Cla97C06G111610 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G111610
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	LHY/CCA1-like 1
Location	Cla97Chr06 : 2400320 .. 2401172 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCCAACTCCTCAGGAGAAGACTTGGTTTTTAAGGTGATAATCCATTCCCTTTCCTCACAAAAAGGGAAAAAAAGTTTAAATCAGAAGAAGTGAAGAAAAGAAAATTGAGAACTGTTTATAACTGAGGTCTGAATATGATAGACTAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGGTTGTATTTTGATCAATTGTCAGCATTCCTTTTTGGCTTTTGTTCATTCCGTAGCTTGTAACCTTGGTTGGATGAATTATATACTCTGCGGTCAATGATGCCAAATTTAATGACCATGCAGGTTATTAATAAGAATTTTCTTTAATTAAAAATGTTACGATCTGTGATATTTTTGATCAAGGGACAACTTTTCATTAATGAGATGAAAAGAGATTATTGTTCAATAGATATAAACTCCAAAAAGAGTGAAAAGAAAAAGTAAAGAGAAAAACAAATAAAACCGCTGTCCCAAACCAAAATGATAAACTTAAAAACATAATAAAGAACTAATACGTCAAACTGAATCAAGAGAATTAACGTTGAGCTGCCCATAGAAGGTGGAGTAGACTTCCGAAAGCTCCATCATATATTGGCGAAGAATCTCAGTCTTATTGTTGAGCTAATTTGATCTGGATCCTTTAACGACTGCTATCAAGTTTATATTGTCCTTTAAAAAGGTACCTGATTCTTCATTGTGTGTCTTTATATGCAGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAG

mRNA sequence

ATGGATCCCAACTCCTCAGGAGAAGACTTGGTTTTTAAGACTAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAG

Coding sequence (CDS)

ATGGATCCCAACTCCTCAGGAGAAGACTTGGTTTTTAAGACTAGGAAGCCATATACTATTACAAAGCAACGAGAGCGCTGGACGGAGGAGGAGCACAATAGATTTCTAGAGGCGCTGAAGCTCTATGGGCGAGCATGGCAGAGAATTGAAGAACATATTGGAACCAAAACTGCAGTCCAGATACGAAGTCATGCGCAAAAGTTCTTTTCAAAG

Protein sequence

MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSK

Homology

[Close]

BLAST of Cla97C06G111610 vs. NCBI nr
Match: XP_004140527.1 (PREDICTED: protein LHY-like isoform X2 [Cucumis sativus] >KGN46475.1 hypothetical protein Csa_6G095910 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. NCBI nr
Match: XP_008459822.1 (PREDICTED: protein LHY-like isoform X1 [Cucumis melo] >XP_008459823.1 PREDICTED: protein LHY-like isoform X1 [Cucumis melo] >XP_008459824.1 PREDICTED: protein LHY-like isoform X1 [Cucumis melo] >XP_008459826.1 PREDICTED: protein LHY-like isoform X1 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. NCBI nr
Match: XP_008459828.1 (PREDICTED: protein LHY-like isoform X2 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. NCBI nr
Match: XP_011656823.1 (PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656824.1 PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656825.1 PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656826.1 PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656827.1 PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656828.1 PREDICTED: protein LHY-like isoform X1 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. NCBI nr
Match: XP_022156983.1 (protein LHY [Momordica charantia])

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. TrEMBL
Match: tr|A0A1S3CB62|A0A1S3CB62_CUCME (protein LHY-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498835 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. TrEMBL
Match: tr|A0A1S3CCB0|A0A1S3CCB0_CUCME (protein LHY-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498835 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. TrEMBL
Match: tr|A0A0A0K9R4|A0A0A0K9R4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095910 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.6e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. TrEMBL
Match: tr|A0A2G9H753|A0A2G9H753_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_14046 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-31
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MDP SSGEDLV KTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDPYSSGEDLVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFF+K
Sbjct: 61 IRSHAQKFFTK 71

[Close]

BLAST of Cla97C06G111610 vs. TrEMBL
Match: tr|A0A2R6Q1B8|A0A2R6Q1B8_ACTCH (Protein LHY like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24169 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-30
Identity = 67/71 (94.37%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MD NSSGEDLV KTRKPYTITKQRERWTEEEHNRFL+ALKLYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDNNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFLDALKLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFF+K
Sbjct: 61 IRSHAQKFFTK 71

[Close]

BLAST of Cla97C06G111610 vs. Swiss-Prot
Match: sp|P92973|CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana OX=3702 GN=CCA1 PE=1 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-31
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          M+ NSSGEDLV KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IEEH+ TKTAVQ
Sbjct: 1  METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. Swiss-Prot
Match: sp|Q6R0H1|LHY_ARATH (Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 7.0e-30
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFF+K
Sbjct: 61 IRSHAQKFFTK 71

[Close]

