Cla97C06G110510 (gene) Watermelon (97103) v2

Overview
NameCla97C06G110510
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationCla97Chr06 : 1164407 .. 1165891 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAATCAATATCCCCATCTCCATTACCTGATGCAATTTTGCCCCCTTCTCCTCAAACCCCTCTGCCCCCTCTTCTCAATTTCTCCCTCTCTTCCCCCCATCATTACACTCAACTCCTCCATTTCCTCAAAACCCACCTCACGCTTCCCTTCACGCCTAATAATCTCCTCCATTTCCTCAAATCCAAGCTTCATTTTCACCCCAAATTCACTCACTACGATTTCCATATCTTCAATTGGGCTTCAACCATCGATTCCTTCCGCCACGATCACTCTACCTTTGCATGGATGGCCAGGACCCTTGCAACCACAGATCGTTTCACTGAGCTCAAATCCCTTCTAAAGTTCTTGGCCTCCTCTCCTTGCCCCTGCTCTGATGGTATTTTCTCTTGCCCTCAGACAGAATCCATTTTTCAATTTTCCATTAGTGCCTATTGTAGAGCTAGGAAATTTGATGAGGCTGTTTTTGCTTTTGACACCATGAGAAAAATGATTGATGGGAGGCCAAGTGTCGTCGTCTATAATGTTTTGATTAATGGGTTTGTGAAGTCTGGTAGATTTGACAAGGCTTTCGGCTTTTATGATAGGATGCTTAGTGATCGGGTTAAGCCTGATGTGTACACTTTTAACATTTTGATTAGCGGGTATTGTCGCAATTCACAGTTTGCACTGGCTTTAGAGTTATTTAAGGAGATGAGGGAAAAGGGTTGTAGCCCAAATGTGATCAGTTTCAATACACTGATTAAAGGGTTCTTCAGGGAAGGAAAGTTTGAGGATGGGATTGCTCTGGCTTATGAGATGATTGAACTGGGATGCAAGTTCTCTAGTGTCACCTGTGAAATTGTAATGGATGGGCTCAGTAGAGAAGGCAAGGTTTGTGAGGCATGTGAAATTTTGATTGATTTTTCGAGGAAGCAAGTATTGCCCAAGGATTATGATTACTTTGGAGTTATTGAAATGCTTTGTGGGAAAGGGAATGCAGGCAAAGCTATGGAAGTTGTGTACGAGCTATGGATGGAAGGAAATGTTCCCAGCTTCATTACTTCCACCACTTTGATAGATGGACTGAGGAAAGAAGGGAGATTGAATGATGCAATGAATGTAACAGAGAGGATGCTTAAAGTAGGTACGGTTCCTGACAGTGTGACTTTGAACTCTCTTCTCCAAGATCTATGCAATGTGAGGAAAACTGTGGAAGCTAATAAGTTGAGATTATTGGCTTCAAGCAAGGGGTTTGAACCAGACAACAAAACATATTACACTTTAGTTTCTGGTTACACCATGGAAGGCAACAAGGTGGAAGGGCAAAGGCTTGTGGAGGAGATGTTGGATAAGGAGTTTCTACCTGATATTGCAACATATAATAGGATAATGGATCGGTTGTCGAATACATGTAAGAAAAGATCATACTGTCACATCCATTCGAGTTCAAAGTTGGTAACATAA

