ClCG06G009560 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G009560
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-binding protein
LocationCG_Chr06 : 16320832 .. 16324127 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCTTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGTTTCTAATCCATCTATTTGGAATTTCACTTATTTGCTTCACTTTATATATATATTTGATCTCTCAAGTTGAAGAAGATTGTGCATATTTATTTCCGATATTTTGAATTGTTTCTAATGCTTTTCTTCTTTAGTTACTGTGCCGCAAAATAACATTTGGTTTTCCATTGTCTGTTTTTGAAAATTAAGCTATACTTCCGCCATAAGTTCATCCATTTTCTACCATGTTCTCATAAACCAAGCTAAGATTTGAAAATTAAGAAAACTAAAATCCCATTTAGTAACCATTCGATTTTTCTTTCTTTTTTCTAAGTTTTTAAAAATTAAGCTTATCAATCCCTCTTCCACCCCAAATCTCTAAAAATAAACCAAATTTTTTAGAATTTGATGGGAGAATATAACTATGGTATTTGAGTAAGATGCAAATTATCTAAAAAAATTAGGGGGAAATATTCCTAATTTTAAAAAATTAAAAACTGAAAACAAAATAGTTATCCAATGGAGTACAGGAATTCAAGTCTTCCTTCAAACAAGATGAAAATCGTAGTTGGGATATTTGGAGTAATCATGCATAATTCTTAATTTAAAAAAAAAAAACATAATAAAGTAAAATAAAAATGGAATCTTTATCAAACAAGGCCGATGTAATTTTAAATTTTTTTGGAAAAAGAAAACCAAGACAAAAGAACTTGCTAAAAAGGACAAATGAGAGCATCTCAGATACGAGAAAACTTGATTAGAAGATCCGCCAAAAAGCTCTGAAAACGATCACCAATAAGAAGCTTTGAAAAGTGCATAGCAAGTTCGCCCTTGAACCAAAAACATAGCAAAATCACTTTCAAATGTAAATATTGTCATATTGAATCATTGAACGCCATGGATTGAGGAATCGAAAGGTTTGAGTCCTTAAGGGGTGGACTCATTGATCAGGATCCTAGTCAAAGTTAATCATTCTTATTGGTTCAAAATCACTTTGAGAATATGATCTCCTTCATTCAAAATCAGTTTAGATAGTAAAAGAATTGGGCTTGAAAGTGTAAAAATCAAATTTGAAATAGATTTTGAATAATTAAAAGCATGTTTTAGGTTGGTTGTAAATACATTACAAGATCACTCCTAATATGTTTATGGTAACAGTGGCTAGATTTTTTGTTTTTGGAGAACTCGTGCACTAATTTTATTAGGGTAATTGGTAATTTAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAGTATGCTACCTTTTCGTTTCTTGCCCCTAATTTGTCTTATGTTATTTGGACCTATCTTTTATAGGAACCAAATATTGAGGTTGGAATTATAGCAACTACCATTTCAGAAATGGAGGACATCATGAGTATTGGATAATTATGGTTAAACTACCAATTCTTATCCTCATATGTGGTAATCTTGACAAGTTTGCACATTCTTTGCGTCTGGATTATGCAGATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTGAGTTTCTACTTCATTCTTCTGGAACTCTATTCAGGCCTCATATTTTTTAACACAATCCATTTGTATGGTGTAAACTTCTTTATTTCTTGTTCAGATTTTGATTTGAAGCCCAAAGAGCAGTTAAACATGAAAGGTTGGTTCTAGTCCCACCTAATTTGCGTTTTATTTAATGTTCAATTATATATACTTTTTGGAACACACACACAAGTCGAGATCATATACGTTTCATATTCGGAACTTTTTGTTTTATCTTCCCGTCATGTACTTTGGACTGAATCATTTGCAACGATAAACCAACACATTTGCTCCTGATTGGAGCCCCTTTTGTAGGTCATTTTCTTTTCTTTGTATACGCTGTATTTTTACATCTTTTTCCTCAAAACAACACACTTGCTCATTCTAATTTTTGCATATATGATTGGCTGTGAGTGATAAGAAAGTAGATGTAATTATGGTCGTGGATGTGAATGCAATATGTGTAGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAATGCTTTAGTTTTTATAACAGCATTTGATGATAGAATGAAGCCAACATGGATGATACTTGAAAATGTTGTGCTTTCAGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGGTATTCATGTTTGGAATTGGATTGCACTAATTTTTTATTGTAACTGTACTCTTTCCTAAATTTATGTATTAGCATTCCTCCCTACAATTTTCTCTCATAGGGTATTATTCAACTAGATTATTATTGTTATTGGATAGCACATGCTTAAATCAATATGGTGATTGGTTGTCATGTGGATTTGCAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGAAAAGAAGGAGCATTGATGAAAATTCTCACGTATCGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGTCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAATTTTAGATATATTTAATATCTTACACAATTTTAACATCTGTTTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCATTCATTGTTTTCAAATATGTGGTTTGTAATAG

