Cla97C08G154270 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G154270
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Histone H3.3
Location	Cla97Chr08 : 22353517 .. 22354117 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATGGCTCGTACGAAGCAAACTGCTCGCAAATCTACCGGTGGAAAGGCTCCTAGAAAGCAGCTTGCCACTAAGGTAATCTTCAAGGAGAATTTTGAGCTACCTAGTCCTGAATTCCCATCCGTTTCCTGACCTAACATTGTAAACGTAACCAATATTTTGCTCAGGCTGCTCGTAAGTCGGCCCCCACAACTGGAGGTGTGAAGAAACCACACAGATACCGCCCAGGAACAGTCGCTCTTCGGTATGTAACCATATCTTATCATCACTCATGGGAACAGATTGATATGATTTCTTGTTTATATGAAATCTCATGCCGTACTGTATATGATGCAGAGAAATCCGCAAGTATCAGAAGAGTACCGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGTTTCCAGAGCCACGCTGTTTTGGCTTTGCAAGAGGCTGCTGAAGCTTACCTCGTTGGTCTGTTTGAAGATACGAATCTCTGCGCCATTCATGCTAAGCGTGTCACCATAATGCCGAAAGATATCCAACTTGCTAGAAGAATCCGCGGTGAAAGAGCTTAA

mRNA sequence

ATGCAGATGGCTCGTACGAAGCAAACTGCTCGCAAATCTACCGGTGGAAAGGCTCCTAGAAAGCAGCTTGCCACTAAGGCTGCTCGTAAGTCGGCCCCCACAACTGGAGGTGTGAAGAAACCACACAGATACCGCCCAGGAACAGTCGCTCTTCGAGAAATCCGCAAGTATCAGAAGAGTACCGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGTTTCCAGAGCCACGCTGTTTTGGCTTTGCAAGAGGCTGCTGAAGCTTACCTCGTTGGTCTGTTTGAAGATACGAATCTCTGCGCCATTCATGCTAAGCGTGTCACCATAATGCCGAAAGATATCCAACTTGCTAGAAGAATCCGCGGTGAAAGAGCTTAA

Coding sequence (CDS)

ATGCAGATGGCTCGTACGAAGCAAACTGCTCGCAAATCTACCGGTGGAAAGGCTCCTAGAAAGCAGCTTGCCACTAAGGCTGCTCGTAAGTCGGCCCCCACAACTGGAGGTGTGAAGAAACCACACAGATACCGCCCAGGAACAGTCGCTCTTCGAGAAATCCGCAAGTATCAGAAGAGTACCGAGCTTCTAATTCGCAAGCTCCCATTCCAGAGGCTTGTTCGTGAAATTGCACAGGATTTCAAGACAGATCTGCGTTTCCAGAGCCACGCTGTTTTGGCTTTGCAAGAGGCTGCTGAAGCTTACCTCGTTGGTCTGTTTGAAGATACGAATCTCTGCGCCATTCATGCTAAGCGTGTCACCATAATGCCGAAAGATATCCAACTTGCTAGAAGAATCCGCGGTGAAAGAGCTTAA

Protein sequence

MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Homology

[Close]

BLAST of Cla97C08G154270 vs. NCBI nr
Match: XP_022951614.1 (histone H3.3 isoform X2 [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 6.0e-66
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 121 TIMPKDIQLARRIRGERA 138

[Close]

BLAST of Cla97C08G154270 vs. NCBI nr
Match: XP_023002730.1 (histone H3.3 isoform X1 [Cucurbita maxima] >XP_023537221.1 histone H3.3 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 6.0e-66
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of Cla97C08G154270 vs. NCBI nr
Match: XP_021897581.1 (histone H3.3 isoform X1 [Carica papaya])

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   VQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of Cla97C08G154270 vs. NCBI nr
Match: XP_022997287.1 (histone H3.3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 258.1 bits (658), Expect = 1.7e-65
Identity = 137/138 (99.28%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           +QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 12  IQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 71

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 72  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 131

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 132 TIMPKDIQLARRIRGERA 149

[Close]

