Cla97C06G119170 (gene) Watermelon (97103) v2

Overview
NameCla97C06G119170
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionRNA-binding protein 42
LocationCla97Chr06 : 15633208 .. 15636088 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGTTTCTAATCCATCTATTTGGAATTTCACTTATTTGCTTCACTTTATATATATATTTGATCTCTCAAGTTGAAGAAGATTGTGCATATTTATTTCCGATATTTTGAATTGTTTCTAATGCTTTTCTTCTTTAGTTACTGTGCCGCAAAATAACATTTGGTTTTCCATTGTCTGTTTTTGAAAATTAAGCTATACTTCCGCCATAAGTTCATCCATTTTCTACCATGTTCTCATAAACCAAGCTAAGATTTGAAAATTAAGAAAACTAAAATCCCATTTAGTAACCATTCGATTTTTCTTTCTTTTTTCTAAGTTTTTAAAAATTAAGCTTATCAATCCCTCTTCCACCCCAAATCTCTAAAAATAAACCAAATTTTTTAGAATTTGATGGGAGAATATAACTATGGTATTTGAGTAAGATGCAAATTATCTAAAAAAATTAGGGGGAAATATTCCTAATTTTAAAAAATTAAAAACTGAAAACAAAATAGTTATCCAATGGAGTACAGGAATTCAAGTCTTCCTTCAAACAAGATGAAAATCGTAGTTGGGATATTTGGAGTAATCATGCATAATTCTTAATTTAAAAAAAAAAAACATAATAAAGTAAAATAAAAATGGAATCTTTATCAAACAAGGCCGATGTAATTTTAAATTTTTTTGGAAAAAGAAAACCAAGACAAAAGAACTTGCTAAAAAGGACAAATGAGAGCATCTCAGATACGAGAAAACTTGATTAGAAGATCCGCCAAAAAGCTCTGAAAACGATCACCAATAAGAAGCTTTGAAAAGTGCATAGCAAGTTCGCCCTTGAACCAAAAACATAGCAAAATCACTTTCAAATGTAAATATTGTCATATTGAATCATTGAACGCCATGGATTGAGGAATCGAAAGGTTTGAGTCCTTAAGGGGTGGACTCATTGATCAGGATCCTAGTCAAAGTTAATCATTCTTATTGGTTCAAAATCACTTTGAGAATATGATCTCCTTCATTCAAAATCAGTTTAGATAGTAAAAGAATTGGGCTTGAAAGTGTAAAAATCAAATTTGAAATAGATTTTGAATAATTAAAAGCATGTTTTAGGTTGGTTGTAAATACATTACAAGATCACTCCTAATATGTTTATGGTAACAGTGGCTAGATTTTTTGTTTTTGGAGAACTCGTGCACTAATTTTATTAGGGTAATTGGTAATTTAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAGTATGCTACCTTTTCGTTTCTTGCCCCTAATTTGTCTTATGTTATTTGGACCTATCTTTTATAGGAACCAAATATTGAGGTTGGAATTATAGCAACTACCATTTCAGAAATGGAGGACATCATGAGTATTGGATAATTATGGTTAAACTACCAATTCTTATCCTCATATGTGGTAATCTTGACAAGTTTGCACATTCTTTGCGTCTGGATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTGAGTTTCTACTTCATTCTTCTGGAACTCTATTCAGGCCTCATATTTTTTAACACAATCCATTTGTATGGTGTAAACTTCTTTATTTCTTGTTCAGATTTTGATTTGAAGCCCAAAGAGCAGTTAAACATGAAAGGTTGGTTCTAGTCCCACCTAATTTGCGTTTTATTTAATGTTCAATTATATATACTTTTTGGAACACACACACAAGTCGAGATCATATACGTTTCATATTCGGAACTTTTTGTTTTATCTTCCCGTCATGTACTTTGGACTGAATCATTTGCAACGATAAACCAACACATTTGCTCCTGATTGGAGCCCCTTTTGTAGGTCATTTTCTTTTCTTTGTATACGCTGTATTTTTACATCTTTTTCCTCAAAACAACACACTTGCTCATTCTAATTTTTGCATATATGATTGGCTGTGAGTGATAAGAAAGTAGATGTAATTATGGTCGTGGATGTGAATGCAATATGTGTAGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAATGCTTTAGTTTTTATAACAGCATTTGATGATAGAATGAAGCCAACATGGATGATACTTGAAAATGTTGTGCTTTCAGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGGTATTCATGTTTGGAATTGGATTGCACTAATTTTTTATTGTAACTGTACTCTTTCCTAAATTTATGTATTAGCATTCCTCCCTACAATTTTCTCTCATAGGGTATTATTCAACTAGATTATTATTGTTATTGGATAGCACATGCTTAAATCAATATGGTGATTGGTTGTCATGTGGATTTGCAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA

mRNA sequence

ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA

Coding sequence (CDS)

ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA

Protein sequence

MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVSAPAAAIYPLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
Homology
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BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_022929768.1 (RNA-binding protein 42-like [Cucurbita moschata])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 186/242 (76.86%), Postives = 200/242 (82.64%), Query Frame = 0 

Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSA-----------------XXXXXXXXXXX 67
           APSS S SQF YS G  FP+PFHLQQSAP  A                 XXXXXXXXXXX
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAXXXXXXXXXXXXXXXXX 69

Query: 68  XXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQK 127
           XXXXXXLPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ 
Sbjct: 70  XXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 129

Query: 128 WEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFV 187
           WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFV
Sbjct: 130 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFV 189

Query: 188 SFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVV 233
           SF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++
Sbjct: 190 SFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSIL 249

[Close]
BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_023545858.1 (RNA-binding protein 42-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 3.0e-86
Identity = 186/242 (76.86%), Postives = 200/242 (82.64%), Query Frame = 0 

Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSAPVSA-----------------XXXXXXXXXXX 67
           APSS S SQF YS G  FP+PFHLQQSAP  A                 XXXXXXXXXXX
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSAPAPAGPQYPSPYVAAPXXXXXXXXXXXXXXXX 69

Query: 68  XXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQK 127
           XXXXXXLPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ 
Sbjct: 70  XXXXXXLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 129

Query: 128 WEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFV 187
           WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFV
Sbjct: 130 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFV 189

Query: 188 SFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVV 233
           SF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++
Sbjct: 190 SFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSIL 249

[Close]
BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_022997003.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 182/242 (75.21%), Postives = 197/242 (81.40%), Query Frame = 0 

Query: 8   APSSISSSQFAYSAGPCFPVPFHLQQSA-----------------PVSAXXXXXXXXXXX 67
           APSS S SQF YS G  FP+PFHLQQSA                 P + XXXXXXXXXXX
Sbjct: 10  APSSSSGSQFTYSNGSYFPLPFHLQQSATAPAGPQYPSPYVAAPGPPAXXXXXXXXXXXX 69

Query: 68  XXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQK 127
           XXX   LPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ 
Sbjct: 70  XXXAYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQS 129

Query: 128 WEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFV 187
           WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFV
Sbjct: 130 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFV 189

Query: 188 SFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVV 233
           SF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DY+ALER KN TQK  K+ K+S++
Sbjct: 190 SFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYDALERHKNHTQKKSKLPKKSIL 249

[Close]
BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_022965496.1 (RNA-binding protein 42-like [Cucurbita maxima])

HSP 1 Score: 318.5 bits (815), Expect = 1.8e-83
Identity = 185/256 (72.27%), Postives = 200/256 (78.12%), Query Frame = 0 

Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVS------------------- 60
           MA P F APS+ SSS   QF YS G  FP+PFHLQQSAP +                   
Sbjct: 1   MAGP-FSAPSAASSSSGAQFTYSNGSYFPLPFHLQQSAPAAPAPQXXXXXXXXXXXXXXX 60

Query: 61  --AXXXXXXXXXXXXXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKAD 120
              XXXXXXXXXXXXXXX  LPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+
Sbjct: 61  XXXXXXXXXXXXXXXXXXYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAE 120

Query: 121 TKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVV 180
           TK+KAIPRKAAGQ WEDPTL +WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVV
Sbjct: 121 TKKKAIPRKAAGQSWEDPTLTEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVV 180

Query: 181 RDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKN 233
           RDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R KN
Sbjct: 181 RDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGRYKN 240

[Close]
BLAST of Cla97C06G119170 vs. NCBI nr
Match: XP_022149948.1 (RNA-binding protein 42 [Momordica charantia])