mRNA sequence

AACTGACCGATCTTTCTAGAACTCTGAATCCCTCTCTTTCCCCTTCACATTTTTTTGACAAACAACCTATCCATCTTCTTGAGATCAACATCGAAATCCTTCGCTCAAGTCTGAATTCTCCGAATCTCAAATCCCCATTTCAGCTTTCCTCTTTTGTTGCAATTTGTTATCTATACCTTCGTCCATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGAAAAGAAGGAGCATTGATGAAAATTCTCACGTATCGTTTTTGCCATTCCCTTCATGCTTTTCTTTTGTAAATTATAAGGGTCTCTTTGTTTCTTACCTGTTTGTTTCCTGAAATTTTAGATATATTTAATATCTTACACAATTTTAACATCTGTTTGGGAAAATTTTGAAAATAAGGGATTTTTGAAGTTAGAGTTAGCATTCATTGTTTTCAAATATGTGGTTTGTAATAG

Coding sequence (CDS)

ATGGCGGCCCCGTGTTTCTGGGCTCCTTCGTCCATTTCTTCTTCCCAATTTGCTTACTCCGCCGGGCCCTGCTTTCCTGTTCCCTTTCATCTTCAACAATCGGCCCCTGTTTCCGCCGCTGCTGCAACCACGGCCCCTGTTTCTGCTCCCGCTGCTGCTATATACCCTCTCCCTCAGTACCACCAGGTTGGTGTTGAACAGGCGCAGCAGTTGTTTCATAAAGACGCCCAAATAATCACACCTGAAGCACTTGAGGGTGTAAAAGTTGCCCTCGCAAGAGATGAAATGGAGCACAAAGCAGACACGAAAAGGAAAGCTATTCCTCGTAAAGCTGCTGGGCAGAAATGGGAGGATCCTACACTTGCTGATTGGCCTGAAAATGATTATCGGCTGTTTTGTGGCGATCTTGGCAACGAGGTGAATGATGATGTTCTTTCTCGAGCATTTTCACGATTTCCATCCTTTAACATGGCCAGGGTTGTGAGAGATAAGCGAACAGGCAAAACAAAGGGATACGGTTTTGTTAGCTTCACCAATCCTTTGGATCTCACTGCAGCACTCAAAGAAATGAATGGTAAATACGTTGGGAATAGGCCAATTAAACTTAGGAAAAGCAAGTGGAAGGACAGAATTGATTACGAGGCTCTTGAAAGACTAAAGAATAAAACTCAAAAGAATTGGAAGGTAGAGAAGAGAAGTGTGGTGCATAAGTGA

Protein sequence

MAAPCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK
Homology
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BLAST of ClCG06G009560 vs. Swiss-Prot
Match: RBM42_XENLA (RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-42
Identity = 99/203 (48.77%), Postives = 125/203 (61.58%), Query Frame = 1 

