ClCG07G010240 (gene) Watermelon (Charleston Gray)

NameClCG07G010240
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionCell division cycle, putative
LocationCG_Chr07 : 25956166 .. 25956665 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCTCAATTCCTTTTGCGCCATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTGTAAGCTTCTCCTAACTTCACTGTTTATGTGTGCTTTTGTGTTGAATGTAGACCTCGTATGTGTTTGGATTTGATTACTTGGGGATTATTCTTGTGGATTCTATTTATGTAGTTGTCTTCCTGTAGGTTTACCGAGAATCGGAAAACTTTTGAATTCCGGAAACATACTTTATTCAGAGATTAGAAACACAGACAACGAGAGAAATGAGCAAGCTGTGATGAATTTGGTTAAGAAACTGGGCTGCTGTGATGGTGTCCAG

mRNA sequence

AATCTCAATTCCTTTTGCGCCATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTATTAGAAACACAGACAACGAGAGAAATGAGCAAGCTGTGATGAATTTGGTTAAGAAACTGGGCTGCTGTGATGGTGTCCAG

Coding sequence (CDS)

AATCTCAATTCCTTTTGCGCCATGAAATTCCATGAGAATGAGGGAGGAAGAAATCGAAACTGTGTGAGGAAGCGTCTCTACTCCTCCCCCATCTTCTTCTTCTTCGCCGACAATGTCGCCGCTTTCACTGAGGATCCTGCCGACACTTTACATCTTTCTTGGACCCAATTTTACCTCCTCAATGCCTCCAACATCGTCCTTCCTGATCCTCCGTTTTGCTACCCTGCTGCTAATTGCCCTATTAGAAACACAGACAACGAGAGAAATGAGCAAGCTGTGATGAATTTGGTTAAGAAACTGGGCTGCTGTGATGGTGTCCAG

Protein sequence

NLNSFCAMKFHENEGGRNRNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWTQFYLLNASNIVLPDPPFCYPAANCPIRNTDNERNEQAVMNLVKKLGCCDGVQ
BLAST of ClCG07G010240 vs. Swiss-Prot
Match: CDC16_ARATH (Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-06
Identity = 35/70 (50.00%), Postives = 37/70 (52.86%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+CV K LYSS IFF  AD VAA T DP+D    +            F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAIFF--ADKVAALTNDPSDIYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. TrEMBL
Match: A0A0A0L2G5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506830 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+C+ K LYSS IFF  AD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16 RDCLSKHLYSSAIFF--ADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 79 PPFCYPAANC 80
          P F Y AA C
Sbjct: 76 PRFRYLAAKC 83

BLAST of ClCG07G010240 vs. TrEMBL
Match: A0A067K367_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16222 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+CV K LYSS I  FFAD VAAFT+DPAD    +            F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAAFTKDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. TrEMBL
Match: B9I0J1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11010g PE=4 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWTQF---------YLLNASNIVLPD 78
          R+CV K LYSS I  FFAD VAAFT+DPAD    +   F         +LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAAFTDDPADIYMQAQALFLGRHYRRAYHLLNASKIVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. TrEMBL
Match: A0A068UBT3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021371001 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 39/70 (55.71%), Postives = 42/70 (60.00%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPAD------TLHLS---WTQFYLLNASNIVLPD 78
          R+CV K LYSS I  FFAD VAAFT DPAD       L+L       F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAAFTADPADIYMQAQALYLGRHYRRAFHLLNASQIVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. TrEMBL
Match: A0A0J8CMN5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085610 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 9.6e-06
Identity = 36/70 (51.43%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+CV K LYSS I  FFAD VAAFT DPAD    +            F+LLNAS++VL D
Sbjct: 14 RDCVSKHLYSSAI--FFADKVAAFTSDPADIYMQAQALFLGRHFRRSFHLLNASHVVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. TAIR10
Match: AT1G78770.1 (AT1G78770.1 anaphase promoting complex 6)

HSP 1 Score: 53.9 bits (128), Expect = 7.0e-08
Identity = 35/70 (50.00%), Postives = 37/70 (52.86%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+CV K LYSS IFF  AD VAA T DP+D    +            F+LLNAS IVL D
Sbjct: 14 RDCVSKHLYSSAIFF--ADKVAALTNDPSDIYMQAQALFLGRHYRRAFHLLNASKIVLRD 73

