Cla97C06G119410 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G119410
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr06 : 19095574 .. 19096017 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTTGGATTTCAAGAAGCCGAGAAGAGGGGAGTTCCGAATCGCGACGATTTCCTCAATTTGCAGCAACGGACTCAACACCATTGTTATTTCATGGATGGAACAACCTCTAATAATTCCAATTACAGTTCCGATTCCACCAATAGGATTTCCTATTACGCCGCCGCCGCCGCACAACATCGCCGGAAGATCGAGTACACGCGGTCTCTATCGCAGGGGTCACCGCGACGGTTGGTGCCGGCGGCGAGTTATTTAGGGGTGCTGCTGTGCTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTTCCGCCTCTGCCGCCGCCGCCGTTGATGCTGTTGCTGCTTCTGCCGATTGGGATTTTGGGAATGCTTATGGTGTTAGCGTTTATGCCTTCTAATGATACCAAGGAAATCACTTCCTCTTCTCATACATATATGTAA

mRNA sequence

ATGACTCTTGGATTTCAAGAAGCCGAGAAGAGGGGAGTTCCGAATCGCGACGATTTCCTCAATTTGCAGCAACGGACTCAACACCATTGTTATTTCATGGATGGAACAACCTCTAATAATTCCAATTACAGTTCCGATTCCACCAATAGGATTTCCTATTACGCCGCCGCCGCCGCACAACATCGCCGGAAGATCGAGTACACGCGGTCTCTATCGCAGGGGTCACCGCGACGGTTGGTGCCGGCGGCGAGTTATTTAGGGGTGCTGCTGTGCTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTTCCGCCTCTGCCGCCGCCGCCGTTGATGCTGTTGCTGCTTCTGCCGATTGGGATTTTGGGAATGCTTATGGTGTTAGCGTTTATGCCTTCTAATGATACCAAGGAAATCACTTCCTCTTCTCATACATATATGTAA

Coding sequence (CDS)

ATGACTCTTGGATTTCAAGAAGCCGAGAAGAGGGGAGTTCCGAATCGCGACGATTTCCTCAATTTGCAGCAACGGACTCAACACCATTGTTATTTCATGGATGGAACAACCTCTAATAATTCCAATTACAGTTCCGATTCCACCAATAGGATTTCCTATTACGCCGCCGCCGCCGCACAACATCGCCGGAAGATCGAGTACACGCGGTCTCTATCGCAGGGGTCACCGCGACGGTTGGTGCCGGCGGCGAGTTATTTAGGGGTGCTGCTGTGCTTGGCGGCGTCGTTGTTGATTCTTCCGTTGGTTCTTCCGCCTCTGCCGCCGCCGCCGTTGATGCTGTTGCTGCTTCTGCCGATTGGGATTTTGGGAATGCTTATGGTGTTAGCGTTTATGCCTTCTAATGATACCAAGGAAATCACTTCCTCTTCTCATACATATATGTAA

Protein sequence

MTLGFQEAEKRGVPNRDDFLNLQQRTQHHCYFMDGTTSNNSNYSSDSTNRISYYAAAAAQHRRKIEYTRSLSQGSPRRLVPAASYLGVLLCLAASLLILPLVLPPLPPPPLMLLLLLPIGILGMLMVLAFMPSNDTKEITSSSHTYM

Homology

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BLAST of Cla97C06G119410 vs. NCBI nr
Match: KGN61450.1 (hypothetical protein Csa_2G123610 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 117/147 (79.59%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNRDDFLNLQQRTQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTLGFQEAEKRGVPN + FL+L Q     XXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQ--XXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQ 60

Query: 61  XXXXIEYTRSLSQGSPRRLVPAASYLGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPIG 120
               +EY RSLSQG+PRRLVPAASYLGVLL   XXXXXXXXXXXXXXXXXXXXXXXXPIG
Sbjct: 61  DRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIG 120

Query: 121 ILGMLMVLAFMPSNDTKEITSSSHTYM 148
           ILGMLMVLAFMPSNDTK+ITSSSHTYM
Sbjct: 121 ILGMLMVLAFMPSNDTKDITSSSHTYM 145

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BLAST of Cla97C06G119410 vs. NCBI nr
Match: XP_022974015.1 (ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurbita maxima])

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 92/147 (62.59%), Postives = 103/147 (70.07%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNRDDFLNLQQRTQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+LG  +A+  GVPN DDF ++       XXXXXXXXXX                     
Sbjct: 1   MSLGLPDADTPGVPNPDDFRSM--HXXXXXXXXXXXXXXAADSKPAFPSSNTTPYDAAPQ 60

Query: 61  XXXXIEYTRSLSQGSPRRLVPAASYLGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPIG 120
               +EYTRSLSQG+ RRLVPAA+YL VL+XXXXXXXXXXXXXXXXXXXXXXXXXXXPIG
Sbjct: 61  EQRMLEYTRSLSQGTARRLVPAATYLAVLVXXXXXXXXXXXXXXXXXXXXXXXXXXXPIG 120

Query: 121 ILGMLMVLAFMPSNDTKEITSSSHTYM 148
           I+GMLMVLAFMPSN  K+ITSS  TYM
Sbjct: 121 IMGMLMVLAFMPSNHAKDITSSHTTYM 145

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BLAST of Cla97C06G119410 vs. NCBI nr
Match: XP_023514167.1 (ARGOS-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.0 bits (193), Expect = 1.5e-11
Identity = 63/83 (75.90%), Postives = 68/83 (81.93%), Query Frame = 0