Query: 22  GPCFPVPFHLQQSAP------VSAAAA--TTAPVSAPAAAIYPLPQYHQVGVEQAQQLFH 81
           GP  P P  + QSAP      + AA    T  PV  P   I   P    +  E+ + L +
Sbjct: 177 GPLPPPPRPMVQSAPKINPTVIQAAPTVYTAPPVRKPEEEIVEPP----IIPEEKESLSY 236

Query: 82  KDAQI------ITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPEN 141
           ++  I      I P   E V   +  D+ + K +  ++ I R AAG  WED +L +W  +
Sbjct: 237 EETVIGPSMPEIEPVQPEVVLEPVQEDKKKAKPEKLKRCI-RTAAGTSWEDQSLLEWEPD 296

Query: 142 DYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAAL 201
           D+R+FCGDLGNEVNDD+L+RAFSR+PSF  A+V+RDKRTGKTKGYGFVSF +P D   A 
Sbjct: 297 DFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAT 356

Query: 202 KEMNGKYVGNRPIKLRKSKWKDR 211
           +EMNGKYVG+RPIKLRKS+WKDR
Sbjct: 357 REMNGKYVGSRPIKLRKSQWKDR 374

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BLAST of ClCG06G009560 vs. Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-42
Identity = 83/128 (64.84%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L+ D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 305 ALE-VPEPLSEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 364

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 365 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 424

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 425 RKSMWKDR 430

[Close]
BLAST of ClCG06G009560 vs. Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-42
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1 

Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 451 RKSMWKDR 456

[Close]
BLAST of ClCG06G009560 vs. Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-42
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1 

Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 337 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 396

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 397 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 456

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 457 RKSMWKDR 462

[Close]
BLAST of ClCG06G009560 vs. Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.9e-42
Identity = 83/128 (64.84%), Postives = 99/128 (77.34%), Query Frame = 1 

Query: 83  ALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVND 142
           ALE V   L  D+ + K +  ++ I R AAG  WEDP+L +W  +D+R+FCGDLGNEVND
Sbjct: 331 ALE-VPEPLGEDKKKGKPEKLKRCI-RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVND 390

Query: 143 DVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKL 202
           D+L+RAFSRFPSF  A+V+RDKRTGKTKGYGFVSF +P D   A++EMNGKYVG+RPIKL
Sbjct: 391 DILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 450

Query: 203 RKSKWKDR 211
           RKS WKDR
Sbjct: 451 RKSMWKDR 456

[Close]
BLAST of ClCG06G009560 vs. TrEMBL
Match: A0A0A0LH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 6.2e-90
Identity = 178/259 (68.73%), Postives = 193/259 (74.52%), Query Frame = 1 

Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSA------------------ 60
           MA P   APSS SSS   QF YS G  FP+PFHLQQSAP  A                  
Sbjct: 1   MAGPSS-APSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVP 60

Query: 61  -AAATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEH 120
              A   P  AP  A+Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EH
Sbjct: 61  LPVAPVYPAPAPPPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR 240

[Close]
BLAST of ClCG06G009560 vs. TrEMBL
Match: F6H614_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 170/254 (66.93%), Postives = 191/254 (75.20%), Query Frame = 1 

Query: 10  SSISSSQFAYSAGPCFPVPFHLQQSAPVSA--------------------------AAAT 69
           S+ SSSQF YS    FP+PFHLQQS P++A                          A A 
Sbjct: 9   STSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPVKIPAVAP 68

Query: 70  TAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTK 129
             P  AP A +Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK
Sbjct: 69  VYPAPAPVAGVYSLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 128

Query: 130 RKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRD 189
           +KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VVRD
Sbjct: 129 KKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 188

Query: 190 KRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKT 238
           KRTGKT+GYGFVSF+NPLDL AALKEMNGKYVGNRPIKLRKS W++R D+EALER KN  
Sbjct: 189 KRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKNHI 248

