Cla97C07G136920 (gene) Watermelon (97103) v2

NameCla97C07G136920
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionanaphase-promoting complex subunit 6
LocationCla97Chr07 : 24394638 .. 24395971 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTGTAAGCTTCTCCTAACTTCACTGTTTATGTGTGCTTTTGTGTTGAATGTAGACCTCGTATGTGTTTGGATTTGATTACTTGGGGATTATTCTTGTGGATTCTATTTATGTAGTTGTCTTCCTGTAGGTTTACCGAGAATCGGAAAACTTTTGAATTCCGGAAACATACTTTATTCAGAGATTAGAAACACAGACAACGAGAGAAATGAGCAAGCTGTGATGAATTTGGTTAAGAAACTGGGCTGCTGTGATGGTGTCCAGGTGACCAATTTTTGAATATTTCAAGTCTTCTCTTCTATATTCCTTTTCATGTTTTACTTGCCAACGAGATTTTTGAACATGTATAGTACTTCTTTTTTTCTAGTGTTATTTTAATGCTAATCAACATTTGATTTGCTCAAGTCCTGTGGGTTGGAAACACTCTCTATTATCCATAACTTAATTCGAAACTTATTGAAAATATGCAAAACTTGCGGTCGGATTGTTATCAAACACTCAGGAGTATTTGGTTTAAGCATTTCTCTATTTGTGTCTAAGCTTCTTAAAACAAAATTCCTTTTATTCTTGTGTAGGATTATTTTACTGCATCCATTACATATTACCACGTGCTTAGTTATTACTGACTTGGTTTTAGTTTCATGACTCTGTTATGCACTCTTACTCTACAAATTTGACGAATGGTATTTTCTGATTTGTGTTCCTTCTACTTAAGTGTTGCTGTTTTAGTTGTTCGGATGGAAAGAAATTTTGACAATCATGTGATTCATAGGAAAGCATTGATATTATCCTTTTTGGAACATTACATTATCTTATCTTACAATTTCTTGTGGGAGGTACGTTAGTGCATATAAAGTTGATTGAACAGTGTCCAGCTTATTTTTGTAGTCTTATGGTAGTGGGCATTATCTCGCAATGAAAGGACGTTAATAGTGAGAATTTTGGCGTTATATTTTATTTCAGGCTTCATCAAGTTGATTTACCCTATCGTTCTTGTTTGTGAATCAGACTTTGTGGCTGCAATCAGACGGTCAGTTTTGCACTGAAATGTCAAGTTTAGCTCTTATGGACGAATGCCAAAATGGGATGGATCCAAAGGAAGACCGTTTGGCAAGGTGA

mRNA sequence

ATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTACTTTGTGGCTGCAATCAGACGGTCAGTTTTGCACTGAAATGTCAAGTTTAGCTCTTATGGACGAATGCCAAAATGGGATGGATCCAAAGGAAGACCGTTTGGCAAGGTGA

Coding sequence (CDS)

ATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTACTTTGTGGCTGCAATCAGACGGTCAGTTTTGCACTGAAATGTCAAGTTTAGCTCTTATGGACGAATGCCAAAATGGGATGGATCCAAAGGAAGACCGTTTGGCAAGGTGA

Protein sequence

MKFHENEGGRNRNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWTQFYLLNASNIVLPDPPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKEDRLAR
BLAST of Cla97C07G136920 vs. NCBI nr
Match: XP_022142889.1 (anaphase-promoting complex subunit 6 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 3.1e-09
Identity = 53/117 (45.30%), Postives = 60/117 (51.28%), Query Frame = 0

Query: 1   MKFHENE----GGRNRNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT-------- 60
           MK  E E     G  R+CV K LYSS I  FFAD VAAFTEDPAD    +          
Sbjct: 1   MKMREEEIEKLRGVVRDCVSKHLYSSAI--FFADKVAAFTEDPADIYMQAQALFLGRHFR 60

Query: 61  -QFYLLNASNIVLPDPPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
             F+LLNAS IVL DP F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 61  RAFHLLNASKIVLRDPRFRYLAAKC--LEELKEWDQCLAMLGDAKVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. NCBI nr
Match: XP_022931441.1 (anaphase-promoting complex subunit 6-like [Cucurbita moschata])

