Cla97C10G186550 (gene) Watermelon (97103) v2

Overview
NameCla97C10G186550
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionvacuolar protein sorting-associated protein 55 homolog
LocationCla97Chr10 : 1984720 .. 1984963 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGTGCTATGACAGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTG

mRNA sequence

ATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTG

Coding sequence (CDS)

ATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTG

Protein sequence

MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Homology
[Close]
BLAST of Cla97C10G186550 vs. NCBI nr
Match: XP_022923424.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_022923425.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_023553141.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553142.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553143.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLS
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. NCBI nr
Match: XP_022965211.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965212.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965213.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965214.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima])

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-16
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLS
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. NCBI nr
Match: XP_022155500.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022155501.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-16
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLPGSLQAC SMGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Sbjct: 1  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. NCBI nr
Match: XP_004150170.1 (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >KGN55797.1 hypothetical protein Csa_3G016420 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-15
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. NCBI nr
Match: XP_008448742.1 (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_008448744.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_016900672.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo] >XP_016900673.1 PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-15
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Sbjct: 1  MADLPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TrEMBL
Match: tr|A0A0A0L5B3|A0A0A0L5B3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 8.1e-16
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TrEMBL
Match: tr|A0A1S3BJT4|A0A1S3BJT4_CUCME (vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 GN=LOC103490815 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.4e-15
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS
Sbjct: 1  MADLPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TrEMBL
Match: tr|M4E3B4|M4E3B4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-14
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TrEMBL
Match: tr|A0A0D3CDQ9|A0A0D3CDQ9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106295020 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.6e-14
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TrEMBL
Match: tr|A0A2C9U468|A0A2C9U468_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-13
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MADLPG ++ACL  GK+AFLAILVSGGI++QILACALYNNWWPMLS
Sbjct: 1  MADLPGYVRACLQSGKLAFLAILVSGGIILQILACALYNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. Swiss-Prot
Match: sp|Q9AST6|VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.4e-15
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLS
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TAIR10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-16
Identity = 37/46 (80.43%), Postives = 42/46 (91.30%), Query Frame = 0 

Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLS 47
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLS
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLS 46

[Close]
BLAST of Cla97C10G186550 vs. TAIR10
Match: AT3G11530.1 (Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 42.0 bits (97), Expect = 1.2e-04
Identity = 16/24 (66.67%), Postives = 20/24 (83.33%), Query Frame = 0 

Query: 23 LVSGGIVMQILACALYNNWWPMLS 47
          + S  I++QILACA+Y NWWPMLS
Sbjct: 1  MFSSSILLQILACAIYGNWWPMLS 24

The following BLAST results are available for this feature:
BLAST of Cla97C10G186550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923424.11.9e-1697.83vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_... [more]
XP_022965211.11.9e-1697.83vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_02... [more]
XP_022155500.12.5e-1697.83vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP... [more]
XP_004150170.11.2e-1595.65PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativ... [more]
XP_008448742.12.1e-1595.65PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]... [more]
BLAST of Cla97C10G186550 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L5B3|A0A0A0L5B3_CUCSA8.1e-1695.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=4 SV=1[more]
tr|A0A1S3BJT4|A0A1S3BJT4_CUCME1.4e-1595.65vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 G... [more]
tr|M4E3B4|M4E3B4_BRARP7.6e-1484.78Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
tr|A0A0D3CDQ9|A0A0D3CDQ9_BRAOL7.6e-1484.78Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10629502... [more]
tr|A0A2C9U468|A0A2C9U468_MANES1.7e-1382.61Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=4 SV=... [more]
BLAST of Cla97C10G186550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9AST6|VSP55_ARATH5.4e-1580.43Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O... [more]
BLAST of Cla97C10G186550 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G32410.13.0e-1680.43Vacuolar protein sorting 55 (VPS55) family protein[more]
AT3G11530.11.2e-0466.67Vacuolar protein sorting 55 (VPS55) family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007262VPS55
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C10G186550.1Cla97C10G186550.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007262Vacuolar protein sorting 55PFAMPF04133Vps55coord: 18..45
e-value: 1.4E-8
score: 34.6
IPR007262Vacuolar protein sorting 55PANTHERPTHR12050LEPTIN RECEPTOR-RELATEDcoord: 1..46
NoneNo IPR availablePANTHERPTHR12050:SF1VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOGcoord: 1..46