[Close]
BLAST of ClCG06G009560 vs. TrEMBL
Match: V4TR47_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021882mg PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 4.5e-88
Identity = 169/247 (68.42%), Postives = 193/247 (78.14%), Query Frame = 1 

Query: 10  SSISSSQFAYSAGPC---------FPVPFHLQQSAPVSAA-----AATTAPV-----SAP 69
           SS SS QF Y+A P          FP+PFHLQQ+ P + +     AA  APV     +AP
Sbjct: 6   SSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAPVVPSVYAAP 65

Query: 70  AAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRK 129
            A +Y LPQYHQ     AQQLF +DAQ ITPEALE VK ALA  ++EHKA+TK+K+IPRK
Sbjct: 66  VAPVYSLPQYHQ-----AQQLFQRDAQTITPEALESVKAALASSDIEHKAETKKKSIPRK 125

Query: 130 AAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTK 189
           AAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VVRDKRTGKTK
Sbjct: 126 AAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRDKRTGKTK 185

Query: 190 GYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVE 238
           GYGF+SF NP D+ AALKEMNGKYVGNRPIKLRKSKW++R D+EALER KN  QK  K+ 
Sbjct: 186 GYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKNHNQKKPKLS 245

[Close]
BLAST of ClCG06G009560 vs. TrEMBL
Match: B9S7K8_RICCO (Rrm-containing protein, putative OS=Ricinus communis GN=RCOM_0609090 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 9.9e-88
Identity = 169/239 (70.71%), Postives = 189/239 (79.08%), Query Frame = 1 

Query: 9   PSSISSSQFAYSA-------GPCFPVPFHLQQSA--PVSAAAATTAPV-SAPAAAIYPLP 68
           PS+ SSSQF Y+           FP+PFHLQQ    P +      APV SAP  ++Y LP
Sbjct: 5   PSASSSSQFTYTTTTTPTPNNSIFPLPFHLQQPPLQPYAPVQPVVAPVYSAPVGSVYTLP 64

Query: 69  QYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKWED 128
           QY     +QAQQLF +DAQ ITPEALEGVK ALA  E+EHKA+TK+KA+PRKAAGQ WED
Sbjct: 65  QY-----QQAQQLFQRDAQTITPEALEGVKAALASSEIEHKAETKKKAVPRKAAGQSWED 124

Query: 129 PTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFT 188
           PTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMARVVRDKRTGKTKGYGFVSF 
Sbjct: 125 PTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFC 184

Query: 189 NPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVHK 238
           NP DL AALKEMNGKYVGNRPIKLRKS WK+R DYEALE+ K++ QK  K  K+SV+HK
Sbjct: 185 NPSDLAAALKEMNGKYVGNRPIKLRKSNWKERTDYEALEKQKSQHQKKPKPSKKSVLHK 238

[Close]
BLAST of ClCG06G009560 vs. TrEMBL
Match: A0A061F8S2_THECC (RNA-binding family protein OS=Theobroma cacao GN=TCM_026188 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 170/242 (70.25%), Postives = 191/242 (78.93%), Query Frame = 1 

Query: 9   PSSISSSQFAY--SAGPC-FPVPFHLQQSA----------PVSAAAATTAPVSAPAAAIY 68
           PSS SSSQF Y  +A P  FP+PFHLQQ A          PV+ A    APV AP   +Y
Sbjct: 11  PSSSSSSQFTYQTTANPSYFPLPFHLQQQAQPYAPPAQPVPVAPAPVYPAPV-APVPGVY 70

Query: 69  PLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQK 128
            LPQY     +QAQQLF +DAQI+TPEALE VK ALA  E+EHKA+TK+K IPRKAAGQ 
Sbjct: 71  SLPQY-----QQAQQLFQRDAQIVTPEALESVKAALASSEIEHKAETKKKVIPRKAAGQS 130