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09
Identity = 48/102 (47.06%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+CV K LYSS I  FFAD VAAFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16  RDCVSKHLYSSAI--FFADKVAAFTEDPADVYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 76  PRFRYLAAKC--LEELKEWDQCLMMLGDAKVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. NCBI nr
Match: XP_023551896.1 (anaphase-promoting complex subunit 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 6.9e-09
Identity = 48/102 (47.06%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+CV K LYSS I  FFAD VAAFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16  RDCVSKHLYSSAI--FFADKVAAFTEDPADVYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 76  PRFRYLAAKC--LEELKEWDQCLMMLGDAKVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. NCBI nr
Match: XP_022984323.1 (anaphase-promoting complex subunit 6-like [Cucurbita maxima])

HSP 1 Score: 69.3 bits (168), Expect = 9.0e-09
Identity = 48/102 (47.06%), Postives = 55/102 (53.92%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+CV K LYSS I  FFAD VAAFTEDPAD    +            F+LLNAS IVL D
Sbjct: 68  RDCVSKHLYSSAI--FFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 127

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 128 PRFRYLAAKC--LEELKEWDQCLMMLGDAKVDEHGNVLDNKD 165

BLAST of Cla97C07G136920 vs. NCBI nr
Match: XP_004146390.1 (PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 5.9e-08
Identity = 46/102 (45.10%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+C+ K LYSS I  FFAD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16  RDCLSKHLYSSAI--FFADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 76  PRFRYLAAKC--LEELKEWDQCLAMLGDANVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. TrEMBL
Match: tr|A0A1S3B4Z0|A0A1S3B4Z0_CUCME (anaphase-promoting complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103486072 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-08
Identity = 46/102 (45.10%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+C+ K LYSS I  FFAD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16  RDCLSKHLYSSAI--FFADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 76  PRFRYLAAKC--LEELKEWDQCLAMLGDANVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. TrEMBL
Match: tr|A0A0A0L2G5|A0A0A0L2G5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G506830 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.9e-08
Identity = 46/102 (45.10%), Postives = 54/102 (52.94%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+C+ K LYSS I  FFAD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16  RDCLSKHLYSSAI--FFADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
           P F Y AA C  L    +   C  M   A +DE  N +D K+
Sbjct: 76  PRFRYLAAKC--LEELKEWDQCLAMLGDANVDEHGNVLDNKD 113

BLAST of Cla97C07G136920 vs. TrEMBL
Match: tr|F6H2M3|F6H2M3_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g01170 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-07
Identity = 51/117 (43.59%), Postives = 58/117 (49.57%), Query Frame = 0

Query: 1   MKFHENE----GGRNRNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT-------- 60
           MK  E E     G  R+C+ K LYSS I  FFAD VAAFT DPAD    +          
Sbjct: 1   MKMREEEIEKLRGVVRDCLSKHLYSSAI--FFADKVAAFTSDPADIYMQAQALFLGRHYR 60

Query: 61  -QFYLLNASNIVLPDPPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
             F+LLNAS IVL D  F Y AA C  L  Q +   C  M   A +DE  N  D K+
Sbjct: 61  RAFHLLNASQIVLRDLRFRYLAAKC--LEEQKEWDQCLLMLGDAKVDEHGNVNDTKD 113

BLAST of Cla97C07G136920 vs. TrEMBL
Match: tr|A0A059BNT2|A0A059BNT2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01248 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 47/102 (46.08%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+CV K LYSS I  FFAD VAAFT DPAD    +            F+LLNAS IVL D
Sbjct: 14  RDCVTKHLYSSAI--FFADKVAAFTRDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
             F Y AA C  L   ++   C  M   A +DE  N  D KE
Sbjct: 74  LRFRYLAAKC--LEELNEWDQCLLMLGDAKVDEHGNVYDTKE 111

BLAST of Cla97C07G136920 vs. TrEMBL
Match: tr|A0A059BMS7|A0A059BMS7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01248 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.9e-07
Identity = 47/102 (46.08%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 12  RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
           R+CV K LYSS I  FFAD VAAFT DPAD    +            F+LLNAS IVL D
Sbjct: 14  RDCVTKHLYSSAI--FFADKVAAFTRDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 72  PPFCYPAANCPTLWLQSDGQFCTEMSSLALMDECQNGMDPKE 105
             F Y AA C  L   ++   C  M   A +DE  N  D KE
Sbjct: 74  LRFRYLAAKC--LEELNEWDQCLLMLGDAKVDEHGNVYDTKE 111

