Cla97C09G181840 (gene) Watermelon (97103) v2

Overview
NameCla97C09G181840
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr09 : 35201148 .. 35202704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTTGTAGAAGAAGCTTTGTGGATGTACCGCAAAGTTGGGGCGGCACTCGCAAAGCAGGCTTGTAATGTGCTTTTAGATGTCTTGGTTAAGACTTTGAGGTTTGAATTGTTGTGGAGGATTTATGAGGAAATGATTTCCAATGGGCTGTCTCCTGACGTTATCACTTATGGCATCTTAATCGATGGTTGCTGCCGTCAGGGAGATCTTTTAAGGGCACATGAGATGTTTGATGAAATGAGAGTGAAAGGAATTGAGCCAACCGTTGTAGTGTACACAATTCTTATTCGTGGCCTTTGCTCAGAGAACAAAATGGAGGAAGCGGAGAGTATGCATAGAGCGATGAGGGAAGTCGGGGTACTTCCAAACGTGTATACTTACAACACTTTGATGGATGGGTACTGCAAGTTGGCCAATGCAAAACAAGCTCTTAGATTGTATCAAGATATGCTGGGTGAAGGTTTAGTGCCAGACGATGTTACGTTTGGCATTTTAATTGATGGACTCTGCAAATATGGTGACATCAAGACTGCTCGTAATCTTTCTGTGAATATGGTAAAATTTAGTGTTACTCCCAGTATTGCTGTATATAACTCTTTGATTGATGGTTACTGTAAGGCAGGAGATGTTTCTGAAGCAATGGCTTTCTTTTTGGAGCTGGAAAGATTTAAAGTTTCGCCAGATGTCATTACATACAGTATACTTATTAGAGGTCTCTGTTCTGCTGGTCAAATTGAGGAAGCGGATAACATAATTGAGAAAATGATGAAAGAGGGAATTCCTGCAAACTCTGTTACATATAATTCATTAATTGATGGGTGCTGCAAAGAAGGCAACATGAAAAAGGCACTGGAAATATGCTCCCGAATGACTGAAAATGGTGTCGAACCAAATGTGATCACTTTCTCAATCCTGATTGATGGGTATTGCAAGATAAGGAACTTGCGAGCTGCTATGGGCATATATTCAGAGATGGTTATCAAAGGCCTTTCTCCGGATGTGGTTGCTTATACAGCTATGATAGACGGGCATTGCAAATATGGTAGCATGAAAGAGGCTCTTAAACTCTATAGTGATATGCTGGATAATGGCCTTACACCAAATTGTTACACTATCAGTTGCTTATTAGATGGGCTTTGTAAAGATGGCAGAATTTCAAATGCACTCGAACTTTTCTTGGAAAAGACTGGATTTCGGACTACCAGGTGCGATGTCGATGCGGGAGGAACCAAGCCTTCATTCATAAATCATGTCGTGTATACTGCTCTAATCCATGGATTGTGTGAGGATGGGCAAATTTTTAAGGCAGCAAACTTGTTTTCAGACATGAGATGTTACGGTTTGCAACCAGACGAAGTGATTTATGTAGTCATGTTACAAGGGTGCTTCCAAGTTAAACGCATTCTCAACGTGATGATGCTACATGCAGACATGTTAAAATTTGGTGTTATCCCAAATGCAACCATCTACTCGATATTATGTAAGGGTTATCGAGAGAGCGGATTTCTGAAATCAGCTCTGAATTGTTCCAAGGATCTTGAGGAACTACATTAA