Query: 129 WEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFV 188
           WEDPTLA+WPEND+RLFCGDLGNEVNDDVLS+AF+RFPSFNMARVVRDKRTGKTKGYGFV
Sbjct: 131 WEDPTLAEWPENDFRLFCGDLGNEVNDDVLSKAFARFPSFNMARVVRDKRTGKTKGYGFV 190

Query: 189 SFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVV 238
           SF NP DL AALKEMNGKYVGNRPIKLRKS WK+RID EALER +N+ QK  K +K+ ++
Sbjct: 191 SFANPSDLAAALKEMNGKYVGNRPIKLRKSNWKERIDQEALERQRNQNQKKPKPQKKGIL 246

[Close]
BLAST of ClCG06G009560 vs. TAIR10
Match: AT3G04500.1 (AT3G04500.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 305.8 bits (782), Expect = 2.3e-83
Identity = 153/241 (63.49%), Postives = 177/241 (73.44%), Query Frame = 1 

Query: 4   PCFWAPSSISSSQFAYSAGPCFPVPFHLQQSAPVSAAAATTAPV-SAPAAAIYPLPQ--- 63
           P   + SS SSSQ+ Y+A   +  P+   Q    + + A  APV S P A +YP P    
Sbjct: 5   PSSGSSSSSSSSQYTYAANSYYSAPYQPPQPYAAAPSPAVPAPVASIPGATVYPQPVGPV 64

Query: 64  ---YHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTKRKAIPRKAAGQKW 123
              Y     +QA QLF +DAQ ITPEALE VK ALA  E EHKA+TK++AIPRKAAGQ W
Sbjct: 65  PAVYAYPQYQQAHQLFQRDAQTITPEALENVKAALASSETEHKAETKKRAIPRKAAGQSW 124

Query: 124 EDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVS 183
           EDPTL++WPENDYRLFCGDLGNEVNDDVLS+AF+RFP+FNMA+V+RDKRTGKTKGYGFVS
Sbjct: 125 EDPTLSEWPENDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVS 184

Query: 184 FTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKTQKNWKVEKRSVVH 238
           F NP DL AALKEMNGKYVGNRPIKLRKS WK+R D EA ER K+ + K  K  K+S++H
Sbjct: 185 FLNPADLAAALKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTVKKSILH 244

[Close]
BLAST of ClCG06G009560 vs. TAIR10
Match: AT3G14100.1 (AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 72.8 bits (177), Expect = 3.2e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D  L ++FS F S + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203

Query: 189 EMNGKYVGNRPIK 202
           EMNGK++ +R I+
Sbjct: 204 EMNGKWLSSRQIR 216

[Close]
BLAST of ClCG06G009560 vs. TAIR10
Match: AT1G17370.1 (AT1G17370.1 oligouridylate binding protein 1B)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-12
Identity = 32/73 (43.84%), Postives = 49/73 (67.12%), Query Frame = 1 

Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALK 188
           + +F GDL  EV D +L   FS +P+ + ARV+ D++TG+++G+GFVSF N  D   A+ 
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198

Query: 189 EMNGKYVGNRPIK 202
           E+ GK++G+R I+
Sbjct: 199 EITGKWLGSRQIR 211

[Close]
BLAST of ClCG06G009560 vs. TAIR10
Match: AT1G54080.2 (AT1G54080.2 oligouridylate-binding protein 1A)

HSP 1 Score: 68.9 bits (167), Expect = 4.7e-12
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 129 YRLFCGDLGNEVNDDVLSRAFSRFPS----FNMARVVRDKRTGKTKGYGFVSFTNPLDLT 188
           + +F GDL  EV D  L  +FS F S    +  ARV+ D++TG+++G+GFVSF N  D  
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207

Query: 189 AALKEMNGKYVGNRPIK 202
            A+ EMNGK+V +R I+
Sbjct: 208 TAINEMNGKWVSSRQIR 224

[Close]
BLAST of ClCG06G009560 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 68.2 bits (165), Expect = 7.9e-12
Identity = 35/76 (46.05%), Postives = 47/76 (61.84%), Query Frame = 1 

