ClCG10G001910 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG10G001910
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Vacuolar protein sorting-associated protein-like protein
Location	CG_Chr10 : 2130946 .. 2132877 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGAAAGAAAGATAGAAATGAGGATGAAAAGAGATTTGATGGAGAACATCTATTAAGTTATGCTTAATAAATACAAAAGCCTAAAAACAATTCACACCCTTCGGCTTCGACATCTTACAATCACCTTATTTGGTGTTATCTTCATTTGATTTCTACCGATTGTCCAATAATAATAATAATAATAATAATAGTGGGCTGAAACGCCGCCGTCCGTGATCGGAATCGGACTGCGAAGTCGGGGAAACGAGAAAGTTTCTTCACGAATCCCCATCAAAAGGTACCTGATCCTCACAATTTCTTTGCCTCTTAATCTCGTTTTCTGAGAGAATTCGGTATCATATCTGTCTGCAAAACCACTTGATTCTACTGTTACGAAACCCTAGTGCTGAAATTTTGATACTTTTTCTACCACTGCATAATATTATTTACGTTTGTTAGAAAAGAGGGTTGAGATTGAGAATCCCACCCTTACGGTTGAGAGGAAACAGGAATTGTTGTTATGGGAGGAGTTATTTCGATTTTCGTTGTTCATGAAGCATTTTAGATTTCTAAGAATAAGGCTAGCAATTCAGTTATGAATATTCATACATCACATTTATATTCACCATATTGGTTTGGTGATTTTGAGCATTCAATTTGAAGTTGGAAATTTTTTGTTACATTGGTTATTGGGGAAAATTATCCCACTATTGACTCCATTCTGCTAGTTTTACAATGTCACTGTAAATATGGGTGTTTGAGTAACAATGTAACTCAATGAAGAATCCTACATGAATTCTTTTGTATCGCTGTGTTAAGTTTAAGGACAGAGGAGTTGAATTCTTGTGGGAGGAGTTACTTCGATTTTCATTGTTCATGAAGCATTTCAGTTGTAAATGTTCATAAACCATATTTATATTCACTAGATTGGTTTGGTGATTTTGACGTTCGATTTGAAGCTGGAAATGTTTGCCATATTGGTTGTCAATATCAAAATTTTCAAGTCCCTTCTGCCAATTTTTACTCTGTCCTTGTGTAGATGGGTGTTTGAGTAACAATGCCACTCAATGAAGAATTATATAACTCAAAAATACCAATTTATATGTAAAACCGATGCACTTACGAAAATCAACTTTGTGTTCTTTGCCTCCCACTTATCCTCTTGTAGACTTCTCATTTGGAGTTCTTTTTTGTAGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGTGCTATGACAGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGGTATATGACTAAAATTTCTCCTGGATCCTCTTTTACCTTTTACAACATGACGTTTCTTTGCAGCTAAGTTTTTTTTATTTTTTTTTATTTCATATCTTATTTGCTGGACTTGCTATACTGATTTTATTTCTGCCTGTACTGTGGGTGTATGTTTTCCATCCACTTAACTTCTGTTTATATGCAGTATCTTTTAATAATGAGCTTTTTTAGTTACTTTGATTGAATTGCATGGCTAGCTAGAACTAGAAGTGCTTCTCATCTCCATTGTGCTCCACTTGAAACTCTCTTTCTAGTTTCTAGCATTTTTATTGGACATGACTCGCATAATGAAAGAGTAAGGGTTTTGAATTGTTCTTATACAACCAACCCCTCATCCAGAGATGGTTGAAAGGTTGAAATTCAAACCGTTGAATGATAACCAAAGGACAATCCATTTTATTTCCCTGTGTCTCTCTCCTTTTTTCTTTTCTTTTCTTTTTT