mRNA sequence

ATGGGGCTTGTAGAAGAAGCTTTGTGGATGTACCGCAAAGTTGGGGCGGCACTCGCAAAGCAGGCTTGTAATGTGCTTTTAGATGTCTTGGTTAAGACTTTGAGGTTTGAATTGTTGTGGAGGATTTATGAGGAAATGATTTCCAATGGGCTGTCTCCTGACGTTATCACTTATGGCATCTTAATCGATGGTTGCTGCCGTCAGGGAGATCTTTTAAGGGCACATGAGATGTTTGATGAAATGAGAGTGAAAGGAATTGAGCCAACCGTTGTAGTGTACACAATTCTTATTCGTGGCCTTTGCTCAGAGAACAAAATGGAGGAAGCGGAGAGTATGCATAGAGCGATGAGGGAAGTCGGGGTACTTCCAAACGTGTATACTTACAACACTTTGATGGATGGGTACTGCAAGTTGGCCAATGCAAAACAAGCTCTTAGATTGTATCAAGATATGCTGGGTGAAGGTTTAGTGCCAGACGATGTTACGTTTGGCATTTTAATTGATGGACTCTGCAAATATGGTGACATCAAGACTGCTCGTAATCTTTCTGTGAATATGGTAAAATTTAGTGTTACTCCCAGTATTGCTGTATATAACTCTTTGATTGATGGTTACTGTAAGGCAGGAGATGTTTCTGAAGCAATGGCTTTCTTTTTGGAGCTGGAAAGATTTAAAGTTTCGCCAGATGTCATTACATACAGTATACTTATTAGAGGTCTCTGTTCTGCTGGTCAAATTGAGGAAGCGGATAACATAATTGAGAAAATGATGAAAGAGGGAATTCCTGCAAACTCTGTTACATATAATTCATTAATTGATGGGTGCTGCAAAGAAGGCAACATGAAAAAGGCACTGGAAATATGCTCCCGAATGACTGAAAATGGTGTCGAACCAAATGTGATCACTTTCTCAATCCTGATTGATGGGTATTGCAAGATAAGGAACTTGCGAGCTGCTATGGGCATATATTCAGAGATGGTTATCAAAGGCCTTTCTCCGGATGTGGTTGCTTATACAGCTATGATAGACGGGCATTGCAAATATGGTAGCATGAAAGAGGCTCTTAAACTCTATAGTGATATGCTGGATAATGGCCTTACACCAAATTGTTACACTATCAGTTGCTTATTAGATGGGCTTTGTAAAGATGGCAGAATTTCAAATGCACTCGAACTTTTCTTGGAAAAGACTGGATTTCGGACTACCAGGTGCGATGTCGATGCGGGAGGAACCAAGCCTTCATTCATAAATCATGTCGTGTATACTGCTCTAATCCATGGATTGTGTGAGGATGGGCAAATTTTTAAGGCAGCAAACTTGTTTTCAGACATGAGATGTTACGGTTTGCAACCAGACGAAGTGATTTATGTAGTCATGTTACAAGGGTGCTTCCAAGTTAAACGCATTCTCAACGTGATGATGCTACATGCAGACATGTTAAAATTTGGTGTTATCCCAAATGCAACCATCTACTCGATATTATGTAAGGGTTATCGAGAGAGCGGATTTCTGAAATCAGCTCTGAATTGTTCCAAGGATCTTGAGGAACTACATTAA

Coding sequence (CDS)