mRNA sequence

ATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAATCAATATCCCCATCTCCATTACCTGATGCAATTTTGCCCCCTTCTCCTCAAACCCCTCTGCCCCCTCTTCTCAATTTCTCCCTCTCTTCCCCCCATCATTACACTCAACTCCTCCATTTCCTCAAAACCCACCTCACGCTTCCCTTCACGCCTAATAATCTCCTCCATTTCCTCAAATCCAAGCTTCATTTTCACCCCAAATTCACTCACTACGATTTCCATATCTTCAATTGGGCTTCAACCATCGATTCCTTCCGCCACGATCACTCTACCTTTGCATGGATGGCCAGGACCCTTGCAACCACAGATCGTTTCACTGAGCTCAAATCCCTTCTAAAGTTCTTGGCCTCCTCTCCTTGCCCCTGCTCTGATGGTATTTTCTCTTGCCCTCAGACAGAATCCATTTTTCAATTTTCCATTAGTGCCTATTGTAGAGCTAGGAAATTTGATGAGGCTGTTTTTGCTTTTGACACCATGAGAAAAATGATTGATGGGAGGCCAAGTGTCGTCGTCTATAATGTTTTGATTAATGGGTTTGTGAAGTCTGGTAGATTTGACAAGGCTTTCGGCTTTTATGATAGGATGCTTAGTGATCGGGTTAAGCCTGATGTGTACACTTTTAACATTTTGATTAGCGGGTATTGTCGCAATTCACAGTTTGCACTGGCTTTAGAGTTATTTAAGGAGATGAGGGAAAAGGGTTGTAGCCCAAATGTGATCAGTTTCAATACACTGATTAAAGGGTTCTTCAGGGAAGGAAAGTTTGAGGATGGGATTGCTCTGGCTTATGAGATGATTGAACTGGGATGCAAGTTCTCTAGTGTCACCTGTGAAATTGTAATGGATGGGCTCAGTAGAGAAGGCAAGGTTTGTGAGGCATGTGAAATTTTGATTGATTTTTCGAGGAAGCAAGTATTGCCCAAGGATTATGATTACTTTGGAGTTATTGAAATGCTTTGTGGGAAAGGGAATGCAGGCAAAGCTATGGAAGTTGTGTACGAGCTATGGATGGAAGGAAATGTTCCCAGCTTCATTACTTCCACCACTTTGATAGATGGACTGAGGAAAGAAGGGAGATTGAATGATGCAATGAATGTAACAGAGAGGATGCTTAAAGTAGGTACGGTTCCTGACAGTGTGACTTTGAACTCTCTTCTCCAAGATCTATGCAATGTGAGGAAAACTGTGGAAGCTAATAAGTTGAGATTATTGGCTTCAAGCAAGGGGTTTGAACCAGACAACAAAACATATTACACTTTAGTTTCTGGTTACACCATGGAAGGCAACAAGGTGGAAGGGCAAAGGCTTGTGGAGGAGATGTTGGATAAGGAGTTTCTACCTGATATTGCAACATATAATAGGATAATGGATCGGTTGTCGAATACATGTAAGAAAAGATCATACTGTCACATCCATTCGAGTTCAAAGTTGGTAACATAA

Coding sequence (CDS)

ATGAAGAAGCTCCCACCTATCCTGAGAAAGCTTCAAACCCCTCAATCAATATCCCCATCTCCATTACCTGATGCAATTTTGCCCCCTTCTCCTCAAACCCCTCTGCCCCCTCTTCTCAATTTCTCCCTCTCTTCCCCCCATCATTACACTCAACTCCTCCATTTCCTCAAAACCCACCTCACGCTTCCCTTCACGCCTAATAATCTCCTCCATTTCCTCAAATCCAAGCTTCATTTTCACCCCAAATTCACTCACTACGATTTCCATATCTTCAATTGGGCTTCAACCATCGATTCCTTCCGCCACGATCACTCTACCTTTGCATGGATGGCCAGGACCCTTGCAACCACAGATCGTTTCACTGAGCTCAAATCCCTTCTAAAGTTCTTGGCCTCCTCTCCTTGCCCCTGCTCTGATGGTATTTTCTCTTGCCCTCAGACAGAATCCATTTTTCAATTTTCCATTAGTGCCTATTGTAGAGCTAGGAAATTTGATGAGGCTGTTTTTGCTTTTGACACCATGAGAAAAATGATTGATGGGAGGCCAAGTGTCGTCGTCTATAATGTTTTGATTAATGGGTTTGTGAAGTCTGGTAGATTTGACAAGGCTTTCGGCTTTTATGATAGGATGCTTAGTGATCGGGTTAAGCCTGATGTGTACACTTTTAACATTTTGATTAGCGGGTATTGTCGCAATTCACAGTTTGCACTGGCTTTAGAGTTATTTAAGGAGATGAGGGAAAAGGGTTGTAGCCCAAATGTGATCAGTTTCAATACACTGATTAAAGGGTTCTTCAGGGAAGGAAAGTTTGAGGATGGGATTGCTCTGGCTTATGAGATGATTGAACTGGGATGCAAGTTCTCTAGTGTCACCTGTGAAATTGTAATGGATGGGCTCAGTAGAGAAGGCAAGGTTTGTGAGGCATGTGAAATTTTGATTGATTTTTCGAGGAAGCAAGTATTGCCCAAGGATTATGATTACTTTGGAGTTATTGAAATGCTTTGTGGGAAAGGGAATGCAGGCAAAGCTATGGAAGTTGTGTACGAGCTATGGATGGAAGGAAATGTTCCCAGCTTCATTACTTCCACCACTTTGATAGATGGACTGAGGAAAGAAGGGAGATTGAATGATGCAATGAATGTAACAGAGAGGATGCTTAAAGTAGGTACGGTTCCTGACAGTGTGACTTTGAACTCTCTTCTCCAAGATCTATGCAATGTGAGGAAAACTGTGGAAGCTAATAAGTTGAGATTATTGGCTTCAAGCAAGGGGTTTGAACCAGACAACAAAACATATTACACTTTAGTTTCTGGTTACACCATGGAAGGCAACAAGGTGGAAGGGCAAAGGCTTGTGGAGGAGATGTTGGATAAGGAGTTTCTACCTGATATTGCAACATATAATAGGATAATGGATCGGTTGTCGAATACATGTAAGAAAAGATCATACTGTCACATCCATTCGAGTTCAAAGTTGGTAACATAA