mRNA sequence

GGAGAAAGAAAGATAGAAATGAGGATGAAAAGAGATTTGATGGAGAACATCTATTAAGTTATGCTTAATAAATACAAAAGCCTAAAAACAATTCACACCCTTCGGCTTCGACATCTTACAATCACCTTATTTGGTGTTATCTTCATTTGATTTCTACCGATTGTCCAATAATAATAATAATAATAATAATAGTGGGCTGAAACGCCGCCGTCCGTGATCGGAATCGGACTGCGAAGTCGGGGAAACGAGAAAGTTTCTTCACGAATCCCCATCAAAAGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGGTATATGACTAAAATTTCTCCTGGATCCTCTTTTACCTTTTACAACATGACGTTTCTTTGCAGCTAAGTTTTTTTTATTTTTTTTTATTTCATATCTTATTTGCTGGACTTGCTATACTGATTTTATTTCTGCCTGTACTGTGGGTGTATGTTTTCCATCCACTTAACTTCTGTTTATATGCAGTATCTTTTAATAATGAGCTTTTTTAGTTACTTTGATTGAATTGCATGGCTAGCTAGAACTAGAAGTGCTTCTCATCTCCATTGTGCTCCACTTGAAACTCTCTTTCTAGTTTCTAGCATTTTTATTGGACATGACTCGCATAATGAAAGAGTAAGGGTTTTGAATTGTTCTTATACAACCAACCCCTCATCCAGAGATGGTTGAAAGGTTGAAATTCAAACCGTTGAATGATAACCAAAGGACAATCCATTTTATTTCCCTGTGTCTCTCTCCTTTTTTCTTTTCTTTTCTTTTTT

Coding sequence (CDS)

ATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTGGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGGTATATGA

Protein sequence

MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI

Homology

[Close]

BLAST of ClCG10G001910 vs. Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.6e-16
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLS I
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. TrEMBL
Match: A0A0A0L5B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.1e-17
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS I
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. TrEMBL
Match: A0A0D3CDQ9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. TrEMBL
Match: A0A067DSU1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034193mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSG 48
          MADLPG ++ACL  GK+AFLAILVSGGIV+QILACALYNNWWPML+G
Sbjct: 1  MADLPGYMRACLHTGKLAFLAILVSGGIVLQILACALYNNWWPMLTG 47

[Close]

BLAST of ClCG10G001910 vs. TrEMBL
Match: M4E3B4_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. TrEMBL
Match: A0A078EJH5_BRANA (BnaC05g24560D protein OS=Brassica napus GN=BnaC05g24560D PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. TAIR10
Match: AT1G32410.1 (AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein)

HSP 1 Score: 83.2 bits (204), Expect = 4.8e-17
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLS I
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: gi|449464906|ref|XP_004150170.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-16
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS I
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: gi|659095739|ref|XP_008448742.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-16
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLS I
Sbjct: 1  MADLPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVI 48

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: gi|1012126237|ref|XP_015963710.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Arachis duranensis])

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MADLPG L++CLSMGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADLPGYLRSCLSMGKLAFLAILVSGGIVLQILACALYNNWWPMLSAI 48

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: gi|1021516096|ref|XP_016201526.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Arachis ipaensis])

HSP 1 Score: 91.3 bits (225), Expect = 5.0e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MADLPG L++CLSMGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADLPGYLRSCLSMGKLAFLAILVSGGIVLQILACALYNNWWPMLSAI 48

[Close]

BLAST of ClCG10G001910 vs. NCBI nr
Match: gi|922495185|ref|XP_013586228.1| (PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Brassica oleracea var. oleracea])

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-15
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSGI 49
          MAD+P  L+ACL MGK+AFLAILVSGGIV+QILACALYNNWWPMLS I
Sbjct: 1  MADIPRHLRACLDMGKIAFLAILVSGGIVLQILACALYNNWWPMLSVI 48

The following BLAST results are available for this feature:

BLAST of ClCG10G001910 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VSP55_ARATH	8.6e-16	79.17	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana G...	[more]

BLAST of ClCG10G001910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5B3_CUCSA	7.1e-17	93.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G016420 PE=4 SV=1	[more]
A0A0D3CDQ9_BRAOL	6.6e-15	83.33	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
A0A067DSU1_CITSI	6.6e-15	82.98	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034193mg PE=4 SV=1	[more]
M4E3B4_BRARP	6.6e-15	83.33	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A078EJH5_BRANA	6.6e-15	83.33	BnaC05g24560D protein OS=Brassica napus GN=BnaC05g24560D PE=4 SV=1	[more]

BLAST of ClCG10G001910 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32410.1	4.8e-17	79.17	Vacuolar protein sorting 55 (VPS55) family protein	[more]

