Cla97C09G173650 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C09G173650
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glutathione transport system permease gsiD
Location	Cla97Chr09 : 10215870 .. 10216396 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGCATTTCCTCCTTCATTGAATTGCCTCTTCTCCGACCGCATCTGAAGCCAAATCGACGGCAACTGCAACAGAATTCACCACCGAAGAATCTCCATATGTTCCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCACTAAGAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCCGGCGACGTTTCGGTCCTCCTCCAGACAGGGTTTGCCAATTTTCTCCTCTGTTTAAATTCGAATCGATGCACAAAGTAGTCAGAAGAACCGATCTGAGATTAATCTCTTCAAATTTCTTTATTCTTTTTTCTTTCGGCAATTTGTGCAGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATTATGAAATCGTACCGATCTGATGAGAGCGATGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCGGGGCTTTAGCGGCAGAAGGAGATAA

mRNA sequence

ATGAATTGCATTTCCTCCTTCATTGAATTGCCTCTTCTCCGACCGCATCTGAAGCCAAATCGACGGCAACTGCAACAGAATTCACCACCGAAGAATCTCCATATGTTCCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCACTAAGAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCCGGCGACGTTTCGGTCCTCCTCCAGACAGGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATTATGAAATCGTACCGATCTGATGAGAGCGATGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCGGGGCTTTAGCGGCAGAAGGAGATAA

Coding sequence (CDS)

ATGAATTGCATTTCCTCCTTCATTGAATTGCCTCTTCTCCGACCGCATCTGAAGCCAAATCGACGGCAACTGCAACAGAATTCACCACCGAAGAATCTCCATATGTTCCGCCACATTTACATTTCTCCACAAACCTACCGATTCGATTCACTAAGAGCCAATGCAATTCTTCCAACCTCTTTAATTCTCGGAAACAGCACTATTCCTCCGGCGCAGTCCGGCGACGTTTCGGTCCTCCTCCAGACAGGCGGCGTGCTTCTGATTGCGTATTTGATAGCGAATTTCATTCTGCCGGAGTTTATTATGAAATCGTACCGATCTGATGAGAGCGATGGAAAAGCTGCGGTGGAAGATGAAGAATCAAGCGAAGGGAGGAAGAAGCGGGGCTTTAGCGGCAGAAGGAGATAA

Protein sequence

MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQTYRFDSLRANAILPTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEESSEGRKKRGFSGRRR

Homology

[Close]

BLAST of Cla97C09G173650 vs. NCBI nr
Match: XP_023525256.1 (uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.5 bits (423), Expect = 3.0e-38
Identity = 95/137 (69.34%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQTYRFDSLRANAILPTS 60
           MNCI+S IELP+LR HLKPNRRQ QQN+      M    YISPQ+ RF SL ANAI P S
Sbjct: 18  MNCITSAIELPILRSHLKPNRRQRQQNNSQSQPRM----YISPQSNRFASLTANAI-PNS 77

Query: 61  LILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEE 120
           L+L NSTIPP+QSGDVSVLLQT GVLLI Y IANFI+PEFIMKSY +DES+GKA +EDEE
Sbjct: 78  LVLANSTIPPSQSGDVSVLLQTSGVLLIVYFIANFIVPEFIMKSYSTDESEGKALMEDEE 137

Query: 121 --SSEGRKKRGFSGRRR 136
             +SE RKK+GF G +R
Sbjct: 138 KGASERRKKQGFGGNKR 149

[Close]

BLAST of Cla97C09G173650 vs. NCBI nr
Match: XP_022940449.1 (uncharacterized protein LOC111446047 [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 94/137 (68.61%), Postives = 108/137 (78.83%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQTYRFDSLRANAILPTS 60
           MNCI+S IELP+LR H KPNRRQ +QN    N      IYISPQ+ RF SL ANAI P S
Sbjct: 18  MNCITSAIELPVLRSHFKPNRRQRKQN----NSQSQPRIYISPQSNRFASLTANAI-PNS 77

Query: 61  LILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEE 120
           L+L NSTIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY +DES+GKA +ED+E
Sbjct: 78  LVLANSTIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMEDDE 137

Query: 121 --SSEGRKKRGFSGRRR 136
             +SE RKK+GF G +R
Sbjct: 138 KGASERRKKQGFGGNKR 149

[Close]

BLAST of Cla97C09G173650 vs. NCBI nr
Match: XP_022981640.1 (uncharacterized protein LOC111480699 [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 94/137 (68.61%), Postives = 107/137 (78.10%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQTYRFDSLRANAILPTS 60
           MNCI+S IELP+LR H KPNRRQ +QN    N      IYISPQ+ RF SL ANAI P S
Sbjct: 27  MNCITSAIELPVLRSHFKPNRRQRKQN----NSQSQPPIYISPQSNRFASLTANAI-PNS 86

Query: 61  LILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEE 120
           L+L N TIPP+QSGDVSVLLQT GVLLI YLIANFI+PEFIMKSY +DES+GKA +EDEE
Sbjct: 87  LVLAN-TIPPSQSGDVSVLLQTSGVLLIVYLIANFIVPEFIMKSYSTDESEGKALMEDEE 146