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C10G186550Csa3G016420Cucumber (Chinese Long) v2cuwmbB181
Cla97C10G186550MELO3C013876Melon (DHL92) v3.5.1mewmbB430
Cla97C10G186550ClCG10G001910Watermelon (Charleston Gray)wcgwmbB038
Cla97C10G186550ClCG09G012370Watermelon (Charleston Gray)wcgwmbB005
Cla97C10G186550CSPI03G02010Wild cucumber (PI 183967)cpiwmbB184
Cla97C10G186550Cucsa.321560Cucumber (Gy14) v1cgywmbB562
Cla97C10G186550Lsi05G000510Bottle gourd (USVL1VR-Ls)lsiwmbB324
Cla97C10G186550Lsi07G012310Bottle gourd (USVL1VR-Ls)lsiwmbB395
Cla97C10G186550MELO3C013876.2Melon (DHL92) v3.6.1medwmbB415
Cla97C10G186550Carg23231Silver-seed gourdcarwmbB0736
Cla97C10G186550CsaV3_3G002050Cucumber (Chinese Long) v3cucwmbB182
Cla97C10G186550Bhi11G000103Wax gourdwgowmbB017
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla97C10G186550Cla97C09G175200Watermelon (97103) v2wmbwmbB058
The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C10G186550Watermelon (97103) v2wmbwmbB054
Cla97C10G186550Silver-seed gourdcarwmbB0586
Cla97C10G186550Silver-seed gourdcarwmbB0646
Cla97C10G186550Silver-seed gourdcarwmbB0816
Cla97C10G186550Cucumber (Gy14) v2cgybwmbB174
Cla97C10G186550Cucumber (Gy14) v2cgybwmbB176
Cla97C10G186550Cucumber (Gy14) v1cgywmbB449
Cla97C10G186550Cucumber (Gy14) v1cgywmbB538
Cla97C10G186550Cucurbita maxima (Rimu)cmawmbB252
Cla97C10G186550Cucurbita maxima (Rimu)cmawmbB333
Cla97C10G186550Cucurbita maxima (Rimu)cmawmbB611
Cla97C10G186550Cucurbita maxima (Rimu)cmawmbB845
Cla97C10G186550Cucurbita moschata (Rifu)cmowmbB232
Cla97C10G186550Cucurbita moschata (Rifu)cmowmbB315
Cla97C10G186550Cucurbita moschata (Rifu)cmowmbB585
Cla97C10G186550Cucurbita moschata (Rifu)cmowmbB819
Cla97C10G186550Wild cucumber (PI 183967)cpiwmbB186
Cla97C10G186550Wild cucumber (PI 183967)cpiwmbB188
Cla97C10G186550Cucumber (Chinese Long) v3cucwmbB184
Cla97C10G186550Cucumber (Chinese Long) v3cucwmbB186
Cla97C10G186550Cucumber (Chinese Long) v2cuwmbB183
Cla97C10G186550Cucumber (Chinese Long) v2cuwmbB185
Cla97C10G186550Melon (DHL92) v3.6.1medwmbB307
Cla97C10G186550Melon (DHL92) v3.6.1medwmbB419
Cla97C10G186550Melon (DHL92) v3.5.1mewmbB318
Cla97C10G186550Melon (DHL92) v3.5.1mewmbB428
Cla97C10G186550Watermelon (Charleston Gray)wcgwmbB218
Cla97C10G186550Watermelon (97103) v1wmwmbB009
Cla97C10G186550Watermelon (97103) v1wmwmbB056
Cla97C10G186550Watermelon (97103) v1wmwmbB197
Cla97C10G186550Wax gourdwgowmbB239