Query: 128 DYRLFCGDLGNEVNDDVLSRAFS-RFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAA 187
           D  +F GDL  +V D +L   FS R+PS   A+VV D  TG++KGYGFV F +  + + A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260

Query: 188 LKEMNGKYVGNRPIKL 203
           L EMNG Y  NR +++
Sbjct: 261 LTEMNGAYCSNRQMRV 276


HSP 2 Score: 39.7 bits (91), Expect = 3.0e-03
Identity = 20/67 (29.85%), Postives = 34/67 (50.75%), Query Frame = 1 

Query: 131 LFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEM 190
           L+ GDL + +++  L   FS     +  +V+R+K T +++GYGFV F +       L+  
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169

Query: 191 NGKYVGN 198
           +G  + N
Sbjct: 170 SGSVMPN 176

[Close]
BLAST of ClCG06G009560 vs. NCBI nr
Match: gi|449470234|ref|XP_004152823.1| (PREDICTED: RNA-binding protein 42 [Cucumis sativus])

HSP 1 Score: 338.6 bits (867), Expect = 8.9e-90
Identity = 178/259 (68.73%), Postives = 193/259 (74.52%), Query Frame = 1 

Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSA------------------ 60
           MA P   APSS SSS   QF YS G  FP+PFHLQQSAP  A                  
Sbjct: 1   MAGPSS-APSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPQYSSPYVAPPGPPPVP 60

Query: 61  -AAATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEH 120
              A   P  AP  A+Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EH
Sbjct: 61  LPVAPVYPAPAPPPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR 240

[Close]
BLAST of ClCG06G009560 vs. NCBI nr
Match: gi|659082432|ref|XP_008441837.1| (PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 8.9e-90
Identity = 178/259 (68.73%), Postives = 193/259 (74.52%), Query Frame = 1 

Query: 1   MAAPCFWAPSSISSS---QFAYSAGPCFPVPFHLQQSAPVSAA----------------- 60
           MA P   APSS SSS   QF YS G  FP+PFHLQQSAP  A                  
Sbjct: 1   MAGPSS-APSSASSSSASQFTYSNGSYFPLPFHLQQSAPAPAPPPYPSPYVAPPGPPPVP 60

Query: 61  --AATTAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEH 120
              A   P  AP  A+Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EH
Sbjct: 61  LPVAPVYPAPAPPPAVYTLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEH 120

Query: 121 KADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMA 180
           KA+TK+KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA
Sbjct: 121 KAETKKKAIPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMA 180

Query: 181 RVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALER 238
           RVVRDKRTGKTKGYGFVSF+NP DL  ALKEMNGKYVGNRPIKLRKS WK+R DYEAL R
Sbjct: 181 RVVRDKRTGKTKGYGFVSFSNPTDLAGALKEMNGKYVGNRPIKLRKSNWKERTDYEALGR 240

[Close]
BLAST of ClCG06G009560 vs. NCBI nr
Match: gi|359488053|ref|XP_002266454.2| (PREDICTED: RNA-binding protein 42-like isoform X1 [Vitis vinifera])

HSP 1 Score: 333.6 bits (854), Expect = 2.9e-88
Identity = 170/254 (66.93%), Postives = 191/254 (75.20%), Query Frame = 1 

Query: 10  SSISSSQFAYSAGPCFPVPFHLQQSAPVSA--------------------------AAAT 69
           S+ SSSQF YS    FP+PFHLQQS P++A                          A A 
Sbjct: 9   STSSSSQFTYSNASYFPLPFHLQQSDPMAAVSQYPKPYVAPPPPPVQVPVPPVKIPAVAP 68

Query: 70  TAPVSAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKADTK 129
             P  AP A +Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+EHKA+TK
Sbjct: 69  VYPAPAPVAGVYSLPQY-----QQAQQLFQRDAQTITPEALESVKAALASSEIEHKAETK 128