Protein sequence

MKKLPPILRKLQTPQSISPSPLPDAILPPSPQTPLPPLLNFSLSSPHHYTQLLHFLKTHLTLPFTPNNLLHFLKSKLHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRVKPDVYTFNILISGYCRNSQFALALELFKEMREKGCSPNVISFNTLIKGFFREGKFEDGIALAYEMIELGCKFSSVTCEIVMDGLSREGKVCEACEILIDFSRKQVLPKDYDYFGVIEMLCGKGNAGKAMEVVYELWMEGNVPSFITSTTLIDGLRKEGRLNDAMNVTERMLKVGTVPDSVTLNSLLQDLCNVRKTVEANKLRLLASSKGFEPDNKTYYTLVSGYTMEGNKVEGQRLVEEMLDKEFLPDIATYNRIMDRLSNTCKKRSYCHIHSSSKLVT
Homology
[Close]
BLAST of Cla97C06G110510 vs. NCBI nr
Match: XP_004140672.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus] >XP_011656750.1 PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 2.1e-76
Identity = 172/215 (80.00%), Postives = 178/215 (82.79%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTPQ   PSPLP+AILPP                            XXX
Sbjct: 1   MKKLPPILRKLQTPQPTPPSPLPNAILPPSPQTPVAPLLNLSFSSPHHYNQLLHFLKXXX 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
           XXXXXXXXXXXXXXXXX  HPKFTHYDFH+FNWASTIDSFRHDHSTFAWMARTLATTDRF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXHPKFTHYDFHVFNWASTIDSFRHDHSTFAWMARTLATTDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
            EL SLL+FLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFD+MRK+IDG
Sbjct: 121 FELTSLLRFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDSMRKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           RPSVVVYN+LINGFVKSGRFDKA GFY RMLSDRV
Sbjct: 181 RPSVVVYNILINGFVKSGRFDKALGFYSRMLSDRV 215

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BLAST of Cla97C06G110510 vs. NCBI nr
Match: XP_008459992.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis melo] >XP_008459993.1 PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 1.7e-75
Identity = 170/215 (79.07%), Postives = 178/215 (82.79%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTPQ  SPSPLP+AILP                             XXX
Sbjct: 1   MKKLPPILRKLQTPQPTSPSPLPNAILPLSPQTPPAPLLNLSLSSPHHYNQLLHFLKXXX 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
           XXXXXXXXXXXXXXXXX  HPKFTHYDFH+FNWASTIDSFRHDHSTFAWMARTLATTDRF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXHPKFTHYDFHVFNWASTIDSFRHDHSTFAWMARTLATTDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
           TEL SLL+FLASSPCPCSDGIFSCPQTES+FQ SISAYCRARKFDEAVFAFD+MRK+IDG
Sbjct: 121 TELTSLLRFLASSPCPCSDGIFSCPQTESVFQLSISAYCRARKFDEAVFAFDSMRKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           RPSVVVYN+LINGFVKSGRFDKA GFY RM+SDRV
Sbjct: 181 RPSVVVYNILINGFVKSGRFDKALGFYGRMISDRV 215