ATGGGGCTTGTAGAAGAAGCTTTGTGGATGTACCGCAAAGTTGGGGCGGCACTCGCAAAGCAGGCTTGTAATGTGCTTTTAGATGTCTTGGTTAAGACTTTGAGGTTTGAATTGTTGTGGAGGATTTATGAGGAAATGATTTCCAATGGGCTGTCTCCTGACGTTATCACTTATGGCATCTTAATCGATGGTTGCTGCCGTCAGGGAGATCTTTTAAGGGCACATGAGATGTTTGATGAAATGAGAGTGAAAGGAATTGAGCCAACCGTTGTAGTGTACACAATTCTTATTCGTGGCCTTTGCTCAGAGAACAAAATGGAGGAAGCGGAGAGTATGCATAGAGCGATGAGGGAAGTCGGGGTACTTCCAAACGTGTATACTTACAACACTTTGATGGATGGGTACTGCAAGTTGGCCAATGCAAAACAAGCTCTTAGATTGTATCAAGATATGCTGGGTGAAGGTTTAGTGCCAGACGATGTTACGTTTGGCATTTTAATTGATGGACTCTGCAAATATGGTGACATCAAGACTGCTCGTAATCTTTCTGTGAATATGGTAAAATTTAGTGTTACTCCCAGTATTGCTGTATATAACTCTTTGATTGATGGTTACTGTAAGGCAGGAGATGTTTCTGAAGCAATGGCTTTCTTTTTGGAGCTGGAAAGATTTAAAGTTTCGCCAGATGTCATTACATACAGTATACTTATTAGAGGTCTCTGTTCTGCTGGTCAAATTGAGGAAGCGGATAACATAATTGAGAAAATGATGAAAGAGGGAATTCCTGCAAACTCTGTTACATATAATTCATTAATTGATGGGTGCTGCAAAGAAGGCAACATGAAAAAGGCACTGGAAATATGCTCCCGAATGACTGAAAATGGTGTCGAACCAAATGTGATCACTTTCTCAATCCTGATTGATGGGTATTGCAAGATAAGGAACTTGCGAGCTGCTATGGGCATATATTCAGAGATGGTTATCAAAGGCCTTTCTCCGGATGTGGTTGCTTATACAGCTATGATAGACGGGCATTGCAAATATGGTAGCATGAAAGAGGCTCTTAAACTCTATAGTGATATGCTGGATAATGGCCTTACACCAAATTGTTACACTATCAGTTGCTTATTAGATGGGCTTTGTAAAGATGGCAGAATTTCAAATGCACTCGAACTTTTCTTGGAAAAGACTGGATTTCGGACTACCAGGTGCGATGTCGATGCGGGAGGAACCAAGCCTTCATTCATAAATCATGTCGTGTATACTGCTCTAATCCATGGATTGTGTGAGGATGGGCAAATTTTTAAGGCAGCAAACTTGTTTTCAGACATGAGATGTTACGGTTTGCAACCAGACGAAGTGATTTATGTAGTCATGTTACAAGGGTGCTTCCAAGTTAAACGCATTCTCAACGTGATGATGCTACATGCAGACATGTTAAAATTTGGTGTTATCCCAAATGCAACCATCTACTCGATATTATGTAAGGGTTATCGAGAGAGCGGATTTCTGAAATCAGCTCTGAATTGTTCCAAGGATCTTGAGGAACTACATTAA

Protein sequence

MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGILIDGCCRQGDLLRAHEMFDEMRVKGIEPTVVVYTILIRGLCSENKMEEAESMHRAMREVGVLPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDDVTFGILIDGLCKYGDIKTARNLSVNMVKFSVTPSIAVYNSLIDGYCKAGDVSEAMAFFLELERFKVSPDVITYSILIRGLCSAGQIEEADNIIEKMMKEGIPANSVTYNSLIDGCCKEGNMKKALEICSRMTENGVEPNVITFSILIDGYCKIRNLRAAMGIYSEMVIKGLSPDVVAYTAMIDGHCKYGSMKEALKLYSDMLDNGLTPNCYTISCLLDGLCKDGRISNALELFLEKTGFRTTRCDVDAGGTKPSFINHVVYTALIHGLCEDGQIFKAANLFSDMRCYGLQPDEVIYVVMLQGCFQVKRILNVMMLHADMLKFGVIPNATIYSILCKGYRESGFLKSALNCSKDLEELH
Homology
[Close]
BLAST of Cla97C09G181840 vs. NCBI nr
Match: XP_011655325.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Cucumis sativus] >XP_011655326.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Cucumis sativus] >XP_011655327.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Cucumis sativus] >XP_011655328.1 PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Cucumis sativus] >KGN51232.1 hypothetical protein Csa_5G496480 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 5.1e-25
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGAAL  QACNVLL VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 141 MELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 200

Query: 61  LIDGCCRQGDLLRA 75
           LIDGCCRQGDLLRA
Sbjct: 201 LIDGCCRQGDLLRA 214

[Close]
BLAST of Cla97C09G181840 vs. NCBI nr
Match: XP_016903046.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X3 [Cucumis melo])

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-24
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
          M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 1  MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 60

Query: 61 LIDGCCRQGDLL 73
          LIDGCCRQGDLL
Sbjct: 61 LIDGCCRQGDLL 72

[Close]
BLAST of Cla97C09G181840 vs. NCBI nr
Match: XP_016903045.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X2 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 130 MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 189