BLAST of Cla97C07G136920 vs. Swiss-Prot
Match: sp|B3DNN5|CDC16_ARATH (Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=APC6 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-07
Identity = 35/70 (50.00%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 12 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
          R+CV K LYSS I  FFAD VAA T DP+D    +            F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 72 PPFCYPAANC 73
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81


HSP 2 Score: 45.1 bits (105), Expect = 6.0e-04
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 77  LQSDGQFCTEMSSLALMDECQNGMDPK 104
           L+ D QFCTEM ++ALMDECQNG+D K
Sbjct: 513 LKPDDQFCTEMLNVALMDECQNGVDSK 539

BLAST of Cla97C07G136920 vs. TAIR10
Match: AT1G78770.1 (anaphase promoting complex 6)

HSP 1 Score: 55.8 bits (133), Expect = 1.9e-08
Identity = 35/70 (50.00%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 12 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 71
          R+CV K LYSS I  FFAD VAA T DP+D    +            F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAALTNDPSDIYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 72 PPFCYPAANC 73
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81


HSP 2 Score: 45.1 bits (105), Expect = 3.3e-05
Identity = 19/27 (70.37%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 77  LQSDGQFCTEMSSLALMDECQNGMDPK 104
           L+ D QFCTEM ++ALMDECQNG+D K
Sbjct: 513 LKPDDQFCTEMLNVALMDECQNGVDSK 539

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142889.13.1e-0945.30anaphase-promoting complex subunit 6 [Momordica charantia][more]
XP_022931441.16.9e-0947.06anaphase-promoting complex subunit 6-like [Cucurbita moschata][more]
XP_023551896.16.9e-0947.06anaphase-promoting complex subunit 6-like [Cucurbita pepo subsp. pepo][more]
XP_022984323.19.0e-0947.06anaphase-promoting complex subunit 6-like [Cucurbita maxima][more]
XP_004146390.15.9e-0845.10PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
tr|A0A1S3B4Z0|A0A1S3B4Z0_CUCME3.9e-0845.10anaphase-promoting complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103486072 PE=... [more]
tr|A0A0A0L2G5|A0A0A0L2G5_CUCSA3.9e-0845.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G506830 PE=4 SV=1[more]
tr|F6H2M3|F6H2M3_VITVI1.5e-0743.59Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0014g01170 PE=4 SV=... [more]
tr|A0A059BNT2|A0A059BNT2_EUCGR1.9e-0746.08Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01248 PE=4 SV... [more]
tr|A0A059BMS7|A0A059BMS7_EUCGR1.9e-0746.08Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F01248 PE=4 SV... [more]
Match NameE-valueIdentityDescription
sp|B3DNN5|CDC16_ARATH3.4e-0750.00Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana OX=3702 GN=APC6 PE=... [more]
Match NameE-valueIdentityDescription
AT1G78770.11.9e-0850.00anaphase promoting complex 6[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010087 phloem or xylem histogenesis
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0007129 synapsis
biological_process GO:0051225 spindle assembly
biological_process GO:0016444 somatic cell DNA recombination
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0009909 regulation of flower development
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0051302 regulation of cell division
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009555 pollen development
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0007276 gamete generation
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0006270 DNA replication initiation
biological_process GO:0006306 DNA methylation
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0071555 cell wall organization
biological_process GO:0008283 cell proliferation
biological_process GO:0007155 cell adhesion
biological_process GO:0045010 actin nucleation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C07G136920.1Cla97C07G136920.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C07G136920Cla005376Watermelon (97103) v1wmwmbB168
Cla97C07G136920ClCG07G010240Watermelon (Charleston Gray)wcgwmbB307
Cla97C07G136920CmoCh16G004700Cucurbita moschata (Rifu)cmowmbB335
Cla97C07G136920Carg11367Silver-seed gourdcarwmbB0682
The following gene(s) are paralogous to this gene:

None