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BLAST of Cla97C06G110510 vs. NCBI nr
Match: XP_022977415.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucurbita maxima])

HSP 1 Score: 288.9 bits (738), Expect = 3.3e-74
Identity = 164/215 (76.28%), Postives = 176/215 (81.86%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTP+S  P PLPDAIL  XXXXXXXXXX                     
Sbjct: 1   MKKLPPILRKLQTPKSSPPPPLPDAILXXXXXXXXXXXXSFALSAPHHYAQLLHFLKTHL 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
                  XXXXXXXX  HFHPKFTHYDFHIFNWAS+IDSFRHDHSTFAWMARTLA TDRF
Sbjct: 61  TLPFTPNXXXXXXXXKLHFHPKFTHYDFHIFNWASSIDSFRHDHSTFAWMARTLAATDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
            ELKSLL+FLASSPCPCSDGIFSCPQTESIFQF+I+AYCRA KFDEAVFAFD+M+K+IDG
Sbjct: 121 AELKSLLQFLASSPCPCSDGIFSCPQTESIFQFAITAYCRAAKFDEAVFAFDSMKKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           +PSVV+YN+LINGFVKSGRF+KA GFYDRMLSDRV
Sbjct: 181 KPSVVIYNILINGFVKSGRFNKALGFYDRMLSDRV 215

[Close]
BLAST of Cla97C06G110510 vs. NCBI nr
Match: XP_023543149.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 9.6e-74
Identity = 165/215 (76.74%), Postives = 177/215 (82.33%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTP+   P PLPDAIL  XXXXXXXXXXXXX                  
Sbjct: 1   MKKLPPILRKLQTPKPAPPPPLPDAILXXXXXXXXXXXXXXXLSAPHHYAQLLHFLKTHL 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
                   XXXXXXX  HFHPKFTHYDFHIFNWAS+IDSFRHDHSTFAWMARTLA TDRF
Sbjct: 61  TLPFTPNNXXXXXXXKLHFHPKFTHYDFHIFNWASSIDSFRHDHSTFAWMARTLAATDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
            ELKSLL+FLASSPCPCSDGIFSCPQTESIFQF+I+AYCRA KFDEAVFAFD+M+K+IDG
Sbjct: 121 AELKSLLQFLASSPCPCSDGIFSCPQTESIFQFAITAYCRAAKFDEAVFAFDSMKKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           +PSVV+YN+LINGFVKSGRF+KA GFYDRMLSDRV
Sbjct: 181 KPSVVIYNILINGFVKSGRFNKALGFYDRMLSDRV 215

[Close]
BLAST of Cla97C06G110510 vs. NCBI nr
Match: XP_022925788.1 (pentatricopeptide repeat-containing protein At2g36240 [Cucurbita moschata])

HSP 1 Score: 285.0 bits (728), Expect = 4.8e-73
Identity = 165/215 (76.74%), Postives = 177/215 (82.33%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTP+   P PLPDAIL  XXXXXXXXXXXXXX                 
Sbjct: 1   MKKLPPILRKLQTPKPAPPPPLPDAILXXXXXXXXXXXXXXXXSAPHHYAQLLHFLKTHL 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
                   XXXXXXX  HFHPKFTHYDFHIFNWAS+IDSFRHDHSTFAWM+RTLA TDRF
Sbjct: 61  TLPFTPNNXXXXXXXKLHFHPKFTHYDFHIFNWASSIDSFRHDHSTFAWMSRTLAATDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
            ELKSLL FLASSPCPCSDGIFSCPQTESIFQF+I+AYCRA KFDEAVFAFD+M+K+IDG
Sbjct: 121 AELKSLLLFLASSPCPCSDGIFSCPQTESIFQFAITAYCRAAKFDEAVFAFDSMKKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           +PSVV+YN+LINGFVKSGRF+KA GFYDRMLSDRV
Sbjct: 181 KPSVVIYNILINGFVKSGRFNKALGFYDRMLSDRV 215