Query: 61  LIDGCCR 68
           LIDGCCR
Sbjct: 190 LIDGCCR 196

[Close]
BLAST of Cla97C09G181840 vs. NCBI nr
Match: XP_016903044.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X1 [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 7.6e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 141 MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 200

Query: 61  LIDGCCR 68
           LIDGCCR
Sbjct: 201 LIDGCCR 207

[Close]
BLAST of Cla97C09G181840 vs. NCBI nr
Match: XP_022959787.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g61400 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-20
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYG 60
           MGLV+EALWMYRKVG A+A+QACNVLLDVLVKT RFELLW IYEEM+SNGLSPDVITYG
Sbjct: 163 MGLVDEALWMYRKVGVAVARQACNVLLDVLVKTGRFELLWGIYEEMVSNGLSPDVITYG 221

[Close]
BLAST of Cla97C09G181840 vs. TrEMBL
Match: tr|A0A0A0KS30|A0A0A0KS30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496480 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.3e-25
Identity = 64/74 (86.49%), Postives = 65/74 (87.84%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGAAL  QACNVLL VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 141 MELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 200

Query: 61  LIDGCCRQGDLLRA 75
           LIDGCCRQGDLLRA
Sbjct: 201 LIDGCCRQGDLLRA 214

[Close]
BLAST of Cla97C09G181840 vs. TrEMBL
Match: tr|A0A1S4E486|A0A1S4E486_CUCME (pentatricopeptide repeat-containing protein At5g61400 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103501683 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-24
Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0 

Query: 1  MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
          M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 1  MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 60

Query: 61 LIDGCCRQGDLL 73
          LIDGCCRQGDLL
Sbjct: 61 LIDGCCRQGDLL 72

[Close]
BLAST of Cla97C09G181840 vs. TrEMBL
Match: tr|A0A1S4E4Z4|A0A1S4E4Z4_CUCME (pentatricopeptide repeat-containing protein At5g61400 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501683 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 130 MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 189

Query: 61  LIDGCCR 68
           LIDGCCR
Sbjct: 190 LIDGCCR 196

[Close]
BLAST of Cla97C09G181840 vs. TrEMBL
Match: tr|A0A1S4E494|A0A1S4E494_CUCME (pentatricopeptide repeat-containing protein At5g61400 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103501683 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-21
Identity = 56/67 (83.58%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           M LVEEAL MY KVGA L  QACNVLL+VLVKT RFELLWRIYEEMISNGLSP VIT+G 
Sbjct: 141 MELVEEALSMYHKVGATLTIQACNVLLNVLVKTGRFELLWRIYEEMISNGLSPSVITFGT 200

Query: 61  LIDGCCR 68
           LIDGCCR
Sbjct: 201 LIDGCCR 207

[Close]
BLAST of Cla97C09G181840 vs. TrEMBL
Match: tr|A0A1U8NIJ6|A0A1U8NIJ6_GOSHI (pentatricopeptide repeat-containing protein At5g61400-like OS=Gossypium hirsutum OX=3635 GN=LOC107948597 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-15
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           MGL+E+ALW+YR +      QACN LLD L+K  RF+ +W +Y+E++S G  P+V+TYG+
Sbjct: 136 MGLIEDALWVYRNIKTFPQMQACNALLDGLIKLGRFDSMWDLYKELLSRGFLPNVVTYGV 195

Query: 61  LIDGCCRQGDLLRA 75
           LI+ CC QGD+L+A
Sbjct: 196 LINCCCCQGDVLKA 209

[Close]
BLAST of Cla97C09G181840 vs. Swiss-Prot
Match: sp|Q9FLJ4|PP440_ARATH (Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana OX=3702 GN=At5g61400 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-08
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           MGL EEALW+ R++  +   +AC  +L+ LV+  RF+ +W  Y+ MIS GL PDV  Y +
Sbjct: 145 MGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFV 204

