Cla97C05G095540 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G095540
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DTW domain-containing protein 2
Location	Cla97Chr05 : 22063480 .. 22063857 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAGTAATAAAAGATCACCCTGAGGGGCTGGATGGATTTGTTTGA

mRNA sequence

ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAGTAATAAAAGATCACCCTGAGGGGCTGGATGGATTTGTTTGA

Coding sequence (CDS)

ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAGTAATAAAAGATCACCCTGAGGGGCTGGATGGATTTGTTTGA

Protein sequence

MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNSVNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTIALKVIKDHPEGLDGFV

Homology

[Close]

BLAST of Cla97C05G095540 vs. NCBI nr
Match: XP_009607395.1 (PREDICTED: DTW domain-containing protein 2 [Nicotiana tomentosiformis])

HSP 1 Score: 129.4 bits (324), Expect = 8.4e-27
Identity = 78/205 (38.05%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 9   KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS-------------- 68
           KRP+CPS SKP R+C C+RL++P L+NS+ V  LQHSLEKKHPLNS              
Sbjct: 46  KRPMCPSCSKPIRLCLCTRLKTPCLQNSVAVTILQHSLEKKHPLNSTRIASIEKYDANCS 105

Query: 69  ------------------------------------------------------------ 123
                                                                       
Sbjct: 106 FQNQDLSKLFGSRAATDDIRKGFLVKKLQRKPLNGSSEYQESEEFEVAVPPGSVLLFPSE 165

[Close]

BLAST of Cla97C05G095540 vs. NCBI nr
Match: XP_016514285.1 (PREDICTED: DTW domain-containing protein 2-like [Nicotiana tabacum])

HSP 1 Score: 129.4 bits (324), Expect = 8.4e-27
Identity = 78/205 (38.05%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 9   KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS-------------- 68
           KRP+CPS SKP R+C C+RL++P L+NS+ V  LQHSLEKKHPLNS              
Sbjct: 46  KRPMCPSCSKPIRLCLCTRLKTPCLQNSVAVTILQHSLEKKHPLNSTRIASIEKYGANCS 105

Query: 69  ------------------------------------------------------------ 123
                                                                       
Sbjct: 106 FQNQDLSKLFGSRAATDDIRKGFLVKKLQRKPLNGSSEYQESEEFEVAVPPGSVLLFPSE 165

[Close]

BLAST of Cla97C05G095540 vs. NCBI nr
Match: XP_022976533.1 (uncharacterized protein LOC111476900 isoform X1 [Cucurbita maxima])

HSP 1 Score: 126.3 bits (316), Expect = 7.2e-26
Identity = 99/301 (32.89%), Postives = 105/301 (34.88%), Query Frame = 0


Query: 1   MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------ 60
           M D P S  R VCPS SKP RIC CSRLQSPSLENS+ VI LQHSLEKKHPLNS      
Sbjct: 35  MADVPPSSGRLVCPSCSKPARICLCSRLQSPSLENSVGVIILQHSLEKKHPLNSSRIAKL 94

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 95  GLKNVEIATVSDVNFEARFTIRLPELNSDEEFSFGNGQNAAQKPQIQVQNRDESLVDKPT 154

Query: 121 ------------------------------------------------------------ 123
                                                                       
Sbjct: 155 CTKSDEGAAITATIGKYGVVNSFDHIWMHQPSLQDLKIDETFASPEIRASMAKGFIVKKL 214

[Close]

BLAST of Cla97C05G095540 vs. NCBI nr
Match: XP_023535710.1 (uncharacterized protein LOC111797060 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125.2 bits (313), Expect = 1.6e-25
Identity = 98/301 (32.56%), Postives = 105/301 (34.88%), Query Frame = 0


Query: 1   MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------ 60
           M D P S  R VCPS SKP RIC CSRLQ+PSLENS+ VI LQHSLEKKHPLNS      
Sbjct: 35  MADVPPSTGRLVCPSCSKPARICLCSRLQNPSLENSVGVIILQHSLEKKHPLNSSRIAKL 94

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 95  GLKNVAIATVSDVNFEARFTIRLPELNSDEEFSFGNGQNAAQKPQIQVQNRDESLVDKPT 154

Query: 121 ------------------------------------------------------------ 123
                                                                       
Sbjct: 155 CTKSDEGAAITATIGKYGVVNSFDHIWMHQPSLQDLKIDEVFASPEIRASMAKGFIVKKL 214

[Close]