BLAST of ClCG10G001910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464906\|ref\|XP_004150170.1\|	1.0e-16	93.75	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis sativ...	[more]
gi\|659095739\|ref\|XP_008448742.1\|	1.7e-16	93.75	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Cucumis melo]	[more]
gi\|1012126237\|ref\|XP_015963710.1\|	5.0e-16	87.50	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Arachis duran...	[more]
gi\|1021516096\|ref\|XP_016201526.1\|	5.0e-16	87.50	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Arachis ipaen...	[more]
gi\|922495185\|ref\|XP_013586228.1\|	9.5e-15	83.33	PREDICTED: vacuolar protein sorting-associated protein 55 homolog [Brassica oler...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007262	VPS55

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005773	vacuole
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG10G001910.1	ClCG10G001910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vacuolar protein sorting 55	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 5..48 score: 3.8
IPR007262	Vacuolar protein sorting 55	PFAM	PF04133	Vps55	coord: 18..47 score: 7.
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 5..48 score: 3.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG10G001910	Csa3G016420	Cucumber (Chinese Long) v2	cuwcgB189
ClCG10G001910	MELO3C013876	Melon (DHL92) v3.5.1	mewcgB415
ClCG10G001910	Cla97C10G186550	Watermelon (97103) v2	wcgwmbB038
ClCG10G001910	Cla97C09G175200	Watermelon (97103) v2	wcgwmbB053
ClCG10G001910	Bhi11G000103	Wax gourd	wcgwgoB095
ClCG10G001910	CSPI03G02010	Wild cucumber (PI 183967)	cpiwcgB190
ClCG10G001910	Cucsa.321560	Cucumber (Gy14) v1	cgywcgB556
ClCG10G001910	Lsi07G012310	Bottle gourd (USVL1VR-Ls)	lsiwcgB389
ClCG10G001910	Lsi05G000510	Bottle gourd (USVL1VR-Ls)	lsiwcgB320
ClCG10G001910	Cp4.1LG14g08940	Cucurbita pepo (Zucchini)	cpewcgB189
ClCG10G001910	MELO3C013876.2	Melon (DHL92) v3.6.1	medwcgB401
ClCG10G001910	Carg23231	Silver-seed gourd	carwcgB0683
ClCG10G001910	CsaV3_3G002050	Cucumber (Chinese Long) v3	cucwcgB194

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG10G001910	ClCG09G012370	Watermelon (Charleston Gray)	wcgwcgB003

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG10G001910	Cucumber (Chinese Long) v3	cucwcgB196
ClCG10G001910	Wax gourd	wcgwgoB114
ClCG10G001910	Watermelon (Charleston Gray)	wcgwcgB052
ClCG10G001910	Cucumber (Gy14) v1	cgywcgB535
ClCG10G001910	Cucurbita maxima (Rimu)	cmawcgB281
ClCG10G001910	Cucurbita maxima (Rimu)	cmawcgB515
ClCG10G001910	Cucurbita maxima (Rimu)	cmawcgB727
ClCG10G001910	Cucurbita moschata (Rifu)	cmowcgB272
ClCG10G001910	Cucurbita moschata (Rifu)	cmowcgB513
ClCG10G001910	Cucurbita moschata (Rifu)	cmowcgB730
ClCG10G001910	Wild cucumber (PI 183967)	cpiwcgB192
ClCG10G001910	Cucumber (Chinese Long) v2	cuwcgB191
ClCG10G001910	Melon (DHL92) v3.5.1	mewcgB317
ClCG10G001910	Watermelon (97103) v1	wcgwmB045
ClCG10G001910	Watermelon (97103) v1	wcgwmB056
ClCG10G001910	Cucurbita pepo (Zucchini)	cpewcgB004
ClCG10G001910	Cucurbita pepo (Zucchini)	cpewcgB631
ClCG10G001910	Cucumber (Gy14) v2	cgybwcgB174
ClCG10G001910	Cucumber (Gy14) v2	cgybwcgB176
ClCG10G001910	Melon (DHL92) v3.6.1	medwcgB312
ClCG10G001910	Silver-seed gourd	carwcgB0549
ClCG10G001910	Silver-seed gourd	carwcgB0754