Query: 65  IEYTRSLSQGSPRRLVPAASYLGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPIGILGM 124
           +EYTRSLSQG+ RRLVPAA+YL VL+          XXXXXXXXXXXXXXXXX IGILGM
Sbjct: 73  LEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXXXXXXXXIGILGM 132

Query: 125 LMVLAFMPSNDTKEITSSSHTYM 148
           LMVLAFMPSND K+I SSSHTYM
Sbjct: 133 LMVLAFMPSNDAKDI-SSSHTYM 154

[Close]

BLAST of Cla97C06G119410 vs. NCBI nr
Match: XP_022930113.1 (ARGOS-like protein [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 90/147 (61.22%), Postives = 100/147 (68.03%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNRDDFLNLQQRTQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M+LG  + +  GVPN DDF++               XXXXXXXXXXXXXXXXXX      
Sbjct: 1   MSLGLPDTDTPGVPNPDDFIS---------------XXXXXXXXXXXXXXXXXXHDAAPQ 60

Query: 61  XXXXIEYTRSLSQGSPRRLVPAASYLGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPIG 120
               +EYTRSLSQG+ RRLVPAA+YL VL+          XXXXXXXXXXXXXXXXX IG
Sbjct: 61  EQRMLEYTRSLSQGTARRLVPAATYLAVLVCLAASLLILPXXXXXXXXXXXXXXXXXXIG 120

Query: 121 ILGMLMVLAFMPSNDTKEITSSSHTYM 148
           ILGMLMVLAFMPSND K+I SSSHT M
Sbjct: 121 ILGMLMVLAFMPSNDAKDI-SSSHTSM 131

[Close]

BLAST of Cla97C06G119410 vs. TrEMBL
Match: tr|A0A0A0LHQ4|A0A0A0LHQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.7e-22
Identity = 117/147 (79.59%), Postives = 122/147 (82.99%), Query Frame = 0


Query: 1   MTLGFQEAEKRGVPNRDDFLNLQQRTQHHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MTLGFQEAEKRGVPN + FL+L Q     XXXXXXXXXXXXXXXXXXXXXX         
Sbjct: 1   MTLGFQEAEKRGVPNPNHFLHLHQ--XXXXXXXXXXXXXXXXXXXXXXXXXITYYAAAAQ 60

Query: 61  XXXXIEYTRSLSQGSPRRLVPAASYLGVLLXXXXXXXXXXXXXXXXXXXXXXXXXXXPIG 120
               +EY RSLSQG+PRRLVPAASYLGVLL   XXXXXXXXXXXXXXXXXXXXXXXXPIG
Sbjct: 61  DRRKVEYLRSLSQGTPRRLVPAASYLGVLLCLAXXXXXXXXXXXXXXXXXXXXXXXXPIG 120

Query: 121 ILGMLMVLAFMPSNDTKEITSSSHTYM 148
           ILGMLMVLAFMPSNDTK+ITSSSHTYM
Sbjct: 121 ILGMLMVLAFMPSNDTKDITSSSHTYM 145

The following BLAST results are available for this feature:

BLAST of Cla97C06G119410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61450.1	5.6e-22	79.59	hypothetical protein Csa_2G123610 [Cucumis sativus]	[more]
XP_022974015.1	1.1e-12	62.59	ARGOS-like protein [Cucurbita maxima] >XP_022974016.1 ARGOS-like protein [Cucurb...	[more]
XP_023514167.1	1.5e-11	75.90	ARGOS-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022930113.1	3.4e-11	61.22	ARGOS-like protein [Cucurbita moschata]	[more]

BLAST of Cla97C06G119410 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LHQ4\|A0A0A0LHQ4_CUCSA	3.7e-22	79.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G123610 PE=4 SV=1	[more]

BLAST of Cla97C06G119410 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G119410 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0046622	positive regulation of organ growth

Vocabulary: **INTERPRO**
Term	Definition
IPR037468	ARGOS/ARL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0046622	positive regulation of organ growth
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G119410.1	Cla97C06G119410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36023:SF3	ARGOS-LIKE PROTEIN-RELATED	coord: 17..141
IPR037468	ARGOS/ARL	PANTHER	PTHR36023	FAMILY NOT NAMED	coord: 17..141

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G119410	ClCG06G009960	Watermelon (Charleston Gray)	wcgwmbB273

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G119410	Silver-seed gourd	carwmbB0775
Cla97C06G119410	Cucumber (Gy14) v2	cgybwmbB139
Cla97C06G119410	Cucumber (Gy14) v1	cgywmbB465
Cla97C06G119410	Cucurbita maxima (Rimu)	cmawmbB312
Cla97C06G119410	Cucurbita moschata (Rifu)	cmowmbB294
Cla97C06G119410	Wild cucumber (PI 183967)	cpiwmbB148
Cla97C06G119410	Cucumber (Chinese Long) v3	cucwmbB146
Cla97C06G119410	Cucumber (Chinese Long) v2	cuwmbB145
Cla97C06G119410	Melon (DHL92) v3.6.1	medwmbB382
Cla97C06G119410	Melon (DHL92) v3.5.1	mewmbB392
Cla97C06G119410	Watermelon (97103) v1	wmwmbB406
Cla97C06G119410	Watermelon (97103) v1	wmwmbB410
Cla97C06G119410	Wax gourd	wgowmbB091