Cla97C10G192650 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G192650
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Hydroxyproline-rich glycoprotein family protein, putative
Location	Cla97Chr10 : 20492520 .. 20492897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTTCCAAGTTCTTGATCATTGCCTTCATGGCTACTTTGGCTCTTTCCAGCATCCACTTCGGCCAAGCTGCTCGCCATCTTTTGCAAACCACTTCCCCCTTGGTGCCAAACCTTCCGGTGATCCCAACCGGGATACCGCCATTGCCCGCCTTGCCAAACCCTACTACTCTTCCGAATTTACCACAACCCACATTGCCTAAACTTAACCTCCCTCCGCTTCCGAGCTCTCCGGTGAACATCCCGAGCGGGCTAGCGTTGCCACCGCTACCAACAATGGCACTTCCGAACTTTCCGTCAATCCCTACCATTCCAACATCATTTCCTTCCATCCCATTTTTATCTCCTCCTCCTGCAACTTCTTCTTCCCCCTAA

mRNA sequence

ATGGCTTCTTCCAAGTTCTTGATCATTGCCTTCATGGCTACTTTGGCTCTTTCCAGCATCCACTTCGGCCAAGCTGCTCGCCATCTTTTGCAAACCACTTCCCCCTTGGTGCCAAACCTTCCGGTGATCCCAACCGGGATACCGCCATTGCCCGCCTTGCCAAACCCTACTACTCTTCCGAATTTACCACAACCCACATTGCCTAAACTTAACCTCCCTCCGCTTCCGAGCTCTCCGGTGAACATCCCGAGCGGGCTAGCGTTGCCACCGCTACCAACAATGGCACTTCCGAACTTTCCGTCAATCCCTACCATTCCAACATCATTTCCTTCCATCCCATTTTTATCTCCTCCTCCTGCAACTTCTTCTTCCCCCTAA

Coding sequence (CDS)

ATGGCTTCTTCCAAGTTCTTGATCATTGCCTTCATGGCTACTTTGGCTCTTTCCAGCATCCACTTCGGCCAAGCTGCTCGCCATCTTTTGCAAACCACTTCCCCCTTGGTGCCAAACCTTCCGGTGATCCCAACCGGGATACCGCCATTGCCCGCCTTGCCAAACCCTACTACTCTTCCGAATTTACCACAACCCACATTGCCTAAACTTAACCTCCCTCCGCTTCCGAGCTCTCCGGTGAACATCCCGAGCGGGCTAGCGTTGCCACCGCTACCAACAATGGCACTTCCGAACTTTCCGTCAATCCCTACCATTCCAACATCATTTCCTTCCATCCCATTTTTATCTCCTCCTCCTGCAACTTCTTCTTCCCCCTAA

Protein sequence

MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPTGIPPLPALPNPTTLPNLPQPTLPKLNLPPLPSSPVNIPSGLALPPLPTMALPNFPSIPTIPTSFPSIPFLSPPPATSSSP

Homology

[Close]

BLAST of Cla97C10G192650 vs. NCBI nr
Match: XP_008462893.1 (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-14
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPTGIPP 50
          MASSKFLIIAFMATLALSSI+FGQAARHLLQTT PLVPNLP IPTGIPP
Sbjct: 1  MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPP 49

[Close]

BLAST of Cla97C10G192650 vs. NCBI nr
Match: KGN54597.1 (hypothetical protein Csa_4G374890 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-09
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPT 46
          MA+S+FLIIAF ATLALSSI+FG AARHL QTT PLVPNLP IPT
Sbjct: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 45

[Close]

BLAST of Cla97C10G192650 vs. NCBI nr
Match: XP_022149166.1 (proline-rich receptor-like protein kinase PERK2 [Momordica charantia])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 0


Query: 1  MASSKFLIIA-FMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPTGIP 49
          MASSKFLIIA FM  LALSS+   +AARHLLQT  P +PN PV+P G+P
Sbjct: 1  MASSKFLIIALFMVALALSSVDAARAARHLLQTAPPSLPNFPVVPMGLP 49

[Close]