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 183/254 (72.05%), Postives = 201/254 (79.13%), Query Frame = 0 

Query: 1   MAAPCFWAPSSISS---SQFAYSAGPCFPVPFHLQQSAPVS------------------- 60
           MA P   APS+ SS   +QF +S    FP+PFHLQQSAP +                   
Sbjct: 1   MAGPSSSAPSAASSXSGAQFTFSNASYFPLPFHLQQSAPPAXXXXXXXXXXXXXXXXXXX 60

Query: 61  AXXXXXXXXXXXXXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTK 120
            XXXXXXXXXXXXXXX  LPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK
Sbjct: 61  XXXXXXXXXXXXXXXXYTLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 120

Query: 121 RKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRD 180
           +KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS++FSRFPSFNMARVVRD
Sbjct: 121 KKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKSFSRFPSFNMARVVRD 180

Query: 181 KRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKT 233
           KRTGKTKGYGFVSF+NP DL AALKEMNGKYVGNRPIKLRKS WK+R DYEALER KN T
Sbjct: 181 KRTGKTKGYGFVSFSNPTDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALERHKNHT 240

[Close]
BLAST of Cla97C06G119170 vs. TrEMBL
Match: tr|A0A2R6QAU4|A0A2R6QAU4_ACTCH (RNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc20879 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.3e-82
Identity = 178/239 (74.48%), Postives = 195/239 (81.59%), Query Frame = 0 

Query: 8   APSSISSS------QFAYSAGPCFPVPFHLQQSAPVSA--------XXXXXXXXXXXXXX 67
           AP+S SSS      QF YS    FPVPFHLQQ   V+A        XXXXX   XXXXXX
Sbjct: 4   APASASSSNPSVSAQFTYSNAAYFPVPFHLQQQPYVAAPPPSAXXXXXXXXYQAXXXXXX 63

Query: 68  XXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWED 127
           XX LPQYHQAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ WED
Sbjct: 64  XXSLPQYHQAQQLFQRDAQSITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQNWED 123

Query: 128 PTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT 187
           PTLA+WPENDYRLFCGDLGNEVNDDVLS+AF+RFPSFNMA+VVRDKRTGKTKGYGFVSF+
Sbjct: 124 PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFARFPSFNMAKVVRDKRTGKTKGYGFVSFS 183

Query: 188 NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK 233
           NPLDL AALKEMNGKYVGNRPIKLRKS WK+R D EALER K+ + K  K+ K+SV+HK
Sbjct: 184 NPLDLAAALKEMNGKYVGNRPIKLRKSNWKERTDNEALERQKHHSHKKPKLAKKSVLHK 242

[Close]
BLAST of Cla97C06G119170 vs. TrEMBL
Match: tr|V4TR47|V4TR47_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021882mg PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 3.9e-82
Identity = 174/242 (71.90%), Postives = 195/242 (80.58%), Query Frame = 0 

Query: 10  SSISSSQFAYSAGPC---------FPVPFHLQQSAPVSA----------XXXXXXXXXXX 69
           SS SS QF Y+A P          FP+PFHLQQ+ P +           XXXXXXXXXXX
Sbjct: 6   SSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAXXXXXXXXXXXXX 65

Query: 70  XXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQK 129
           XXX   LPQYHQAQQLF +DAQ ITPEALE VK ALA  ++EHKA+TK+K+IPRKAAGQ 
Sbjct: 66  XXXVYSLPQYHQAQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRKAAGQT 125

Query: 130 WEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFV 189
           WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VVRDKRTGKTKGYGF+
Sbjct: 126 WEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYGFI 185

Query: 190 SFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVV 233
           SF NP D+ AALKEMNGKYVGNRPIKLRKSKW++R D+EALER KN  QK  K+ K+SV+
Sbjct: 186 SFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLSKKSVL 245

[Close]
BLAST of Cla97C06G119170 vs. TrEMBL
Match: tr|A0A2C9VAX4|A0A2C9VAX4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G148000 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 5.1e-82
Identity = 162/235 (68.94%), Postives = 180/235 (76.60%), Query Frame = 0 