Query: 79 PPFCYPAANC 80
            F Y AA C
Sbjct: 74 LRFRYLAAKC 81

BLAST of ClCG07G010240 vs. NCBI nr
Match: gi|700199644|gb|KGN54802.1| (hypothetical protein Csa_4G506830 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+C+ K LYSS IFF  AD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16 RDCLSKHLYSSAIFF--ADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 79 PPFCYPAANC 80
          P F Y AA C
Sbjct: 76 PRFRYLAAKC 83

BLAST of ClCG07G010240 vs. NCBI nr
Match: gi|659082954|ref|XP_008442113.1| (PREDICTED: anaphase-promoting complex subunit 6 isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+C+ K LYSS IFF  AD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16 RDCLSKHLYSSAIFF--ADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 79 PPFCYPAANC 80
          P F Y AA C
Sbjct: 76 PRFRYLAAKC 83

BLAST of ClCG07G010240 vs. NCBI nr
Match: gi|449457307|ref|XP_004146390.1| (PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+C+ K LYSS IFF  AD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16 RDCLSKHLYSSAIFF--ADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 79 PPFCYPAANC 80
          P F Y AA C
Sbjct: 76 PRFRYLAAKC 83

BLAST of ClCG07G010240 vs. NCBI nr
Match: gi|659082958|ref|XP_008442116.1| (PREDICTED: anaphase-promoting complex subunit 6 isoform X2 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-06
Identity = 37/70 (52.86%), Postives = 41/70 (58.57%), Query Frame = 1

Query: 19 RNCVRKRLYSSPIFFFFADNVAAFTEDPADTLHLSWT---------QFYLLNASNIVLPD 78
          R+C+ K LYSS IFF  AD V AFTEDPAD    +            F+LLNAS IVL D
Sbjct: 16 RDCLSKHLYSSAIFF--ADKVTAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRD 75

Query: 79 PPFCYPAANC 80
          P F Y AA C
Sbjct: 76 PRFRYLAAKC 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CDC16_ARATH1.2e-0650.00Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L2G5_CUCSA1.5e-0652.86Uncharacterized protein OS=Cucumis sativus GN=Csa_4G506830 PE=4 SV=1[more]
A0A067K367_JATCU9.6e-0652.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16222 PE=4 SV=1[more]
B9I0J1_POPTR9.6e-0652.86Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11010g PE=4 SV=2[more]
A0A068UBT3_COFCA9.6e-0655.71Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021371001 PE=4 SV=1[more]
A0A0J8CMN5_BETVU9.6e-0651.43Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085610 PE=4 S... [more]
Match NameE-valueIdentityDescription
AT1G78770.17.0e-0850.00 anaphase promoting complex 6[more]
Match NameE-valueIdentityDescription
gi|700199644|gb|KGN54802.1|2.1e-0652.86hypothetical protein Csa_4G506830 [Cucumis sativus][more]
gi|659082954|ref|XP_008442113.1|2.1e-0652.86PREDICTED: anaphase-promoting complex subunit 6 isoform X1 [Cucumis melo][more]
gi|449457307|ref|XP_004146390.1|2.1e-0652.86PREDICTED: anaphase-promoting complex subunit 6 [Cucumis sativus][more]
gi|659082958|ref|XP_008442116.1|2.1e-0652.86PREDICTED: anaphase-promoting complex subunit 6 isoform X2 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009555 pollen development
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0007129 synapsis
biological_process GO:0051225 spindle assembly
biological_process GO:0016444 somatic cell DNA recombination
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0009909 regulation of flower development
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0051302 regulation of cell division
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010087 phloem or xylem histogenesis
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006306 DNA methylation
biological_process GO:0045010 actin nucleation
biological_process GO:0007155 cell adhesion
biological_process GO:0008283 cell proliferation
biological_process GO:0071555 cell wall organization
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0006270 DNA replication initiation
biological_process GO:0000724 double-strand break repair via homologous recombination
biological_process GO:0007276 gamete generation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0051301 cell division
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G010240.1ClCG07G010240.1mRNA


The following gene(s) are paralogous to this gene:

None