BLAST of Cla97C06G111610 vs. Swiss-Prot
Match: sp|F4KGY6|RVE1_ARATH (Protein REVEILLE 1 OS=Arabidopsis thaliana OX=3702 GN=RVE1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-25
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 2   DPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQI 61
           D +  G D   K RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIEEH+G+KTAVQI
Sbjct: 33  DQSFGGNDYAPKVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQI 92

Query: 62  RSHAQKFFSK 72
           RSHAQKFFSK
Sbjct: 93  RSHAQKFFSK 102

[Close]

BLAST of Cla97C06G111610 vs. Swiss-Prot
Match: sp|F4K5X6|RVE2_ARATH (Protein REVEILLE 2 OS=Arabidopsis thaliana OX=3702 GN=RVE2 PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-25
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 5  SSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSH 64
          SS +    KTRKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIEEH+GTKTAVQIRSH
Sbjct: 17 SSSDAFYLKTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSH 76

Query: 65 AQKFFSK 72
          AQKFF+K
Sbjct: 77 AQKFFTK 83

[Close]

BLAST of Cla97C06G111610 vs. Swiss-Prot
Match: sp|F4J2J6|RVE7L_ARATH (Protein REVEILLE 7-like OS=Arabidopsis thaliana OX=3702 GN=RVE7L PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.4e-24
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 11  VFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFS 70
           V K RKPYT+TKQRE+W+EEEH+RFLEA+KLYGR W++I+EHIGTKTAVQIRSHAQKFFS
Sbjct: 52  VVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFFS 111

Query: 71  K 72
           K
Sbjct: 112 K 112

[Close]

BLAST of Cla97C06G111610 vs. TAIR10
Match: AT2G46830.1 (circadian clock associated 1)

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-32
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          M+ NSSGEDLV KTRKPYTITKQRERWTEEEHNRF+EAL+LYGRAWQ+IEEH+ TKTAVQ
Sbjct: 1  METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFFSK
Sbjct: 61 IRSHAQKFFSK 71

[Close]

BLAST of Cla97C06G111610 vs. TAIR10
Match: AT1G01060.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 130.6 bits (327), Expect = 3.9e-31
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = 0


Query: 1  MDPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQ 60
          MD N+SGE+L+ K RKPYTITKQRERWTE+EH RFLEAL+LYGRAWQRIEEHIGTKTAVQ
Sbjct: 1  MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQ 60

Query: 61 IRSHAQKFFSK 72
          IRSHAQKFF+K
Sbjct: 61 IRSHAQKFFTK 71

[Close]

BLAST of Cla97C06G111610 vs. TAIR10
Match: AT5G17300.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.0e-26
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 2   DPNSSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQI 61
           D +  G D   K RKPYTITK+RERWT+EEH +F+EALKLYGRAW+RIEEH+G+KTAVQI
Sbjct: 33  DQSFGGNDYAPKVRKPYTITKERERWTDEEHKKFVEALKLYGRAWRRIEEHVGSKTAVQI 92

Query: 62  RSHAQKFFSK 72
           RSHAQKFFSK
Sbjct: 93  RSHAQKFFSK 102

[Close]

BLAST of Cla97C06G111610 vs. TAIR10
Match: AT5G37260.1 (Homeodomain-like superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-26
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 5  SSGEDLVFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSH 64
          SS +    KTRKPYTITKQRE+WTE EH +F+EALKLYGRAW+RIEEH+GTKTAVQIRSH
Sbjct: 17 SSSDAFYLKTRKPYTITKQREKWTEAEHEKFVEALKLYGRAWRRIEEHVGTKTAVQIRSH 76

Query: 65 AQKFFSK 72
          AQKFF+K
Sbjct: 77 AQKFFTK 83

[Close]

BLAST of Cla97C06G111610 vs. TAIR10
Match: AT1G18330.2 (Homeodomain-like superfamily protein)

HSP 1 Score: 111.3 bits (277), Expect = 2.5e-25
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = 0


Query: 11  VFKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFS 70
           V K RKPYT+TKQRE+W+EEEH+RFLEA+KLYGR W++I+EHIGTKTAVQIRSHAQKFFS
Sbjct: 63  VVKVRKPYTVTKQREKWSEEEHDRFLEAIKLYGRGWRQIQEHIGTKTAVQIRSHAQKFFS 122

Query: 71  K 72
           K
Sbjct: 123 K 123

The following BLAST results are available for this feature:

BLAST of Cla97C06G111610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140527.1	1.0e-32	100.00	PREDICTED: protein LHY-like isoform X2 [Cucumis sativus] >KGN46475.1 hypothetica...	[more]
XP_008459822.1	1.0e-32	100.00	PREDICTED: protein LHY-like isoform X1 [Cucumis melo] >XP_008459823.1 PREDICTED:...	[more]
XP_008459828.1	1.0e-32	100.00	PREDICTED: protein LHY-like isoform X2 [Cucumis melo]	[more]
XP_011656823.1	1.0e-32	100.00	PREDICTED: protein LHY-like isoform X1 [Cucumis sativus] >XP_011656824.1 PREDICT...	[more]
XP_022156983.1	1.0e-32	100.00	protein LHY [Momordica charantia]	[more]