BLAST of Cla97C05G095540 vs. NCBI nr
Match: XP_022936180.1 (uncharacterized protein LOC111442857 isoform X1 [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 6.1e-25
Identity = 97/301 (32.23%), Postives = 104/301 (34.55%), Query Frame = 0


Query: 1   MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------ 60
           M D P S  R VCPS SKP RIC CSRL +PSLENS+ VI LQHSLEKKHPLNS      
Sbjct: 35  MADVPPSTGRLVCPSCSKPARICLCSRLHNPSLENSVGVIILQHSLEKKHPLNSSRIAKL 94

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 95  GLKNVEIAPVSDVNFEARFTIRLPELNSDEEFSFGNGQNAAQKPQIQVQNRDESLVGKPT 154

Query: 121 ------------------------------------------------------------ 123
                                                                       
Sbjct: 155 CTKSDEGAAITATIGKYGVVNSFKHIWMHQPSLQDLKIDEIFASPEIRSSMAKGFIVKKL 214

[Close]

BLAST of Cla97C05G095540 vs. TrEMBL
Match: tr|A0A1S4DLJ3|A0A1S4DLJ3_TOBAC (DTW domain-containing protein 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107831073 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.6e-27
Identity = 78/205 (38.05%), Postives = 99/205 (48.29%), Query Frame = 0


Query: 9   KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS-------------- 68
           KRP+CPS SKP R+C C+RL++P L+NS+ V  LQHSLEKKHPLNS              
Sbjct: 46  KRPMCPSCSKPIRLCLCTRLKTPCLQNSVAVTILQHSLEKKHPLNSTRIASIEKYGANCS 105

Query: 69  ------------------------------------------------------------ 123
                                                                       
Sbjct: 106 FQNQDLSKLFGSRAATDDIRKGFLVKKLQRKPLNGSSEYQESEEFEVAVPPGSVLLFPSE 165

[Close]

BLAST of Cla97C05G095540 vs. TrEMBL
Match: tr|A0A1S3BZW7|A0A1S3BZW7_CUCME (uncharacterized protein LOC103495005 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495005 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.6e-24
Identity = 92/303 (30.36%), Postives = 104/303 (34.32%), Query Frame = 0


Query: 1   MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------ 60
           M D   S +RPVCPS SKP RIC CSR +SPSLENS+ +I LQHS EK HPLNS      
Sbjct: 34  MADVLPSSRRPVCPSCSKPARICLCSRFRSPSLENSVGIIILQHSSEKNHPLNSARIAKL 93

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 94  GLKNVDIATVSDVNFEAHFTIRLPEPNSAAQNLDPDAECSFRNGHNATQKSQIQDESIVD 153

Query: 121 ------------------------------------------------------------ 123
                                                                       
Sbjct: 154 KLNSTKANKGAAISATIGKYGVVNSFDHIWMQQPGFQELKINEVLASPEIRASLAKGFIV 213

[Close]

BLAST of Cla97C05G095540 vs. TrEMBL
Match: tr|A0A0A0LD09|A0A0A0LD09_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851850 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.6e-24
Identity = 93/303 (30.69%), Postives = 104/303 (34.32%), Query Frame = 0


Query: 1   MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------ 60
           M D   S +RPVCPS SKP RIC CSR +S S+ENS+ VI LQHSLEK HPLNS      
Sbjct: 45  MADVLPSSRRPVCPSCSKPARICLCSRFRSSSVENSVGVIILQHSLEKNHPLNSARIVKL 104

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 105 GLKNVEIATVSDVNFEARFTIRLPEPNSAAQNLDPDIECSFRNGHGTIQKPQIQDGSIVD 164

Query: 121 ------------------------------------------------------------ 123
                                                                       
Sbjct: 165 KLNCTKTNEGAAISVTIGKHGVVNSFDHIWMQLPGFQELKINEFLASPEIRASLAKGFIV 224

[Close]

BLAST of Cla97C05G095540 vs. TrEMBL
Match: tr|A0A068UC44|A0A068UC44_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021016001 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.1e-22
Identity = 83/270 (30.74%), Postives = 98/270 (36.30%), Query Frame = 0


Query: 7   SFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS------------ 66
           S KRP+CP  SKP RIC C+RL++PSLENS+ V  LQH LEKKHPLNS            
Sbjct: 7   SSKRPMCPKCSKPARICLCTRLKAPSLENSVAVTILQHGLEKKHPLNSTRIASLGLRNLT 66