Query: 61  LIDGCCRQG 70
           L   C +QG
Sbjct: 205 LFQCCFKQG 213

[Close]
BLAST of Cla97C09G181840 vs. Swiss-Prot
Match: sp|Q9FIT7|PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 3.4e-04
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 2   GLVEEALWMY-RKVGAALAKQ--ACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITY 61
           G +EEA++++   +G  L  +   C VLLD L++  R +L W +Y+ M+   +  DV TY
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224

Query: 62  GILIDGCCRQGDL 72
            +LI   CR G++
Sbjct: 225 HMLIIAHCRAGNV 237

[Close]
BLAST of Cla97C09G181840 vs. TAIR10
Match: AT5G61400.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.2e-09
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 0 

Query: 1   MGLVEEALWMYRKVGAALAKQACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITYGI 60
           MGL EEALW+ R++  +   +AC  +L+ LV+  RF+ +W  Y+ MIS GL PDV  Y +
Sbjct: 145 MGLFEEALWVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFV 204

Query: 61  LIDGCCRQG 70
           L   C +QG
Sbjct: 205 LFQCCFKQG 213

[Close]
BLAST of Cla97C09G181840 vs. TAIR10
Match: AT5G61990.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-05
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0 

Query: 2   GLVEEALWMY-RKVGAALAKQ--ACNVLLDVLVKTLRFELLWRIYEEMISNGLSPDVITY 61
           G +EEA++++   +G  L  +   C VLLD L++  R +L W +Y+ M+   +  DV TY
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224

Query: 62  GILIDGCCRQGDL 72
            +LI   CR G++
Sbjct: 225 HMLIIAHCRAGNV 237

The following BLAST results are available for this feature:
BLAST of Cla97C09G181840 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011655325.15.1e-2586.49PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Cucumis sativu... [more]
XP_016903046.17.3e-2484.72PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X3 [Cuc... [more]
XP_016903045.17.6e-2183.58PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X2 [Cuc... [more]
XP_016903044.17.6e-2183.58PREDICTED: pentatricopeptide repeat-containing protein At5g61400 isoform X1 [Cuc... [more]
XP_022959787.12.2e-2088.14LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g61400 [Cucu... [more]
BLAST of Cla97C09G181840 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KS30|A0A0A0KS30_CUCSA3.3e-2586.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G496480 PE=4 SV=1[more]
tr|A0A1S4E486|A0A1S4E486_CUCME4.8e-2484.72pentatricopeptide repeat-containing protein At5g61400 isoform X3 OS=Cucumis melo... [more]
tr|A0A1S4E4Z4|A0A1S4E4Z4_CUCME5.0e-2183.58pentatricopeptide repeat-containing protein At5g61400 isoform X2 OS=Cucumis melo... [more]
tr|A0A1S4E494|A0A1S4E494_CUCME5.0e-2183.58pentatricopeptide repeat-containing protein At5g61400 isoform X1 OS=Cucumis melo... [more]
tr|A0A1U8NIJ6|A0A1U8NIJ6_GOSHI2.4e-1552.70pentatricopeptide repeat-containing protein At5g61400-like OS=Gossypium hirsutum... [more]
BLAST of Cla97C09G181840 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FLJ4|PP440_ARATH2.2e-0844.93Pentatricopeptide repeat-containing protein At5g61400 OS=Arabidopsis thaliana OX... [more]
sp|Q9FIT7|PP442_ARATH3.4e-0435.62Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
BLAST of Cla97C09G181840 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G61400.11.2e-0944.93Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G61990.11.9e-0535.62Pentatricopeptide repeat (PPR) superfamily protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C09G181840.1Cla97C09G181840.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 255..327
e-value: 6.3E-24
score: 86.5
coord: 114..185
e-value: 3.6E-22
score: 80.7
coord: 328..398
e-value: 5.9E-21
score: 76.8
coord: 186..254
e-value: 9.3E-23
score: 82.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 407..518
e-value: 6.7E-20
score: 73.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 1..111
e-value: 1.6E-27
score: 98.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 197..230
e-value: 1.3E-9
score: 35.6
coord: 419..453
e-value: 7.9E-8
score: 30.0
coord: 266..300
e-value: 6.2E-12
score: 42.9
coord: 126..159
e-value: 9.6E-10
score: 36.0
coord: 56..90
e-value: 6.9E-11
score: 39.6
coord: 22..55
e-value: 7.6E-6
score: 23.8
coord: 336..370
e-value: 4.0E-10
score: 37.2
coord: 161..194
e-value: 3.4E-4
score: 18.6
coord: 371..394
e-value: 0.0026
score: 15.8
coord: 231..264
e-value: 3.2E-9
score: 34.4
coord: 301..335
e-value: 4.0E-8
score: 31.0
coord: 91..125
e-value: 1.9E-8
score: 31.9
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 49..82
e-value: 1.2E-13
score: 50.4
coord: 84..117
e-value: 4.7E-10
score: 38.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 123..172
e-value: 6.8E-18
score: 64.5
coord: 417..463
e-value: 1.5E-11
score: 44.2
coord: 264..312
e-value: 4.7E-20
score: 71.4
coord: 333..382
e-value: 4.6E-19
score: 68.2
coord: 193..242
e-value: 4.2E-17
score: 62.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 334..368
score: 13.351
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 159..193
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 487..518
score: 6.292
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 19..53
score: 9.087
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 89..123
score: 11.926
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 264..298
score: 14.403
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 124..158
score: 13.307
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 54..88
score: 13.899
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 194..228
score: 12.496
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 299..333
score: 12.025
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 229..263
score: 12.825
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 417..451
score: 11.345
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 452..486
score: 8.955
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..403
score: 7.552
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 196..397
NoneNo IPR availablePANTHERPTHR24015:SF993SUBFAMILY NOT NAMEDcoord: 57..289
coord: 196..397
NoneNo IPR availablePANTHERPTHR24015:SF993SUBFAMILY NOT NAMEDcoord: 2..218
NoneNo IPR availablePANTHERPTHR24015:SF993SUBFAMILY NOT NAMEDcoord: 370..509
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 57..289
coord: 2..218
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 370..509
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 135..367