BLAST of Cla97C06G111610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CB62\|A0A1S3CB62_CUCME	6.6e-33	100.00	protein LHY-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498835 PE=4 SV=1	[more]
tr\|A0A1S3CCB0\|A0A1S3CCB0_CUCME	6.6e-33	100.00	protein LHY-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498835 PE=4 SV=1	[more]
tr\|A0A0A0K9R4\|A0A0A0K9R4_CUCSA	6.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095910 PE=4 SV=1	[more]
tr\|A0A2G9H753\|A0A2G9H753_9LAMI	6.2e-31	95.77	Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_14046 P...	[more]
tr\|A0A2R6Q1B8\|A0A2R6Q1B8_ACTCH	1.8e-30	94.37	Protein LHY like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc24...	[more]

BLAST of Cla97C06G111610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P92973\|CCA1_ARATH	2.2e-31	88.73	Protein CCA1 OS=Arabidopsis thaliana OX=3702 GN=CCA1 PE=1 SV=1	[more]
sp\|Q6R0H1\|LHY_ARATH	7.0e-30	85.92	Protein LHY OS=Arabidopsis thaliana OX=3702 GN=LHY PE=1 SV=2	[more]
sp\|F4KGY6\|RVE1_ARATH	1.8e-25	75.71	Protein REVEILLE 1 OS=Arabidopsis thaliana OX=3702 GN=RVE1 PE=2 SV=1	[more]
sp\|F4K5X6\|RVE2_ARATH	2.3e-25	79.10	Protein REVEILLE 2 OS=Arabidopsis thaliana OX=3702 GN=RVE2 PE=1 SV=1	[more]
sp\|F4J2J6\|RVE7L_ARATH	4.4e-24	81.97	Protein REVEILLE 7-like OS=Arabidopsis thaliana OX=3702 GN=RVE7L PE=3 SV=1	[more]

BLAST of Cla97C06G111610 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46830.1	1.2e-32	88.73	circadian clock associated 1	[more]
AT1G01060.1	3.9e-31	85.92	Homeodomain-like superfamily protein	[more]
AT5G17300.1	1.0e-26	75.71	Homeodomain-like superfamily protein	[more]
AT5G37260.1	1.3e-26	79.10	Homeodomain-like superfamily protein	[more]
AT1G18330.2	2.5e-25	81.97	Homeodomain-like superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR006447	Myb_dom_plants
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003682	chromatin binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C06G111610.1	Cla97C06G111610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 23..71 e-value: 7.3E-13 score: 58.7
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 24..67 e-value: 5.0E-15 score: 55.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 26..69 e-value: 7.68607E-9 score: 45.6442
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 22..71 e-value: 1.7E-18 score: 64.7
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 26..71 e-value: 2.3E-18 score: 67.9
None	No IPR available	PANTHER	PTHR12802	SWI/SNF COMPLEX-RELATED	coord: 1..71
None	No IPR available	PANTHER	PTHR12802:SF43	PROTEIN CCA1	coord: 1..71
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 19..71 score: 21.38
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 18..70

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C06G111610	Csa6G095910	Cucumber (Chinese Long) v2	cuwmbB468
Cla97C06G111610	MELO3C022302	Melon (DHL92) v3.5.1	mewmbB127
Cla97C06G111610	ClCG06G002310	Watermelon (Charleston Gray)	wcgwmbB273
Cla97C06G111610	CSPI06G07970	Wild cucumber (PI 183967)	cpiwmbB495
Cla97C06G111610	Cucsa.349800	Cucumber (Gy14) v1	cgywmbB596
Cla97C06G111610	CmaCh17G005520	Cucurbita maxima (Rimu)	cmawmbB371
Cla97C06G111610	CmaCh08G001630	Cucurbita maxima (Rimu)	cmawmbB924
Cla97C06G111610	CmoCh17G005320	Cucurbita moschata (Rifu)	cmowmbB357
Cla97C06G111610	CmoCh08G001640	Cucurbita moschata (Rifu)	cmowmbB899
Cla97C06G111610	Lsi09G017120	Bottle gourd (USVL1VR-Ls)	lsiwmbB026
Cla97C06G111610	CsGy6G008030	Cucumber (Gy14) v2	cgybwmbB446
Cla97C06G111610	MELO3C022302.2	Melon (DHL92) v3.6.1	medwmbB118
Cla97C06G111610	Carg04991	Silver-seed gourd	carwmbB0078
Cla97C06G111610	Carg26114	Silver-seed gourd	carwmbB1018
Cla97C06G111610	CsaV3_6G008360	Cucumber (Chinese Long) v3	cucwmbB487
Cla97C06G111610	Bhi12G002045	Wax gourd	wgowmbB094

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C06G111610	Watermelon (Charleston Gray)	wcgwmbB241
Cla97C06G111610	Watermelon (97103) v1	wmwmbB408