Cla97C06G113530 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G113530
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Hydrolase, hydrolyzing O-glycosyl compounds, putative
Location	Cla97Chr06 : 4432048 .. 4432549 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAAGGTAATTATATTAATTATTCTAGTAATAACTTGTGATCCCATACAACAAAAGAATCATCGTGAAGAAATTGTTACATACAAACCATAAATTACTAAACCAATTTGTAAGTTTAAAATAGAATTTAATTGTGTTGCATTTTTGCGGCATATAGATCCAAGTTCCAATGCATCGTCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGCCCAAGTTTCAAATGACAATACTGGAATTTTTTTGAGTAATTGTTCCACCTCAAGTCAATGGAGTCATGGTGATGATGGCACTCCAATCAAAAGGAGGACAAATGGTTTGTGTTTAAAGGCTAATGGCGAAGGTGTTGGAGCATCCCTCTCAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAACGTAATCTTCATTTGGCCACTGTCACTCAAGATGGGAAGAGTCTTTGCTTGTAGGTTGAAAGCTCCAATTCTTCAAAAATTGTGA

mRNA sequence

ATGTTGCAAGATCCAAGTTCCAATGCATCGTCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGCCCAAGTTTCAAATGACAATACTGGAATTTTTTTGAGTAATTGTTCCACCTCAAGTCAATGGAGTCATGGTGATGATGGCACTCCAATCAAAAGGAGGACAAATGGTTTGTGTTTAAAGGCTAATGGCGAAGGTGTTGGAGCATCCCTCTCAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAACGTAATCTTCATTTGGCCACTGTCACTCAAGATGGGAAGAGTCTTTGCTTGTAGGTTGAAAGCTCCAATTCTTCAAAAATTGTGA

Coding sequence (CDS)

ATGTTGCAAGATCCAAGTTCCAATGCATCGTCTTCTTATGTTATGTATCATCCACAAAGTGGTCAATGTGCCCAAGTTTCAAATGACAATACTGGAATTTTTTTGAGTAATTGTTCCACCTCAAGTCAATGGAGTCATGGTGATGATGGCACTCCAATCAAAAGGAGGACAAATGGTTTGTGTTTAAAGGCTAATGGCGAAGGTGTTGGAGCATCCCTCTCAAGTGATTGTTTGGGTCAACAAAGTGTTTGGAGAGCAATTTCTAACGTAATCTTCATTTGGCCACTGTCACTCAAGATGGGAAGAGTCTTTGCTTGTAGGTTGAAAGCTCCAATTCTTCAAAAATTGTGA

Protein sequence

MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGLCLKANGEGVGASLSSDCLGQQSVWRAISNVIFIWPLSLKMGRVFACRLKAPILQKL

Homology

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BLAST of Cla97C06G113530 vs. NCBI nr
Match: XP_022158418.1 (uncharacterized protein LOC111024912, partial [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 3.3e-33
Identity = 73/89 (82.02%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNASSSYVMYHPQSGQC   SNDN GIFLS+CSTSS+WSHG DGT IK  T GL
Sbjct: 101 MLQDPTSNASSSYVMYHPQSGQCILASNDNKGIFLSSCSTSSRWSHGGDGTSIKITTTGL 160

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKANGEG+  SLSSDCL QQSVWRAISN
Sbjct: 161 CLKANGEGLRVSLSSDCLSQQSVWRAISN 189

[Close]

BLAST of Cla97C06G113530 vs. NCBI nr
Match: XP_022157219.1 (uncharacterized protein LOC111023982 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 70/89 (78.65%), Postives = 75/89 (84.27%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNASSSYVMYHPQSGQC   SNDN  +FLSNC TSS+WSHG DGTPIK  T GL
Sbjct: 335 MLQDPNSNASSSYVMYHPQSGQCVLSSNDNREMFLSNCXTSSRWSHGGDGTPIKMTTTGL 394

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           C+KANGE +G SLSSDCLGQ S WRAISN
Sbjct: 395 CVKANGESLGXSLSSDCLGQLSAWRAISN 423

[Close]

BLAST of Cla97C06G113530 vs. NCBI nr
Match: XP_022958844.1 (uncharacterized protein LOC111459997 [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 69/89 (77.53%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNAS SY++YHPQSGQCAQ SN++T IFLS+CSTSS+WSHGD G  IK  T GL
Sbjct: 391 MLQDPNSNASFSYILYHPQSGQCAQTSNNDTQIFLSDCSTSSRWSHGDGGNSIKMATTGL 450

