETKIYLEQRRAAMLMMVKGQTE 222

BLAST of Carg22916 vs. TrEMBL
Match: tr|A0A0A0LG33|A0A0A0LG33_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829020 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0

Query: 77  QFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTK-TSESVEDRLIKVI 136
           + ++H+  L++KIRKFQ +L +K    +   +ATE+  E   D+ K +S+SVE+RLI+VI
Sbjct: 107 KIINHLFALNKKIRKFQEELYMKNVEFLK--NATEKPHEPEEDNNKISSQSVEERLIRVI 166

Query: 137 TQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYP 187
           TQIT  +D  + EEQ+  +NR+  I LE+R+AAM MM KG T      RYP
Sbjct: 167 TQITYGEDDCMTEEQILRENRETKIYLEQRRAAMLMMVKGQTDLEAAVRYP 215

BLAST of Carg22916 vs. TrEMBL
Match: tr|A0A2P5PW90|A0A2P5PW90_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD36577 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 39/117 (33.33%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 74  ARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTK-TSESVEDRLI 133
           +R++F+  M E + KIRKFQ  +          GDATEE  +   + T+ TS +++D+  
Sbjct: 108 SRDEFICQMLEFNTKIRKFQETIASGSENKNIIGDATEEDHKFVKEATEITSINIKDQFT 167

Query: 134 KVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 190
            V++QI NE++ YL E+ ++ Q +   I++E++   M ++ +      +LTRYP+QI
Sbjct: 168 HVVSQIANEEEEYLAEQNIQKQLQLELIDIERKVYLMDVITREAKALENLTRYPNQI 224

BLAST of Carg22916 vs. TrEMBL
Match: tr|A0A0D2Q4G2|A0A0D2Q4G2_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G258300 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.7e-06
Identity = 38/117 (32.48%), Postives = 69/117 (58.97%), Query Frame = 0

Query: 74  ARNQFLDHMSELDEKIRKFQYQLDIKKTGIVPDGDATEESQELAGDDTK-TSESVEDRLI 133
           +R++F+  M E + KIRKFQ  +          G+ATEE  +   + T+ TS +++D+  
Sbjct: 108 SRDEFICQMLEFNTKIRKFQETIASGSENKNIIGNATEEDHKFVKEATEITSINIKDQFT 167

Query: 134 KVITQITNEDDAYLLEEQMKNQNRQMSINLEKRKAAMAMMQKGTTKSGDLTRYPSQI 190
            V++QI NE++ YL E+ ++ Q +   I++E++   M ++ +      +LTRYP+QI
Sbjct: 168 HVVSQIANEEEEYLAEQNIQKQLQLELIDIERKVYLMDVITREAKALENLTRYPNQI 224

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022931131.11.4e-5293.44uncharacterized protein LOC111437393 isoform X2 [Cucurbita moschata][more]
XP_022931113.11.4e-5293.44uncharacterized protein LOC111437393 isoform X1 [Cucurbita moschata] >XP_0229311... [more]
XP_023531912.19.4e-5292.62uncharacterized protein LOC111794033 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_023531910.19.4e-5292.62uncharacterized protein LOC111794033 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022971356.19.7e-4994.74uncharacterized protein LOC111470104 isoform X1 [Cucurbita maxima] >XP_022971363... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3B8U9|A0A1S3B8U9_CUCME2.2e-1244.14uncharacterized protein LOC103487040 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3B8T2|A0A1S3B8T2_CUCME2.2e-1244.14uncharacterized protein LOC103487040 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A0A0LG33|A0A0A0LG33_CUCSA1.4e-1145.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G829020 PE=4 SV=1[more]
tr|A0A2P5PW90|A0A2P5PW90_GOSBA1.8e-0633.33Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_DD36577 PE=4 SV... [more]
tr|A0A0D2Q4G2|A0A0D2Q4G2_GOSRA6.7e-0632.48Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_001G258300 PE=4 ... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg22916-RACarg22916-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..35
NoneNo IPR availableGENE3DG3DSA:1.20.5.340coord: 1..101
e-value: 9.3E-6
score: 27.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availablePANTHERPTHR36001FAMILY NOT NAMEDcoord: 2..188