Query: 130 RKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVVRD 189
           +KAIPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VVRD
Sbjct: 129 KKAIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVVRD 188

Query: 190 KRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKNKT 238
           KRTGKT+GYGFVSF+NPLDL AALKEMNGKYVGNRPIKLRKS W++R D+EALER KN  
Sbjct: 189 KRTGKTRGYGFVSFSNPLDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEALERQKNHI 248

[Close]
BLAST of ClCG06G009560 vs. NCBI nr
Match: gi|568868953|ref|XP_006487710.1| (PREDICTED: RNA-binding protein 42 [Citrus sinensis])

HSP 1 Score: 333.2 bits (853), Expect = 3.8e-88
Identity = 170/256 (66.41%), Postives = 196/256 (76.56%), Query Frame = 1 

Query: 1   MAAPCFWAPSSISSSQFAYSAGPC---------FPVPFHLQQSAPVSAA-----AATTAP 60
           ++ P     SS SS QF Y+A P          FP+PFHLQQ+ P + +     AA  AP
Sbjct: 24  LSNPMSMPQSSSSSGQFTYAAAPAAPTTANSSYFPLPFHLQQTDPTAVSQYPPPAAYPAP 83

Query: 61  V-----SAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEMEHKAD 120
           V     +AP A +Y LPQYHQ     AQQLF +DAQ ITPEALE VK ALA  ++EHKA+
Sbjct: 84  VVPSVYAAPVAPVYSLPQYHQ-----AQQLFQRDAQTITPEALESVKAALASSDIEHKAE 143

Query: 121 TKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFNMARVV 180
           TK+K+IPRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFNMA+VV
Sbjct: 144 TKKKSIPRKAAGQTWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFNMAKVV 203

Query: 181 RDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEALERLKN 238
           RDKRTGKTKGYGF+SF NP D+ AALKEMNGKYVGNRPIKLRKSKW++R D+EALER KN
Sbjct: 204 RDKRTGKTKGYGFISFANPSDIAAALKEMNGKYVGNRPIKLRKSKWQERTDFEALERSKN 263

[Close]
BLAST of ClCG06G009560 vs. NCBI nr
Match: gi|1009117912|ref|XP_015875574.1| (PREDICTED: RNA-binding protein 42 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 332.8 bits (852), Expect = 4.9e-88
Identity = 176/261 (67.43%), Postives = 194/261 (74.33%), Query Frame = 1 

Query: 1   MAAPCFWAP--SSISSSQFAYSAGPC-FPVPFHLQQS-------APVSAAAATTAPV--- 60
           MA P    P  SS SSSQF YS G   FP+PFHLQQS       AP +AA  +  PV   
Sbjct: 1   MATPPSSGPPSSSASSSQFTYSNGSSYFPLPFHLQQSPAVSQYPAPYAAAPPSVQPVPIP 60

Query: 61  -----------SAPAAAIYPLPQYHQVGVEQAQQLFHKDAQIITPEALEGVKVALARDEM 120
                      SAP A +Y LPQY     +QAQQLF +DAQ ITPEALE VK ALA  E+
Sbjct: 61  APPVVAPIYPASAPVAGVYSLPQY-----QQAQQLFQRDAQTITPEALESVKAALANSEI 120

Query: 121 EHKADTKRKAIPRKAAGQKWEDPTLADWPENDYRLFCGDLGNEVNDDVLSRAFSRFPSFN 180
           EHKA+ K+KA+PRKAAGQ WEDPTLA+WPENDYRLFCGDLGNEVNDDVLS+AFSRFPSFN
Sbjct: 121 EHKAEAKKKAVPRKAAGQSWEDPTLAEWPENDYRLFCGDLGNEVNDDVLSKAFSRFPSFN 180

Query: 181 MARVVRDKRTGKTKGYGFVSFTNPLDLTAALKEMNGKYVGNRPIKLRKSKWKDRIDYEAL 238
           MARVVRDKRTGKTKGYGFVSF NP DL AALKEMNGKYVGNRPIKLRKS W++R D+EAL
Sbjct: 181 MARVVRDKRTGKTKGYGFVSFANPSDLAAALKEMNGKYVGNRPIKLRKSNWRERTDFEAL 240