[Close]
BLAST of Cla97C06G110510 vs. TrEMBL
Match: tr|A0A1S3CB10|A0A1S3CB10_CUCME (pentatricopeptide repeat-containing protein At2g36240 OS=Cucumis melo OX=3656 GN=LOC103498941 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.2e-75
Identity = 170/215 (79.07%), Postives = 178/215 (82.79%), Query Frame = 0 

Query: 1   MKKLPPILRKLQTPQSISPSPLPDAILPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MKKLPPILRKLQTPQ  SPSPLP+AILP                             XXX
Sbjct: 1   MKKLPPILRKLQTPQPTSPSPLPNAILPLSPQTPPAPLLNLSLSSPHHYNQLLHFLKXXX 60

Query: 61  XXXXXXXXXXXXXXXXXHFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRF 120
           XXXXXXXXXXXXXXXXX  HPKFTHYDFH+FNWASTIDSFRHDHSTFAWMARTLATTDRF
Sbjct: 61  XXXXXXXXXXXXXXXXXXXHPKFTHYDFHVFNWASTIDSFRHDHSTFAWMARTLATTDRF 120

Query: 121 TELKSLLKFLASSPCPCSDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDG 180
           TEL SLL+FLASSPCPCSDGIFSCPQTES+FQ SISAYCRARKFDEAVFAFD+MRK+IDG
Sbjct: 121 TELTSLLRFLASSPCPCSDGIFSCPQTESVFQLSISAYCRARKFDEAVFAFDSMRKLIDG 180

Query: 181 RPSVVVYNVLINGFVKSGRFDKAFGFYDRMLSDRV 216
           RPSVVVYN+LINGFVKSGRFDKA GFY RM+SDRV
Sbjct: 181 RPSVVVYNILINGFVKSGRFDKALGFYGRMISDRV 215

[Close]
BLAST of Cla97C06G110510 vs. TrEMBL
Match: tr|A0A251N9Z7|A0A251N9Z7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G109800 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.0e-55
Identity = 102/138 (73.91%), Postives = 119/138 (86.23%), Query Frame = 0 

Query: 78  HFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPC 137
           H HP F H+DFH+FNWAS+IDSFRHDHSTF WMARTLA TDRF EL SLL F+ S+PCPC
Sbjct: 112 HHHPTFAHFDFHVFNWASSIDSFRHDHSTFEWMARTLAITDRFVELGSLLSFMVSNPCPC 171

Query: 138 SDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKS 197
           SDGIFSCP+TE IFQF+I+AYCR  + D+AV AFD+MRK+IDGRPSVVVYN+LI+GFVK 
Sbjct: 172 SDGIFSCPRTEPIFQFAINAYCRVGRLDDAVNAFDSMRKLIDGRPSVVVYNILIHGFVKC 231

Query: 198 GRFDKAFGFYDRMLSDRV 216
           G+ DKA G YD+M+ DRV
Sbjct: 232 GQHDKALGLYDKMMKDRV 249

[Close]
BLAST of Cla97C06G110510 vs. TrEMBL
Match: tr|A0A2P6RBY5|A0A2P6RBY5_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0473791 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 97/138 (70.29%), Postives = 116/138 (84.06%), Query Frame = 0 

Query: 78  HFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPC 137
           H HP FTH+DFH+FNWAS++DSFRHDHSTF WM  TLATTDRF EL  L+ F+ S+PCPC
Sbjct: 84  HHHPTFTHFDFHVFNWASSVDSFRHDHSTFEWMVCTLATTDRFAELGHLIGFMVSNPCPC 143

Query: 138 SDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKS 197
           SDGIFSCP+TE IF+F+ISAYCR  +  +AV AFD+MRK+IDG+PSVVVYN++INGFVK 
Sbjct: 144 SDGIFSCPRTEPIFKFAISAYCRVGRLGDAVSAFDSMRKLIDGKPSVVVYNIVINGFVKC 203

Query: 198 GRFDKAFGFYDRMLSDRV 216
           G  DKA GFY++M  DRV
Sbjct: 204 GAHDKALGFYEKMGRDRV 221

[Close]
BLAST of Cla97C06G110510 vs. TrEMBL
Match: tr|A0A2P5B0Y1|A0A2P5B0Y1_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_281740 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 1.8e-52
Identity = 94/137 (68.61%), Postives = 118/137 (86.13%), Query Frame = 0 