Query: 9   PSSISSSQFAYSAGPC------FPVPFHLQQS-----APVSAXXXXXXXXXXXXXXXXXL 68
           PS+ S SQF Y+A         FP+PFHLQQS     AP +                  L
Sbjct: 11  PSASSGSQFTYTAATATPNTSYFPMPFHLQQSVQPYVAPPAVQPVGASVYTAPVGPVYSL 70

Query: 69  PQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLA 128
           PQ+ QAQQLF +DAQ ITPEALEGVK ALA  E+EHK +TK+KAIPRKAAGQ WEDPTL+
Sbjct: 71  PQFQQAQQLFQRDAQTITPEALEGVKAALASSEIEHKQETKKKAIPRKAAGQAWEDPTLS 130

Query: 129 DWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLD 188
           DWPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF+NP D
Sbjct: 131 DWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFSNPSD 190

Query: 189 LTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK 233
           L AALKEMNGKYVGNRPIKLRKS WK+R D++ALER KN  QK  K  ++SV+HK
Sbjct: 191 LAAALKEMNGKYVGNRPIKLRKSNWKERTDHDALERQKNHHQKKPKPPRKSVLHK 245

[Close]
BLAST of Cla97C06G119170 vs. TrEMBL
Match: tr|A0A2I4E3H6|A0A2I4E3H6_9ROSI (RNA-binding protein 42 OS=Juglans regia OX=51240 GN=LOC108985927 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 1.1e-81
Identity = 164/244 (67.21%), Postives = 179/244 (73.36%), Query Frame = 0 

Query: 12  ISSSQFAYS-------AGPCFPVPFHLQQS----------------APVSAXXXXXXXXX 71
           +SSSQF YS        G  FP+PFHLQQS                 PV A         
Sbjct: 1   MSSSQFNYSNATSSSTTGSYFPMPFHLQQSPATALPQYSTPNMGPALPVVAPVYPAAPAP 60

Query: 72  XXXXXXXXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAG 131
                   LPQYHQAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KA+PRKAAG
Sbjct: 61  APSTAVYTLPQYHQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAVPRKAAG 120

Query: 132 QKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYG 191
           Q WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VVRDKRTGKTKGYG
Sbjct: 121 QTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTKGYG 180

Query: 192 FVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRS 233
           FVSF NP DL AALKEMNGKYVGNRPIKLRKS W++RID EA ER KN  QK  K+ K+S
Sbjct: 181 FVSFANPADLAAALKEMNGKYVGNRPIKLRKSNWRERIDTEAAERQKNLNQKKPKLSKKS 240

[Close]
BLAST of Cla97C06G119170 vs. TrEMBL
Match: tr|A0A2R6PYK0|A0A2R6PYK0_ACTCH (RNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc25349 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.9e-81
Identity = 179/238 (75.21%), Postives = 197/238 (82.77%), Query Frame = 0 

Query: 9   PSSISSS------QFAYSAGPCFPVPFHLQQSAPVSA--------XXXXXXXXXXXXXXX 68
           P+S SSS      QF YS+   FPVPFHLQQ   V+A        XXXXXXXXXXXXXXX
Sbjct: 5   PASASSSNPSVSAQFTYSSASYFPVPFHLQQQPYVAAPPAXXXXXXXXXXXXXXXXXXXX 64

Query: 69  XXLPQYHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDP 128
           X LPQY QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK+KAIPRKAAGQ WEDP
Sbjct: 65  XSLPQYQQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETKKKAIPRKAAGQNWEDP 124

Query: 129 TLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTN 188
           TLA+WPENDYRLFCGDLGNEVNDDVLS+AF+RFPSFNMA+VVRDKRTGKTKGYGFVSF+N
Sbjct: 125 TLAEWPENDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMAKVVRDKRTGKTKGYGFVSFSN 184

Query: 189 PLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK 233
           PLDL AALKEMNGKYVGNRPIKLRKS WK+R D EALER K+ + K  K+ K+SV+HK
Sbjct: 185 PLDLAAALKEMNGKYVGNRPIKLRKSNWKERTDNEALERQKHHSHKKPKLAKKSVLHK 242

[Close]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match: sp|Q0P5L0|RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-42
Identity = 83/128 (64.84%), Postives = 102/128 (79.69%), Query Frame = 0 