BLAST of Cla97C08G154270 vs. NCBI nr
Match: XP_007163668.1 (hypothetical protein PHAVU_001G253800g [Phaseolus vulgaris] >ESW35662.1 hypothetical protein PHAVU_001G253800g [Phaseolus vulgaris])

HSP 1 Score: 257.7 bits (657), Expect = 2.3e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 2   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 61
           QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 66  QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 125

Query: 62  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 121
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 126 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 185

Query: 122 IMPKDIQLARRIRGERA 139
           IMPKDIQLARRIRGERA
Sbjct: 186 IMPKDIQLARRIRGERA 202

[Close]

BLAST of Cla97C08G154270 vs. TrEMBL
Match: tr|A0A1Z5S992|A0A1Z5S992_SORBI (Uncharacterized protein (Fragment) OS=Sorghum bicolor OX=4558 GN=SORBI_3001G350501 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 2   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 61
           QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 124 QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 183

Query: 62  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 121
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 184 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 243

Query: 122 IMPKDIQLARRIRGERA 139
           IMPKDIQLARRIRGERA
Sbjct: 244 IMPKDIQLARRIRGERA 260

[Close]

BLAST of Cla97C08G154270 vs. TrEMBL
Match: tr|V7CZU0|V7CZU0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G253800g PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 2   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 61
           QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 66  QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 125

Query: 62  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 121
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 126 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 185

Query: 122 IMPKDIQLARRIRGERA 139
           IMPKDIQLARRIRGERA
Sbjct: 186 IMPKDIQLARRIRGERA 202

[Close]

BLAST of Cla97C08G154270 vs. TrEMBL
Match: tr|A0A2K3NFE2|A0A2K3NFE2_TRIPR (Histone H3 OS=Trifolium pratense OX=57577 GN=histone H3 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 3   LEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 62

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 63  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 122

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 123 TIMPKDIQLARRIRGERA 140

[Close]

BLAST of Cla97C08G154270 vs. TrEMBL
Match: tr|K7MPE3|K7MPE3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100783277 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 2   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 61
           +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 50  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 109

Query: 62  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 121
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 110 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 169

Query: 122 IMPKDIQLARRIRGERA 139
           IMPKDIQLARRIRGERA
Sbjct: 170 IMPKDIQLARRIRGERA 186

[Close]

BLAST of Cla97C08G154270 vs. TrEMBL
Match: tr|K3YVI8|K3YVI8_SETIT (Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101773505 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 2   QMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 61
           +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 88  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 147

Query: 62  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 121
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 148 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 207

Query: 122 IMPKDIQLARRIRGERA 139
           IMPKDIQLARRIRGERA
Sbjct: 208 IMPKDIQLARRIRGERA 224

[Close]

BLAST of Cla97C08G154270 vs. Swiss-Prot
Match: sp|P59169|H33_ARATH (Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. Swiss-Prot
Match: sp|Q6RUR1|H33_CAPAN (Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. Swiss-Prot
Match: sp|Q71V89|H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. Swiss-Prot
Match: sp|Q3C2E5|H33_LOLMU (Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. Swiss-Prot
Match: sp|P69245|H33_LOLTE (Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. TAIR10
Match: AT4G40030.2 (Histone superfamily protein)

HSP 1 Score: 256.5 bits (654), Expect = 9.2e-69
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0


Query: 1   MQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 60
           ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 27  IKMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 86

Query: 61  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 120
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 87  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 146

Query: 121 TIMPKDIQLARRIRGERA 139
           TIMPKDIQLARRIRGERA
Sbjct: 147 TIMPKDIQLARRIRGERA 164

[Close]

BLAST of Cla97C08G154270 vs. TAIR10
Match: AT4G40040.1 (Histone superfamily protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. TAIR10
Match: AT5G10980.1 (Histone superfamily protein)

HSP 1 Score: 256.1 bits (653), Expect = 1.2e-68
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. TAIR10
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 247.3 bits (630), Expect = 5.6e-66
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Cla97C08G154270 vs. TAIR10
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 247.3 bits (630), Expect = 5.6e-66
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 0