Query: 78  HFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPC 137
           H+HP FTHYDFHIFNWASTIDS+RHDHSTF WMAR LA+TDRF EL SLL+F+ ++PCPC
Sbjct: 86  HYHPNFTHYDFHIFNWASTIDSYRHDHSTFEWMARALASTDRFAELGSLLRFMIANPCPC 145

Query: 138 SDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKS 197
           +DGIFSC + E IF F+I+AYCRA K +EA+ AFD+M+K+IDG+P+VV+ N+L+NGFVK+
Sbjct: 146 NDGIFSCSRIEPIFHFAINAYCRAGKVNEAILAFDSMKKLIDGKPNVVICNILVNGFVKN 205

Query: 198 GRFDKAFGFYDRMLSDR 215
           G  DKA  FY+RM+ DR
Sbjct: 206 GEHDKALEFYNRMVKDR 222

[Close]
BLAST of Cla97C06G110510 vs. TrEMBL
Match: tr|A0A061F174|A0A061F174_THECC (Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao OX=3641 GN=TCM_022597 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.0e-52
Identity = 94/138 (68.12%), Postives = 120/138 (86.96%), Query Frame = 0 

Query: 78  HFHPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPC 137
           H HP FTHYDF +F+WASTIDSF HDHST+ WMA +LA++ RF++L+SLL F+A++PCPC
Sbjct: 79  HHHPVFTHYDFQVFSWASTIDSFHHDHSTYLWMAHSLASSHRFSQLRSLLSFIAANPCPC 138

Query: 138 SDGIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKS 197
           S GIFSCPQ E +F+F I ++CRARK ++AVFAF+TM+K+IDGRPSVV+YNVLING++K+
Sbjct: 139 SPGIFSCPQMEPLFRFVIDSFCRARKLNDAVFAFETMKKLIDGRPSVVIYNVLINGYLKN 198

Query: 198 GRFDKAFGFYDRMLSDRV 216
           G FDKA GFY+RM  DRV
Sbjct: 199 GDFDKALGFYERMERDRV 216

[Close]
BLAST of Cla97C06G110510 vs. Swiss-Prot
Match: sp|Q9SJN2|PP187_ARATH (Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX=3702 GN=At2g36240 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 2.0e-46
Identity = 82/135 (60.74%), Postives = 107/135 (79.26%), Query Frame = 0 

Query: 80  HPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPCSD 139
           HP + HYDF +FNWA+T+D+FRHDH +F WM+R+LA T RF +L  LL F+A++PCPCS 
Sbjct: 89  HPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSS 148

Query: 140 GIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKSGR 199
           GIFSCP+ E IF+ +I AYCRARK D A+ AFDTM+++IDG+P+V VYN ++NG+VKSG 
Sbjct: 149 GIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGD 208

Query: 200 FDKAFGFYDRMLSDR 215
            DKA  FY RM  +R
Sbjct: 209 MDKALRFYQRMGKER 223

[Close]
BLAST of Cla97C06G110510 vs. TAIR10
Match: AT2G36240.1 (pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 188.3 bits (477), Expect = 1.1e-47
Identity = 82/135 (60.74%), Postives = 107/135 (79.26%), Query Frame = 0 

Query: 80  HPKFTHYDFHIFNWASTIDSFRHDHSTFAWMARTLATTDRFTELKSLLKFLASSPCPCSD 139
           HP + HYDF +FNWA+T+D+FRHDH +F WM+R+LA T RF +L  LL F+A++PCPCS 
Sbjct: 89  HPLYAHYDFAVFNWAATLDTFRHDHDSFLWMSRSLAATHRFDDLYRLLSFVAANPCPCSS 148

Query: 140 GIFSCPQTESIFQFSISAYCRARKFDEAVFAFDTMRKMIDGRPSVVVYNVLINGFVKSGR 199
           GIFSCP+ E IF+ +I AYCRARK D A+ AFDTM+++IDG+P+V VYN ++NG+VKSG 
Sbjct: 149 GIFSCPELEPIFRSAIDAYCRARKMDYALLAFDTMKRLIDGKPNVGVYNTVVNGYVKSGD 208

