ClCG08G006850 (gene) Watermelon (Charleston Gray)

NameClCG08G006850
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 19221267 .. 19221608 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

mRNA sequence

ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

Coding sequence (CDS)

ATGGCGGCAGCTTGGGCGGCATACTTAGTGTTTACCATTTTGGTGGCTTCAATTTCTCCAAGCTCGCCGTCGAGAGCTTCAGCCGCCGCAAACTACGCCTACCGTCACTCTTCTCCTCCTCTGCCGCCGCTCCACCGTCAAATAATCCTCTTCAGTCACGACGGCTCTCCCCCACCGTGGCCGCCGTCGAACAAGTCTCCTCTGAAACCATTCCGCCGTCTAAATGCTCAGCGTAAATACAAGTGTCCCAAAGAATCTGAAAAACGAGATAAACATCCAGAGAGAAGTCAAGAACCTTGGCCAGAGTGCCCCATCCCAGCATCGCCGCCGCCTCCATTCTAG

Protein sequence

MAAAWAAYLVFTILVASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF
BLAST of ClCG08G006850 vs. TrEMBL
Match: A0A0A0KCN7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058710 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 66/110 (60.00%), Postives = 74/110 (67.27%), Query Frame = 1

Query: 6   AAYLVFTILV-ASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILF-SHDGSPPPWPPS 65
           AA+ VF ILV A ISP+SP RASA   Y Y  SS PL PLH  IILF SH  SP PW  S
Sbjct: 2   AAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSWS 61

Query: 66  NKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           N+S  K  R +N +RKY C KE EK+ K P  SQ+PWP CP+PA PPPPF
Sbjct: 62  NRSSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

BLAST of ClCG08G006850 vs. TrEMBL
Match: A0A0A0KEF9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.0e-15
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1

Query: 7   AYLVFTILVASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKS 66
           AYL   IL+A ++  SPS  S AA  A  +  P  PPL R ++  +   S PP P + + 
Sbjct: 6   AYLFLAILLA-VASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEY 65

Query: 67  PLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           P K  RR+N +RK KC +     +K  + +++PWP+CP+P SPPPPF
Sbjct: 66  PAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

BLAST of ClCG08G006850 vs. NCBI nr
Match: gi|700190953|gb|KGN46157.1| (hypothetical protein Csa_6G058710 [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 2.2e-25
Identity = 66/110 (60.00%), Postives = 74/110 (67.27%), Query Frame = 1

Query: 6   AAYLVFTILV-ASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILF-SHDGSPPPWPPS 65
           AA+ VF ILV A ISP+SP RASA   Y Y  SS PL PLH  IILF SH  SP PW  S
Sbjct: 2   AAHFVFAILVVAVISPTSPWRASADERYDYLLSSSPLLPLHHPIILFFSHHVSPSPWSWS 61

Query: 66  NKSPLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           N+S  K  R +N +RKY C KE EK+ K P  SQ+PWP CP+PA PPPPF
Sbjct: 62  NRSSRKLLRHINPERKYNCLKEPEKQFKDPVSSQKPWPRCPMPAFPPPPF 111

BLAST of ClCG08G006850 vs. NCBI nr
Match: gi|700190952|gb|KGN46156.1| (hypothetical protein Csa_6G058700 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.0e-14
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1

Query: 7   AYLVFTILVASISPSSPSRASAAANYAYRHSSPPLPPLHRQIILFSHDGSPPPWPPSNKS 66
           AYL   IL+A ++  SPS  S AA  A  +  P  PPL R ++  +   S PP P + + 
Sbjct: 6   AYLFLAILLA-VASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEY 65

Query: 67  PLKPFRRLNAQRKYKCPKESEKRDKHPERSQEPWPECPIPASPPPPF 114
           P K  RR+N +RK KC +     +K  + +++PWP+CP+P SPPPPF
Sbjct: 66  PAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KCN7_CUCSA1.5e-2560.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058710 PE=4 SV=1[more]
A0A0A0KEF9_CUCSA7.0e-1541.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700190953|gb|KGN46157.1|2.2e-2560.00hypothetical protein Csa_6G058710 [Cucumis sativus][more]
gi|700190952|gb|KGN46156.1|1.0e-1441.12hypothetical protein Csa_6G058700 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006850.1ClCG08G006850.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G006850Cla013832Watermelon (97103) v1wcgwmB400
ClCG08G006850Cla97C08G149550Watermelon (97103) v2wcgwmbB336
ClCG08G006850Bhi04G001383Wax gourdwcgwgoB624
ClCG08G006850Lsi08G005420Bottle gourd (USVL1VR-Ls)lsiwcgB439
The following gene(s) are paralogous to this gene:

None