Cla97C08G149550 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G149550
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17932499 .. 17932840 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

mRNA sequence

ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

Coding sequence (CDS)

ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

Protein sequence

MAAAWAAYLVFTILVASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF

Homology

[Close]

BLAST of Cla97C08G149550 vs. NCBI nr
Match: KGN46157.1 (hypothetical protein Csa_6G058710 [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 3.9e-15
Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 6   AAYLVFTILVASXXXXXXXXXXXA-ANYAYRHSSPPLPPLHRQIIL-FSHDGSPPPWPPS 65
           AA+ VF ILV +           A   Y Y  SS PL PLH  IIL FSH  SP PW  S
Sbjct: 2   AAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSWS 61

Query: 66  NKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           N+S  K  R +N +RKY C KE EK+ K P  SQ+PWP CP+PA PPPPF
Sbjct: 62  NRSSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

[Close]

BLAST of Cla97C08G149550 vs. NCBI nr
Match: KGN46156.1 (hypothetical protein Csa_6G058700 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-07
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 7   AYLVFTILVASXXXXXXXXXXXAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKS 66
           AYL   IL+A            AA  A  +  P  PPL R ++  +   S PP P + + 
Sbjct: 6   AYLFLAILLA-VASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEY 65

Query: 67  PLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           P K  RR+N +RK KC +     +K  + +++PWP+CP+P SPPPPF
Sbjct: 66  PAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

[Close]

BLAST of Cla97C08G149550 vs. TrEMBL
Match: tr|A0A0A0KCN7|A0A0A0KCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.6e-15
Identity = 57/110 (51.82%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 6   AAYLVFTILVASXXXXXXXXXXXA-ANYAYRHSSPPLPPLHRQIIL-FSHDGSPPPWPPS 65
           AA+ VF ILV +           A   Y Y  SS PL PLH  IIL FSH  SP PW  S
Sbjct: 2   AAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSWS 61

Query: 66  NKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           N+S  K  R +N +RKY C KE EK+ K P  SQ+PWP CP+PA PPPPF
Sbjct: 62  NRSSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

[Close]

BLAST of Cla97C08G149550 vs. TrEMBL
Match: tr|A0A0A0KEF9|A0A0A0KEF9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-07
Identity = 40/107 (37.38%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 7   AYLVFTILVASXXXXXXXXXXXAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKS 66
           AYL   IL+A            AA  A  +  P  PPL R ++  +   S PP P + + 
Sbjct: 6   AYLFLAILLA-VASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEY 65

Query: 67  PLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           P K  RR+N +RK KC +     +K  + +++PWP+CP+P SPPPPF
Sbjct: 66  PAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of Cla97C08G149550 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46157.1	3.9e-15	51.82	hypothetical protein Csa_6G058710 [Cucumis sativus]	[more]
KGN46156.1	8.8e-07	37.38	hypothetical protein Csa_6G058700 [Cucumis sativus]	[more]

BLAST of Cla97C08G149550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCN7\|A0A0A0KCN7_CUCSA	2.6e-15	51.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058710 PE=4 SV=1	[more]
tr\|A0A0A0KEF9\|A0A0A0KEF9_CUCSA	5.8e-07	37.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1	[more]

BLAST of Cla97C08G149550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G149550 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G149550.1	Cla97C08G149550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..113

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G149550	Cla013832	Watermelon (97103) v1	wmwmbB100
Cla97C08G149550	ClCG08G006850	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G149550	CmaCh15G006070	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G149550	Lsi08G005420	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G149550	Bhi04G001383	Wax gourd	wgowmbB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G149550	Cucumber (Chinese Long) v2	cuwmbB500
Cla97C08G149550	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G149550	Melon (DHL92) v3.5.1	mewmbB308
Cla97C08G149550	Silver-seed gourd	carwmbB0063
Cla97C08G149550	Silver-seed gourd	carwmbB0862
Cla97C08G149550	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G149550	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G149550	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G149550	Wild cucumber (PI 183967)	cpiwmbB526