Query: 121 --SSEGRKKRGFSGRRR 136
             +SE RKK+GF G +R
Sbjct: 147 IGASERRKKQGFGGNKR 157

[Close]

BLAST of Cla97C09G173650 vs. NCBI nr
Match: KGN45072.1 (hypothetical protein Csa_7G420170 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 5.3e-27
Identity = 75/115 (65.22%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQ-TYRFDSLRANAILPT 60
           MN I S I+  LL     PN RQ     P  NLH+F  IY+ PQ T+RF S++ N+ILPT
Sbjct: 1   MNSIFSSIQFRLLP---SPNPRQ-----PQHNLHIFHQIYLPPQITHRFSSIKTNSILPT 60

Query: 61  SLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRS-DESDGK 114
           SLILGNSTIPP+QSGD+SVLL   GVLLIAYL+ANFI PEFIMKSYRS DE+DGK
Sbjct: 61  SLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGK 107

[Close]

BLAST of Cla97C09G173650 vs. NCBI nr
Match: XP_002529916.2 (uncharacterized protein LOC8266243 [Ricinus communis])

HSP 1 Score: 69.7 bits (169), Expect = 8.6e-09
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 27  NSPPKNLHMFRHIYISPQT-----YRFDSLRANAILPTSLILGNSTIPPAQSGDVSVLLQ 86
           +S PK   M +H +++P +      R  S+R NA+ P  LIL  ST  PAQ GD+SVLL 
Sbjct: 45  HSHPKQKLMKKHKWLNPCSLVKLDQRVLSVRTNAV-PNPLILAEST-SPAQGGDISVLLP 104

Query: 87  TGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEES 122
           TGG+LL  Y IANF++P FI KS+ SD+    +  E E S
Sbjct: 105 TGGLLLFVYGIANFVVPFFISKSFESDKETEDSGPEYEGS 142

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BLAST of Cla97C09G173650 vs. TrEMBL
Match: tr|A0A0A0K9M2|A0A0A0K9M2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.5e-27
Identity = 75/115 (65.22%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQ-TYRFDSLRANAILPT 60
           MN I S I+  LL     PN RQ     P  NLH+F  IY+ PQ T+RF S++ N+ILPT
Sbjct: 1   MNSIFSSIQFRLLP---SPNPRQ-----PQHNLHIFHQIYLPPQITHRFSSIKTNSILPT 60

Query: 61  SLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRS-DESDGK 114
           SLILGNSTIPP+QSGD+SVLL   GVLLIAYL+ANFI PEFIMKSYRS DE+DGK
Sbjct: 61  SLILGNSTIPPSQSGDISVLLPISGVLLIAYLLANFIFPEFIMKSYRSDDENDGK 107

[Close]

BLAST of Cla97C09G173650 vs. TrEMBL
Match: tr|B9SV97|B9SV97_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1303160 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 27  NSPPKNLHMFRHIYISPQT-----YRFDSLRANAILPTSLILGNSTIPPAQSGDVSVLLQ 86
           +S PK   M +H +++P +      R  S+R NA+ P  LIL  ST  PAQ GD+SVLL 
Sbjct: 15  HSHPKQKLMKKHKWLNPCSLVKLDQRVLSVRTNAV-PNPLILAEST-SPAQGGDISVLLP 74

Query: 87  TGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEES 122
           TGG+LL  Y IANF++P FI KS+ SD+    +  E E S
Sbjct: 75  TGGLLLFVYGIANFVVPFFISKSFESDKETEDSGPEYEGS 112

[Close]

BLAST of Cla97C09G173650 vs. TrEMBL
Match: tr|A0A1R3KBC6|A0A1R3KBC6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09684 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-07
Identity = 43/123 (34.96%), Postives = 67/123 (54.47%), Query Frame = 0


Query: 1   MNCISSFIELPLLRPHLKPNRRQLQQNSPPKNLHMFRHIYISPQTYRFDSLRANAILPTS 60
           ++C SSF+    L   LKP ++ + +          R +      +   SLR NAI   S
Sbjct: 4   LHCHSSFLP---LHSQLKPKQKLVAKQQLWLFCKAPRLVLQQQNVHSIVSLRTNAISHNS 63

Query: 61  LILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVEDEE 120
           L +G + IPP+QSGD++V LQT  +LL+ Y +ANF+ P FI K +  D+       ED++
Sbjct: 64  LFVG-ANIPPSQSGDITVFLQTSALLLVVYFLANFVAPYFISKYFGFDK-----VGEDQK 117

Query: 121 SSE 124
           ++E
Sbjct: 124 NNE 117

[Close]

BLAST of Cla97C09G173650 vs. TrEMBL
Match: tr|A0A067KSN4|A0A067KSN4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00909 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.9e-06
Identity = 39/91 (42.86%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 59  TSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAAVED 118
           T LIL   T P   +GD+SVLLQTGG+LL  Y IANF+ P FI KS   D+    +  ED
Sbjct: 52  TPLILVTDTFPANSNGDISVLLQTGGLLLFVYGIANFVFPAFISKSLEFDKETEDSVPED 111