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKANGEG+G SLSSDCL QQSVWR ISN
Sbjct: 451 CLKANGEGLGVSLSSDCLSQQSVWRTISN 479

[Close]

BLAST of Cla97C06G113530 vs. NCBI nr
Match: XP_008445780.1 (PREDICTED: major extracellular endoglucanase-like [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 5.2e-31
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNAS SYV+YHPQSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIK    GL
Sbjct: 302 MLQDPNSNASFSYVIYHPQSGQCIEVSNDNKDIFLTNCSTSSRWSHDNDSTPIKMSNTGL 361

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKA+GEG+ ASLS+DCLG+QSVW AISN
Sbjct: 362 CLKASGEGLAASLSNDCLGKQSVWSAISN 390

[Close]

BLAST of Cla97C06G113530 vs. NCBI nr
Match: XP_011658389.1 (PREDICTED: uncharacterized protein LOC101207450 [Cucumis sativus] >KGN45940.1 hypothetical protein Csa_6G028440 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 8.4e-29
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP SNAS SYV+YH QSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIK  + GL
Sbjct: 391 MLQDPYSNASFSYVIYHVQSGQCIEVSNDNKEIFLTNCSTSSRWSHDNDSTPIKMSSTGL 450

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKA+GEG+ ASLS+DC+G+QS+W AISN
Sbjct: 451 CLKASGEGLEASLSTDCIGKQSLWSAISN 479

[Close]

BLAST of Cla97C06G113530 vs. TrEMBL
Match: tr|A0A1S3BDI2|A0A1S3BDI2_CUCME (major extracellular endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103488703 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.5e-31
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNAS SYV+YHPQSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIK    GL
Sbjct: 302 MLQDPNSNASFSYVIYHPQSGQCIEVSNDNKDIFLTNCSTSSRWSHDNDSTPIKMSNTGL 361

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKA+GEG+ ASLS+DCLG+QSVW AISN
Sbjct: 362 CLKASGEGLAASLSNDCLGKQSVWSAISN 390

[Close]

BLAST of Cla97C06G113530 vs. TrEMBL
Match: tr|A0A0A0K853|A0A0A0K853_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G028440 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.5e-29
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP SNAS SYV+YH QSGQC +VSNDN  IFL+NCSTSS+WSH +D TPIK  + GL
Sbjct: 391 MLQDPYSNASFSYVIYHVQSGQCIEVSNDNKEIFLTNCSTSSRWSHDNDSTPIKMSSTGL 450

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
           CLKA+GEG+ ASLS+DC+G+QS+W AISN
Sbjct: 451 CLKASGEGLEASLSTDCIGKQSLWSAISN 479

[Close]

BLAST of Cla97C06G113530 vs. TrEMBL
Match: tr|A0A0A0L644|A0A0A0L644_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186670 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.0e-27
Identity = 63/89 (70.79%), Postives = 74/89 (83.15%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSNDNTGIFLSNCSTSSQWSHGDDGTPIKRRTNGL 60
           MLQDP+SNAS SYV+YHPQS QC QVSNDN  IFL+NCST ++WSH +DGTPI+  + GL
Sbjct: 202 MLQDPNSNASFSYVIYHPQSSQCIQVSNDNKEIFLTNCSTPTRWSHNNDGTPIEMSSTGL 261

Query: 61  CLKANGEGVGASLSSDCLGQQSVWRAISN 90
            LKA+G+G+ ASLSSD L QQSVW AISN
Sbjct: 262 YLKASGKGLEASLSSDTLSQQSVWSAISN 290

[Close]

BLAST of Cla97C06G113530 vs. TrEMBL
Match: tr|A0A1S3CTF8|A0A1S3CTF8_CUCME (major extracellular endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103504686 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22
Identity = 54/90 (60.00%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSN-DNTGIFLSNCSTSSQWSHGDDGTPIKRRTNG 60
           MLQDP+SN+S++Y+MYHPQSGQC QV +     IFL+NCS +S WS+  DGTPI   +  
Sbjct: 391 MLQDPNSNSSNTYLMYHPQSGQCVQVHDMKQKEIFLNNCSNASHWSYEGDGTPIMLASTN 450