Query: 3   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 62
           MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 63  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 122
           LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 123 MPKDIQLARRIRGERA 139
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Cla97C08G154270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951614.1	6.0e-66	100.00	histone H3.3 isoform X2 [Cucurbita moschata]	[more]
XP_023002730.1	6.0e-66	100.00	histone H3.3 isoform X1 [Cucurbita maxima] >XP_023537221.1 histone H3.3 isoform ...	[more]
XP_021897581.1	1.7e-65	99.28	histone H3.3 isoform X1 [Carica papaya]	[more]
XP_022997287.1	1.7e-65	99.28	histone H3.3 isoform X1 [Cucurbita maxima]	[more]
XP_007163668.1	2.3e-65	100.00	hypothetical protein PHAVU_001G253800g [Phaseolus vulgaris] >ESW35662.1 hypothet...	[more]

BLAST of Cla97C08G154270 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1Z5S992\|A0A1Z5S992_SORBI	1.5e-65	100.00	Uncharacterized protein (Fragment) OS=Sorghum bicolor OX=4558 GN=SORBI_3001G3505...	[more]
tr\|V7CZU0\|V7CZU0_PHAVU	1.5e-65	100.00	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_001G253800g PE=3 ...	[more]
tr\|A0A2K3NFE2\|A0A2K3NFE2_TRIPR	2.0e-65	98.55	Histone H3 OS=Trifolium pratense OX=57577 GN=histone H3 PE=3 SV=1	[more]
tr\|K7MPE3\|K7MPE3_SOYBN	3.3e-65	99.27	Uncharacterized protein OS=Glycine max OX=3847 GN=100783277 PE=3 SV=1	[more]
tr\|K3YVI8\|K3YVI8_SETIT	3.3e-65	99.27	Uncharacterized protein OS=Setaria italica OX=4555 GN=LOC101773505 PE=3 SV=1	[more]

BLAST of Cla97C08G154270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P59169\|H33_ARATH	2.2e-67	100.00	Histone H3.3 OS=Arabidopsis thaliana OX=3702 GN=HTR4 PE=1 SV=2	[more]
sp\|Q6RUR1\|H33_CAPAN	2.2e-67	100.00	Histone H3.3 OS=Capsicum annuum OX=4072 PE=2 SV=3	[more]
sp\|Q71V89\|H33_GOSHI	2.2e-67	100.00	Histone H3.3 OS=Gossypium hirsutum OX=3635 GN=HIS3 PE=2 SV=3	[more]
sp\|Q3C2E5\|H33_LOLMU	2.2e-67	100.00	Histone H3.3 OS=Lolium multiflorum OX=4521 GN=RH3 PE=2 SV=3	[more]
sp\|P69245\|H33_LOLTE	2.2e-67	100.00	Histone H3.3 OS=Lolium temulentum OX=34176 PE=2 SV=2	[more]

BLAST of Cla97C08G154270 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G40030.2	9.2e-69	98.55	Histone superfamily protein	[more]
AT4G40040.1	1.2e-68	100.00	Histone superfamily protein	[more]
AT5G10980.1	1.2e-68	100.00	Histone superfamily protein	[more]
AT1G09200.1	5.6e-66	97.06	Histone superfamily protein	[more]
AT3G27360.1	5.6e-66	97.06	Histone superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **INTERPRO**
Term	Definition
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold
IPR000164	Histone_H3/CENP-A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006605	protein targeting
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005694	chromosome
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030875	rDNA protrusion
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G154270.1	Cla97C08G154270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 36..57 score: 91.8 coord: 100..116 score: 96.93 coord: 5..19 score: 97.1 coord: 116..137 score: 94.86 coord: 82..100 score: 82.38 coord: 19..33 score: 92.32 coord: 60..77 score: 97.46
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 36..138 e-value: 1.1E-74 score: 264.1
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 3..138
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 69..77
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 17..23
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 4..138 e-value: 1.5E-79 score: 266.5
IPR009072	Histone-fold	SUPERFAMILY	SSF47113	Histone-fold	coord: 4..135
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..134 e-value: 8.9E-54 score: 181.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	PANTHER	PTHR11426:SF163	SUBFAMILY NOT NAMED	coord: 3..138