Query: 119 E---------------ESSEGRKKRGFSGRR 135
           +               ++   RKKRGF G R
Sbjct: 112 DGYVDDGDADEKATMPKTKPLRKKRGFQGTR 142

[Close]

BLAST of Cla97C09G173650 vs. TrEMBL
Match: tr|A0A2P2LEU4|A0A2P2LEU4_RHIMU (Uncharacterized protein MANES_15G070100 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.5e-05
Identity = 27/68 (39.71%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 56  ILPTSLILGNSTIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSDESDGKAA 115
           ++ +S ILG ++    ++GD+SVLLQTGG+LL+ Y I NF++P FI K+ R ++++ +  
Sbjct: 53  VITSSFILGATS--AVKAGDISVLLQTGGLLLLMYGITNFVVPSFISKNLRPEKANMEPV 112

Query: 116 VEDEESSE 124
           +ED+   +
Sbjct: 113 IEDDSDDD 118

[Close]

BLAST of Cla97C09G173650 vs. TAIR10
Match: AT1G50732.1 (unknown protein.)

HSP 1 Score: 42.0 bits (97), Expect = 3.5e-04
Identity = 15/43 (34.88%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 66  STIPPAQSGDVSVLLQTGGVLLIAYLIANFILPEFIMKSYRSD 109
           S +PP++SGD++  L   G ++  YL+ NF++P  + KS + +
Sbjct: 67  SVLPPSESGDITTFLFVSGAMISMYLVTNFLVPSLLFKSLQGE 109

The following BLAST results are available for this feature:

BLAST of Cla97C09G173650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525256.1	3.0e-38	69.34	uncharacterized protein LOC111788910 [Cucurbita pepo subsp. pepo]	[more]
XP_022940449.1	2.0e-37	68.61	uncharacterized protein LOC111446047 [Cucurbita moschata]	[more]
XP_022981640.1	1.1e-35	68.61	uncharacterized protein LOC111480699 [Cucurbita maxima]	[more]
KGN45072.1	5.3e-27	65.22	hypothetical protein Csa_7G420170 [Cucumis sativus]	[more]
XP_002529916.2	8.6e-09	46.00	uncharacterized protein LOC8266243 [Ricinus communis]	[more]

BLAST of Cla97C09G173650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9M2\|A0A0A0K9M2_CUCSA	3.5e-27	65.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G420170 PE=4 SV=1	[more]
tr\|B9SV97\|B9SV97_RICCO	5.7e-09	46.00	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1303160 PE=4 SV=1	[more]
tr\|A0A1R3KBC6\|A0A1R3KBC6_9ROSI	3.1e-07	34.96	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_09684 PE=4 SV=1	[more]
tr\|A0A067KSN4\|A0A067KSN4_JATCU	5.9e-06	42.86	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_00909 PE=4 SV=1	[more]
tr\|A0A2P2LEU4\|A0A2P2LEU4_RHIMU	8.5e-05	39.71	Uncharacterized protein MANES_15G070100 OS=Rhizophora mucronata OX=61149 PE=4 SV...	[more]

BLAST of Cla97C09G173650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C09G173650 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G50732.1	3.5e-04	34.88	unknown protein.	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C09G173650.1	Cla97C09G173650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..135
None	No IPR available	PANTHER	PTHR37196	FAMILY NOT NAMED	coord: 19..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C09G173650	ClCG09G010910	Watermelon (Charleston Gray)	wcgwmbB035
Cla97C09G173650	CmaCh01G011220	Cucurbita maxima (Rimu)	cmawmbB515
Cla97C09G173650	CmoCh01G011730	Cucurbita moschata (Rifu)	cmowmbB499
Cla97C09G173650	Lsi02G018950	Bottle gourd (USVL1VR-Ls)	lsiwmbB212
Cla97C09G173650	Carg22367	Silver-seed gourd	carwmbB0923
Cla97C09G173650	Bhi09G001393	Wax gourd	wgowmbB608

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C09G173650	Silver-seed gourd	carwmbB0950
Cla97C09G173650	Cucumber (Gy14) v2	cgybwmbB534
Cla97C09G173650	Cucumber (Gy14) v1	cgywmbB142
Cla97C09G173650	Cucurbita maxima (Rimu)	cmawmbB050
Cla97C09G173650	Cucurbita moschata (Rifu)	cmowmbB037
Cla97C09G173650	Wild cucumber (PI 183967)	cpiwmbB588
Cla97C09G173650	Cucumber (Chinese Long) v3	cucwmbB585
Cla97C09G173650	Cucumber (Chinese Long) v2	cuwmbB562
Cla97C09G173650	Melon (DHL92) v3.6.1	medwmbB214
Cla97C09G173650	Melon (DHL92) v3.5.1	mewmbB228
Cla97C09G173650	Watermelon (97103) v1	wmwmbB041