Query: 78  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 137
           ALE V   L+ D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 364

Query: 138 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 197
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 365 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 424

Query: 198 RKSKWKDR 206
           RKS WKDR
Sbjct: 425 RKSMWKDR 430

[Close]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match: sp|Q9BTD8|RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-42
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 78  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 137
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 337 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 396

Query: 138 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 197
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 397 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 456

Query: 198 RKSKWKDR 206
           RKS WKDR
Sbjct: 457 RKSMWKDR 462

[Close]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match: sp|Q91V81|RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-42
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 78  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 137
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 138 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 197
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 198 RKSKWKDR 206
           RKS WKDR
Sbjct: 451 RKSMWKDR 456

[Close]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match: sp|Q6AXT7|RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 9.0e-42
Identity = 83/128 (64.84%), Postives = 101/128 (78.91%), Query Frame = 0 

Query: 78  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 137
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 138 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 197
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 198 RKSKWKDR 206
           RKS WKDR
Sbjct: 451 RKSMWKDR 456

[Close]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match: sp|Q66KL9|RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40
Identity = 79/130 (60.77%), Postives = 100/130 (76.92%), Query Frame = 0 

Query: 76  PEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEV 135
           P   E V   +  D+ + K +  ++ I R AAG  WED +L +W  +D+R+FCGDLGNEV
Sbjct: 246 PVQPEVVLEPVQEDKKKTKPEKLKRCI-RTAAGTSWEDQSLLEWESDDFRIFCGDLGNEV 305

Query: 136 NDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPI 195
           NDD+L+RAFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPI
Sbjct: 306 NDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPI 365

Query: 196 KLRKSKWKDR 206
           KLRKS+WKDR
Sbjct: 366 KLRKSQWKDR 374

[Close]
BLAST of Cla97C06G119170 vs. TAIR10
Match: AT3G04500.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 277.7 bits (709), Expect = 6.5e-75
Identity = 132/173 (76.30%), Postives = 149/173 (86.13%), Query Frame = 0 

Query: 60  YHQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADW 119
           Y QA QLF +DAQ ITPEALE VK ALA  E EHKA+TK++AIPRKAAGQ WEDPTL++W
Sbjct: 73  YQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSWEDPTLSEW 132

Query: 120 PENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLT 179
           PENDYRLFCGDLGNEVNDDVLS+AF+RFP+FNMA+V+RDKRTGKTKGYGFVSF NP DL 
Sbjct: 133 PENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLA 192

Query: 180 AALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK 233
           AALKEMNGKYVGNRPIKLRKS WK+R D EA ER K+ + K  K  K+S++HK
Sbjct: 193 AALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILHK 245

[Close]
BLAST of Cla97C06G119170 vs. TAIR10
Match: AT3G14100.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 4.9e-14
Identity = 34/73 (46.58%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 124 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 183
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 184 EMNGKYVGNRPIK 197
           EMNGK++ +R I+
Sbjct: 204 EMNGKWLSSRQIR 216

[Close]
BLAST of Cla97C06G119170 vs. TAIR10
Match: AT1G17370.1 (oligouridylate binding protein 1B)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-13
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 0 

Query: 124 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 183
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 184 EMNGKYVGNRPIK 197
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

[Close]
BLAST of Cla97C06G119170 vs. TAIR10
Match: AT1G54080.2 (oligouridylate-binding protein 1A)

HSP 1 Score: 71.6 bits (174), Expect = 7.0e-13
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 124 YRLFCGDLGNEVNDDVLSRAFSRFPS----FNMARVVRDKRTGKTKGYGFVSFTNPLDLT 183
           + +F GDL  EV D  L  +FS F S    +  ARV+ D++TG+++G+GFVSF N  D  
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207

Query: 184 AALKEMNGKYVGNRPIK 197
            A+ EMNGK+V +R I+
Sbjct: 208 TAINEMNGKWVSSRQIR 224

[Close]
BLAST of Cla97C06G119170 vs. TAIR10
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 35/76 (46.05%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 123 DYRLFCGDLGNEVNDDVLSRAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAA 182
           D  +F GDL  +V D +L   FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 183 LKEMNGKYVGNRPIKL 198
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276