Query: 200 FDKAFGFYDRMLSDR 215
            DKA  FY RM  +R
Sbjct: 209 MDKALRFYQRMGKER 223

The following BLAST results are available for this feature:
BLAST of Cla97C06G110510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140672.12.1e-7680.00PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis sativu... [more]
XP_008459992.11.7e-7579.07PREDICTED: pentatricopeptide repeat-containing protein At2g36240 [Cucumis melo] ... [more]
XP_022977415.13.3e-7476.28pentatricopeptide repeat-containing protein At2g36240 [Cucurbita maxima][more]
XP_023543149.19.6e-7476.74pentatricopeptide repeat-containing protein At2g36240 [Cucurbita pepo subsp. pep... [more]
XP_022925788.14.8e-7376.74pentatricopeptide repeat-containing protein At2g36240 [Cucurbita moschata][more]
BLAST of Cla97C06G110510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CB10|A0A1S3CB10_CUCME1.2e-7579.07pentatricopeptide repeat-containing protein At2g36240 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A251N9Z7|A0A251N9Z7_PRUPE1.0e-5573.91Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G109800 PE=4 SV=1[more]
tr|A0A2P6RBY5|A0A2P6RBY5_ROSCH1.1e-5270.29Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0473791 P... [more]
tr|A0A2P5B0Y1|A0A2P5B0Y1_PARAD1.8e-5268.61Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni... [more]
tr|A0A061F174|A0A061F174_THECC4.0e-5268.12Pentatricopeptide (PPR) repeat-containing protein, putative OS=Theobroma cacao O... [more]
BLAST of Cla97C06G110510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SJN2|PP187_ARATH2.0e-4660.74Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana OX... [more]
BLAST of Cla97C06G110510 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36240.11.1e-4760.74pentatricopeptide (PPR) repeat-containing protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C06G110510.1Cla97C06G110510.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 84..236
e-value: 1.2E-25
score: 92.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 246..318
e-value: 4.6E-17
score: 64.1
coord: 419..487
e-value: 6.2E-8
score: 34.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 319..418
e-value: 9.6E-16
score: 59.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 422..472
e-value: 5.1E-5
score: 23.2
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 185..219
e-value: 1.4E-10
score: 38.7
coord: 220..254
e-value: 4.6E-13
score: 46.5
coord: 363..394
e-value: 1.2E-4
score: 20.0
coord: 255..287
e-value: 7.8E-7
score: 26.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 155..176
e-value: 0.011
score: 15.8
coord: 185..214
e-value: 7.5E-8
score: 32.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 217..265
e-value: 1.1E-18
score: 67.0
coord: 359..406
e-value: 2.7E-8
score: 33.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 393..427
score: 8.495
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 253..287
score: 10.896
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 428..462
score: 9.723
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 183..217
score: 12.737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 323..357
score: 6.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 103..137
score: 5.108
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 288..322
score: 8.462
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 147..177
score: 7.783
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 218..252
score: 14.864
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 358..392
score: 9.832
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 41..480
NoneNo IPR availablePANTHERPTHR24015:SF973SUBFAMILY NOT NAMEDcoord: 41..480
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 157..285

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C06G110510Cla007047Watermelon (97103) v1wmwmbB407
Cla97C06G110510Csa6G087810Cucumber (Chinese Long) v2cuwmbB468
Cla97C06G110510MELO3C022409Melon (DHL92) v3.5.1mewmbB127
Cla97C06G110510ClCG06G001250Watermelon (Charleston Gray)wcgwmbB273
Cla97C06G110510CSPI06G06830Wild cucumber (PI 183967)cpiwmbB495
Cla97C06G110510Cucsa.348690Cucumber (Gy14) v1cgywmbB596
Cla97C06G110510Lsi09G018150Bottle gourd (USVL1VR-Ls)lsiwmbB026
Cla97C06G110510CsGy6G006840Cucumber (Gy14) v2cgybwmbB446
Cla97C06G110510MELO3C022409.2Melon (DHL92) v3.6.1medwmbB118
Cla97C06G110510CsaV3_6G007180Cucumber (Chinese Long) v3cucwmbB487
Cla97C06G110510Bhi12G002065Wax gourdwgowmbB086
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C06G110510Cucurbita maxima (Rimu)cmawmbB925