The following BLAST results are available for this feature:
BLAST of ClCG06G009560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBM42_XENLA1.4e-4248.77RNA-binding protein 42 OS=Xenopus laevis GN=rbm42 PE=2 SV=1[more]
RBM42_BOVIN5.3e-4264.84RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1[more]
RBM42_MOUSE6.9e-4264.84RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1[more]
RBM42_HUMAN6.9e-4264.84RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1[more]
RBM42_RAT6.9e-4264.84RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1[more]
BLAST of ClCG06G009560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LH39_CUCSA6.2e-9068.73Uncharacterized protein OS=Cucumis sativus GN=Csa_2G075290 PE=4 SV=1[more]
F6H614_VITVI2.0e-8866.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0036g00630 PE=4 SV=... [more]
V4TR47_9ROSI4.5e-8868.42Uncharacterized protein OS=Citrus clementina GN=CICLE_v10021882mg PE=4 SV=1[more]
B9S7K8_RICCO9.9e-8870.71Rrm-containing protein, putative OS=Ricinus communis GN=RCOM_0609090 PE=4 SV=1[more]
A0A061F8S2_THECC2.2e-8770.25RNA-binding family protein OS=Theobroma cacao GN=TCM_026188 PE=4 SV=1[more]
BLAST of ClCG06G009560 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04500.12.3e-8363.49 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT3G14100.13.2e-1346.58 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT1G17370.11.2e-1243.84 oligouridylate binding protein 1B[more]
AT1G54080.24.7e-1245.45 oligouridylate-binding protein 1A[more]
AT3G19130.17.9e-1246.05 RNA-binding protein 47B[more]
BLAST of ClCG06G009560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449470234|ref|XP_004152823.1|8.9e-9068.73PREDICTED: RNA-binding protein 42 [Cucumis sativus][more]
gi|659082432|ref|XP_008441837.1|8.9e-9068.73PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 42 [Cucumis melo][more]
gi|359488053|ref|XP_002266454.2|2.9e-8866.93PREDICTED: RNA-binding protein 42-like isoform X1 [Vitis vinifera][more]
gi|568868953|ref|XP_006487710.1|3.8e-8866.41PREDICTED: RNA-binding protein 42 [Citrus sinensis][more]
gi|1009117912|ref|XP_015875574.1|4.9e-8867.43PREDICTED: RNA-binding protein 42 isoform X1 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G009560.1ClCG06G009560.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 131..201
score: 5.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 130..203
score: 5.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 129..207
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 115..209
score: 4.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 113..209
score: 5.78
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 116..210
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG06G009560Cla97C06G119170Watermelon (97103) v2wcgwmbB273
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG06G009560Melon (DHL92) v3.6.1medwcgB250
ClCG06G009560Cucumber (Chinese Long) v3cucwcgB086
ClCG06G009560Cucumber (Chinese Long) v3cucwcgB091
ClCG06G009560Cucumber (Gy14) v1cgywcgB507
ClCG06G009560Wild cucumber (PI 183967)cpiwcgB081
ClCG06G009560Wild cucumber (PI 183967)cpiwcgB087
ClCG06G009560Cucumber (Chinese Long) v2cuwcgB076
ClCG06G009560Cucumber (Chinese Long) v2cuwcgB085
ClCG06G009560Melon (DHL92) v3.5.1mewcgB259
ClCG06G009560Watermelon (97103) v1wcgwmB344
ClCG06G009560Bottle gourd (USVL1VR-Ls)lsiwcgB030
ClCG06G009560Bottle gourd (USVL1VR-Ls)lsiwcgB375
ClCG06G009560Cucumber (Gy14) v2cgybwcgB075
ClCG06G009560Cucumber (Gy14) v2cgybwcgB081