The following BLAST results are available for this feature:
BLAST of Cla97C06G119170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022929768.13.0e-8676.86RNA-binding protein 42-like [Cucurbita moschata][more]
XP_023545858.13.0e-8676.86RNA-binding protein 42-like [Cucurbita pepo subsp. pepo][more]
XP_022997003.11.1e-8575.21RNA-binding protein 42-like [Cucurbita maxima][more]
XP_022965496.11.8e-8372.27RNA-binding protein 42-like [Cucurbita maxima][more]
XP_022149948.12.4e-8372.05RNA-binding protein 42 [Momordica charantia][more]
BLAST of Cla97C06G119170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2R6QAU4|A0A2R6QAU4_ACTCH2.3e-8274.48RNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac... [more]
tr|V4TR47|V4TR47_9ROSI3.9e-8271.90Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021882mg PE=4 ... [more]
tr|A0A2C9VAX4|A0A2C9VAX4_MANES5.1e-8268.94Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G148000 PE=4 SV=... [more]
tr|A0A2I4E3H6|A0A2I4E3H6_9ROSI1.1e-8167.21RNA-binding protein 42 OS=Juglans regia OX=51240 GN=LOC108985927 PE=4 SV=1[more]
tr|A0A2R6PYK0|A0A2R6PYK0_ACTCH1.9e-8175.21RNA-binding protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Ac... [more]
BLAST of Cla97C06G119170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0P5L0|RBM42_BOVIN6.9e-4264.84RNA-binding protein 42 OS=Bos taurus OX=9913 GN=RBM42 PE=2 SV=1[more]
sp|Q9BTD8|RBM42_HUMAN9.0e-4264.84RNA-binding protein 42 OS=Homo sapiens OX=9606 GN=RBM42 PE=1 SV=1[more]
sp|Q91V81|RBM42_MOUSE9.0e-4264.84RNA-binding protein 42 OS=Mus musculus OX=10090 GN=Rbm42 PE=1 SV=1[more]
sp|Q6AXT7|RBM42_RAT9.0e-4264.84RNA-binding protein 42 OS=Rattus norvegicus OX=10116 GN=Rbm42 PE=1 SV=1[more]
sp|Q66KL9|RBM42_XENTR2.9e-4060.77RNA-binding protein 42 OS=Xenopus tropicalis OX=8364 GN=rbm42 PE=2 SV=1[more]
BLAST of Cla97C06G119170 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04500.16.5e-7576.30RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G14100.14.9e-1446.58RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G17370.11.9e-1343.84oligouridylate binding protein 1B[more]
AT1G54080.27.0e-1345.45oligouridylate-binding protein 1A[more]
AT3G19130.11.6e-1246.05RNA-binding protein 47B[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR034215RBM42_RRM
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G119170.1Cla97C06G119170.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 125..198
e-value: 5.5E-20
score: 82.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 126..196
e-value: 5.1E-19
score: 67.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 124..202
score: 16.159
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 80..207
e-value: 8.9E-23
score: 83.0
NoneNo IPR availablePANTHERPTHR44834:SF3RRM-CONTAINING PROTEIN-RELATEDcoord: 8..232
NoneNo IPR availablePANTHERPTHR44834FAMILY NOT NAMEDcoord: 8..232
IPR034215RBM42, RNA recognition motifCDDcd12383RRM_RBM42coord: 118..200
e-value: 6.73483E-56
score: 174.333
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 108..204

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G119170ClCG06G009560Watermelon (Charleston Gray)wcgwmbB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G119170Cucumber (Gy14) v2cgybwmbB079
Cla97C06G119170Cucumber (Gy14) v1cgywmbB508
Cla97C06G119170Wild cucumber (PI 183967)cpiwmbB083
Cla97C06G119170Cucumber (Chinese Long) v3cucwmbB079
Cla97C06G119170Cucumber (Chinese Long) v2cuwmbB082
Cla97C06G119170Bottle gourd (USVL1VR-Ls)lsiwmbB027
Cla97C06G119170Bottle gourd (USVL1VR-Ls)lsiwmbB378
Cla97C06G119170Melon (DHL92) v3.6.1medwmbB252
Cla97C06G119170Melon (DHL92) v3.5.1mewmbB266
Cla97C06G119170Watermelon (97103) v1wmwmbB406