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C09G181840Cla004724Watermelon (97103) v1wmwmbB042
Cla97C09G181840Csa5G496480Cucumber (Chinese Long) v2cuwmbB407
Cla97C09G181840MELO3C025502Melon (DHL92) v3.5.1mewmbB038
Cla97C09G181840MELO3C003070Melon (DHL92) v3.5.1mewmbB558
Cla97C09G181840ClCG09G020450Watermelon (Charleston Gray)wcgwmbB035
Cla97C09G181840CSPI05G16960Wild cucumber (PI 183967)cpiwmbB428
Cla97C09G181840Cucsa.275720Cucumber (Gy14) v1cgywmbB481
Cla97C09G181840CmaCh04G026010Cucurbita maxima (Rimu)cmawmbB797
Cla97C09G181840CmoCh04G027220Cucurbita moschata (Rifu)cmowmbB772
Cla97C09G181840Lsi02G016960Bottle gourd (USVL1VR-Ls)lsiwmbB208
Cla97C09G181840MELO3C025502.2Melon (DHL92) v3.6.1medwmbB034
Cla97C09G181840Carg04537Silver-seed gourdcarwmbB0714
Cla97C09G181840CsaV3_5G025970Cucumber (Chinese Long) v3cucwmbB424
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C09G181840Watermelon (97103) v2wmbwmbB064
Cla97C09G181840Silver-seed gourdcarwmbB0279
Cla97C09G181840Cucumber (Gy14) v2cgybwmbB317
Cla97C09G181840Cucumber (Gy14) v2cgybwmbB389
Cla97C09G181840Cucumber (Gy14) v1cgywmbB064
Cla97C09G181840Cucurbita maxima (Rimu)cmawmbB322
Cla97C09G181840Cucurbita maxima (Rimu)cmawmbB909
Cla97C09G181840Cucurbita moschata (Rifu)cmowmbB305
Cla97C09G181840Cucurbita moschata (Rifu)cmowmbB879
Cla97C09G181840Bottle gourd (USVL1VR-Ls)lsiwmbB152
Cla97C09G181840Watermelon (Charleston Gray)wcgwmbB059
Cla97C09G181840Watermelon (97103) v1wmwmbB077
Cla97C09G181840Wax gourdwgowmbB157