Query: 61  LCLKANGEGVGASLSSDCLGQQSVWRAISN 90
            CLKANG G+  SLS DC G+QSVW AIS+
Sbjct: 451 FCLKANGNGLPPSLSRDCFGEQSVWTAISD 480

[Close]

BLAST of Cla97C06G113530 vs. TrEMBL
Match: tr|A0A0A0KKZ0|A0A0A0KKZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168960 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20
Identity = 51/90 (56.67%), Postives = 68/90 (75.56%), Query Frame = 0


Query: 1   MLQDPSSNASSSYVMYHPQSGQCAQVSN-DNTGIFLSNCSTSSQWSHGDDGTPIKRRTNG 60
           MLQDP+SN+S++YVMYHPQSGQC  V +  +  I+L++CS +S WS+  DGTPI   +  
Sbjct: 195 MLQDPNSNSSNTYVMYHPQSGQCVLVQDMKHMQIYLNDCSNASHWSYEGDGTPIMLASTN 254

Query: 61  LCLKANGEGVGASLSSDCLGQQSVWRAISN 90
            CLKA+G+G+  SLS DC G+QSVW AIS+
Sbjct: 255 FCLKASGDGLPPSLSRDCFGEQSVWTAISD 284

The following BLAST results are available for this feature:

BLAST of Cla97C06G113530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158418.1	3.3e-33	82.02	uncharacterized protein LOC111024912, partial [Momordica charantia]	[more]
XP_022157219.1	3.6e-32	78.65	uncharacterized protein LOC111023982 [Momordica charantia]	[more]
XP_022958844.1	3.6e-32	77.53	uncharacterized protein LOC111459997 [Cucurbita moschata]	[more]
XP_008445780.1	5.2e-31	75.28	PREDICTED: major extracellular endoglucanase-like [Cucumis melo]	[more]
XP_011658389.1	8.4e-29	71.91	PREDICTED: uncharacterized protein LOC101207450 [Cucumis sativus] >KGN45940.1 hy...	[more]

BLAST of Cla97C06G113530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BDI2\|A0A1S3BDI2_CUCME	3.5e-31	75.28	major extracellular endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103488703 P...	[more]
tr\|A0A0A0K853\|A0A0A0K853_CUCSA	5.5e-29	71.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G028440 PE=3 SV=1	[more]
tr\|A0A0A0L644\|A0A0A0L644_CUCSA	3.0e-27	70.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G186670 PE=4 SV=1	[more]
tr\|A0A1S3CTF8\|A0A1S3CTF8_CUCME	5.0e-22	60.00	major extracellular endoglucanase-like OS=Cucumis melo OX=3656 GN=LOC103504686 P...	[more]
tr\|A0A0A0KKZ0\|A0A0A0KKZ0_CUCSA	1.6e-20	56.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G168960 PE=3 SV=1	[more]

BLAST of Cla97C06G113530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G113530 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR035992	Ricin_B-like_lectins

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016798	hydrolase activity, acting on glycosyl bonds
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G113530.1	Cla97C06G113530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.80.10.50		coord: 4..90 e-value: 1.5E-6 score: 30.1
None	No IPR available	PANTHER	PTHR31263	FAMILY NOT NAMED	coord: 1..89
None	No IPR available	PANTHER	PTHR31263:SF10	SUBFAMILY NOT NAMED	coord: 1..89
IPR035992	Ricin B-like lectins	SUPERFAMILY	SSF50370	Ricin B-like lectins	coord: 10..73

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G113530	Silver-seed gourd	carwmbB0070
Cla97C06G113530	Cucumber (Gy14) v2	cgybwmbB451
Cla97C06G113530	Cucumber (Gy14) v1	cgywmbB227
Cla97C06G113530	Cucurbita maxima (Rimu)	cmawmbB377
Cla97C06G113530	Cucurbita moschata (Rifu)	cmowmbB361
Cla97C06G113530	Wild cucumber (PI 183967)	cpiwmbB499
Cla97C06G113530	Cucumber (Chinese Long) v3	cucwmbB492
Cla97C06G113530	Cucumber (Chinese Long) v2	cuwmbB472
Cla97C06G113530	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G113530	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G113530	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G113530	Watermelon (97103) v1	wmwmbB406