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G154270	Cla022112	Watermelon (97103) v1	wmwmbB100
Cla97C08G154270	Csa2G369110	Cucumber (Chinese Long) v2	cuwmbB159
Cla97C08G154270	MELO3C011045	Melon (DHL92) v3.5.1	mewmbB306
Cla97C08G154270	CSPI02G21190	Wild cucumber (PI 183967)	cpiwmbB162
Cla97C08G154270	Cucsa.160200	Cucumber (Gy14) v1	cgywmbB282
Cla97C08G154270	CmoCh12G001310	Cucurbita moschata (Rifu)	cmowmbB179
Cla97C08G154270	CmoCh05G005370	Cucurbita moschata (Rifu)	cmowmbB800
Cla97C08G154270	CsGy2G020930	Cucumber (Gy14) v2	cgybwmbB153
Cla97C08G154270	MELO3C011045.2	Melon (DHL92) v3.6.1	medwmbB293
Cla97C08G154270	Carg08201	Silver-seed gourd	carwmbB0061
Cla97C08G154270	Carg20528	Silver-seed gourd	carwmbB0679
Cla97C08G154270	CsaV3_2G029860	Cucumber (Chinese Long) v3	cucwmbB160
Cla97C08G154270	Bhi04G000644	Wax gourd	wgowmbB315

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G154270	Watermelon (97103) v2	wmbwmbB041
Cla97C08G154270	Watermelon (97103) v2	wmbwmbB080
Cla97C08G154270	Silver-seed gourd	carwmbB0431
Cla97C08G154270	Silver-seed gourd	carwmbB0664
Cla97C08G154270	Cucumber (Gy14) v2	cgybwmbB236
Cla97C08G154270	Cucumber (Gy14) v2	cgybwmbB478
Cla97C08G154270	Cucumber (Gy14) v1	cgywmbB135
Cla97C08G154270	Cucumber (Gy14) v1	cgywmbB545
Cla97C08G154270	Cucurbita maxima (Rimu)	cmawmbB039
Cla97C08G154270	Cucurbita maxima (Rimu)	cmawmbB195
Cla97C08G154270	Cucurbita maxima (Rimu)	cmawmbB502
Cla97C08G154270	Cucurbita maxima (Rimu)	cmawmbB699
Cla97C08G154270	Cucurbita maxima (Rimu)	cmawmbB830
Cla97C08G154270	Cucurbita moschata (Rifu)	cmowmbB025
Cla97C08G154270	Cucurbita moschata (Rifu)	cmowmbB483
Cla97C08G154270	Cucurbita moschata (Rifu)	cmowmbB672
Cla97C08G154270	Wild cucumber (PI 183967)	cpiwmbB255
Cla97C08G154270	Wild cucumber (PI 183967)	cpiwmbB528
Cla97C08G154270	Cucumber (Chinese Long) v3	cucwmbB249
Cla97C08G154270	Cucumber (Chinese Long) v3	cucwmbB521
Cla97C08G154270	Cucumber (Chinese Long) v2	cuwmbB246
Cla97C08G154270	Cucumber (Chinese Long) v2	cuwmbB502
Cla97C08G154270	Bottle gourd (USVL1VR-Ls)	lsiwmbB148
Cla97C08G154270	Bottle gourd (USVL1VR-Ls)	lsiwmbB301
Cla97C08G154270	Bottle gourd (USVL1VR-Ls)	lsiwmbB444
Cla97C08G154270	Melon (DHL92) v3.6.1	medwmbB347
Cla97C08G154270	Melon (DHL92) v3.6.1	medwmbB550
Cla97C08G154270	Melon (DHL92) v3.5.1	mewmbB357
Cla97C08G154270	Melon (DHL92) v3.5.1	mewmbB556
Cla97C08G154270	Watermelon (Charleston Gray)	wcgwmbB084
Cla97C08G154270	Watermelon (Charleston Gray)	wcgwmbB124
Cla97C08G154270	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G154270	Watermelon (97103) v1	wmwmbB282
Cla97C08G154270	Watermelon (97103) v1	wmwmbB382
Cla97C08G154270	Wax gourd	wgowmbB446
Cla97C08G154270	Wax gourd	wgowmbB599