BLAST of Cla97C10G192650 vs. NCBI nr
Match: XP_023552884.1 (protein PELPK1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.0 bits (136), Expect = 5.3e-05
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0


Query: 1  MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLV 38
          M SSKFLIIAFMATLALSSI  GQAARHLLQ T PL+
Sbjct: 1  MTSSKFLIIAFMATLALSSIDMGQAARHLLQITPPLL 37

[Close]

BLAST of Cla97C10G192650 vs. TrEMBL
Match: tr|A0A1S3CJJ1|A0A1S3CJJ1_CUCME (proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo OX=3656 GN=LOC103501166 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-14
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 0


Query: 1  MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPTGIPP 50
          MASSKFLIIAFMATLALSSI+FGQAARHLLQTT PLVPNLP IPTGIPP
Sbjct: 1  MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPP 49

[Close]

BLAST of Cla97C10G192650 vs. TrEMBL
Match: tr|A0A0A0L1Y3|A0A0A0L1Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374890 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.4e-09
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MASSKFLIIAFMATLALSSIHFGQAARHLLQTTSPLVPNLPVIPT 46
          MA+S+FLIIAF ATLALSSI+FG AARHL QTT PLVPNLP IPT
Sbjct: 1  MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPT 45

The following BLAST results are available for this feature:

BLAST of Cla97C10G192650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462893.1	2.2e-14	93.88	PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo]	[more]
KGN54597.1	3.6e-09	82.22	hypothetical protein Csa_4G374890 [Cucumis sativus]	[more]
XP_022149166.1	3.7e-06	67.35	proline-rich receptor-like protein kinase PERK2 [Momordica charantia]	[more]
XP_023552884.1	5.3e-05	83.78	protein PELPK1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C10G192650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CJJ1\|A0A1S3CJJ1_CUCME	1.4e-14	93.88	proline-rich receptor-like protein kinase PERK2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0L1Y3\|A0A0A0L1Y3_CUCSA	2.4e-09	82.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G374890 PE=4 SV=1	[more]

BLAST of Cla97C10G192650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G192650 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016301	kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G192650.1	Cla97C10G192650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 1..120
None	No IPR available	PANTHER	PTHR33088:SF5	SUBFAMILY NOT NAMED	coord: 1..120

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G192650	Cla006500	Watermelon (97103) v1	wmwmbB051
Cla97C10G192650	MELO3C024841	Melon (DHL92) v3.5.1	mewmbB464
Cla97C10G192650	ClCG10G009570	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G192650	MELO3C024841.2	Melon (DHL92) v3.6.1	medwmbB457
Cla97C10G192650	Bhi11G000862	Wax gourd	wgowmbB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G192650	Watermelon (97103) v2	wmbwmbB060
Cla97C10G192650	Silver-seed gourd	carwmbB0302
Cla97C10G192650	Silver-seed gourd	carwmbB0294
Cla97C10G192650	Silver-seed gourd	carwmbB0391
Cla97C10G192650	Cucumber (Gy14) v2	cgybwmbB491
Cla97C10G192650	Cucumber (Gy14) v1	cgywmbB393
Cla97C10G192650	Cucurbita maxima (Rimu)	cmawmbB332
Cla97C10G192650	Cucurbita maxima (Rimu)	cmawmbB524
Cla97C10G192650	Cucurbita maxima (Rimu)	cmawmbB713
Cla97C10G192650	Cucurbita moschata (Rifu)	cmowmbB316
Cla97C10G192650	Cucurbita moschata (Rifu)	cmowmbB505
Cla97C10G192650	Cucurbita moschata (Rifu)	cmowmbB684
Cla97C10G192650	Wild cucumber (PI 183967)	cpiwmbB542
Cla97C10G192650	Cucumber (Chinese Long) v3	cucwmbB537
Cla97C10G192650	Cucumber (Chinese Long) v2	cuwmbB277
Cla97C10G192650	Cucumber (Chinese Long) v2	cuwmbB518
Cla97C10G192650	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G192650	Melon (DHL92) v3.6.1	medwmbB160
Cla97C10G192650	Melon (DHL92) v3.5.1	mewmbB174
Cla97C10G192650	Watermelon (Charleston Gray)	wcgwmbB007