Query: 67  ------------------------------------------------------------ 126
                                                                       
Sbjct: 67  VVSVSDVNFEGRFVLDFSYPDSKTGSSHWDRNITDFGGIGNGDAVVAFTIEKYGAIASLC 126

[Close]

BLAST of Cla97C05G095540 vs. TrEMBL
Match: tr|F6HEP2|F6HEP2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0090g00210 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 0


Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI----- 114
           V NLIVL+GTWAKAKR+Y ENPWL++LPH+KL+++ MSL+SEVRHQPK G+ STI     
Sbjct: 239 VKNLIVLDGTWAKAKRMYNENPWLKLLPHLKLEVEKMSLYSEVRHQPKAGYLSTIESIVY 298

Query: 115 ALKVIKDHPEGLDGFV 126
           +LK + D+PEGLDG +
Sbjct: 299 SLKAVGDNPEGLDGLL 314

HSP 2 Score: 69.3 bits (168), Expect = 6.9e-09
Identity = 45/121 (37.19%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 9   KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS--VNNLIVLNGTWA 68
           KRP+CPS SKP R C CSR+    LEN + V  LQHSLE+KHPLNS  +  L + N T A
Sbjct: 8   KRPICPSCSKPARTCLCSRIPIRGLENKVGVTILQHSLERKHPLNSTRIATLGLKNLTVA 67

Query: 69  KAKRIYKENPW-LRILP----HMKLDLKNMSLFSEVRHQPKFGFFSTIALKVIKDHPEGL 123
               +  E  + +R+L        L+  +    S  R   K GF +   +  ++  P+ +
Sbjct: 68  SVSDVNFEAQFEIRLLELGLGRNGLESLDFDQGSGYRETLKLGFENVNGVNSVEKRPQVI 127

[Close]

BLAST of Cla97C05G095540 vs. TAIR10
Match: AT5G54880.1 (DTW domain-containing protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-18
Identity = 52/108 (48.15%), Postives = 71/108 (65.74%), Query Frame = 0


Query: 24  PCSRLQSPSLENSIEVIFLQHSLEKKHPLNSVNNLIVLNGTWAKAKRIYKENPWLRILP- 83
           P S L  PS E S+++ +L+   E K     V NLIVL+GTW+KA+RIY ENPWL++L  
Sbjct: 271 PGSALLFPS-EESVKINYLKEKEELK-----VRNLIVLDGTWSKARRIYLENPWLKLLRC 330

Query: 84  HMKLDLKNMSLFSEVRHQPKFGFFSTI-----ALKVIKDHPEGLDGFV 126
           H+KL+++  SL+ EVR QP+ G  STI     A+K I + PEGLD  +
Sbjct: 331 HVKLEIEGTSLYKEVRRQPRAGCLSTIESIVYAMKEIGEDPEGLDNML 372

The following BLAST results are available for this feature:

BLAST of Cla97C05G095540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009607395.1	8.4e-27	38.05	PREDICTED: DTW domain-containing protein 2 [Nicotiana tomentosiformis]	[more]
XP_016514285.1	8.4e-27	38.05	PREDICTED: DTW domain-containing protein 2-like [Nicotiana tabacum]	[more]
XP_022976533.1	7.2e-26	32.89	uncharacterized protein LOC111476900 isoform X1 [Cucurbita maxima]	[more]
XP_023535710.1	1.6e-25	32.56	uncharacterized protein LOC111797060 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022936180.1	6.1e-25	32.23	uncharacterized protein LOC111442857 isoform X1 [Cucurbita moschata]	[more]

BLAST of Cla97C05G095540 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DLJ3\|A0A1S4DLJ3_TOBAC	5.6e-27	38.05	DTW domain-containing protein 2-like OS=Nicotiana tabacum OX=4097 GN=LOC10783107...	[more]
tr\|A0A1S3BZW7\|A0A1S3BZW7_CUCME	7.6e-24	30.36	uncharacterized protein LOC103495005 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0LD09\|A0A0A0LD09_CUCSA	7.6e-24	30.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851850 PE=4 SV=1	[more]
tr\|A0A068UC44\|A0A068UC44_COFCA	4.1e-22	30.74	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00021016001 PE=4 ...	[more]
tr\|F6HEP2\|F6HEP2_VITVI	6.0e-21	64.47	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_19s0090g00210 PE=4 SV=...	[more]

BLAST of Cla97C05G095540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G095540 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54880.1	1.0e-18	48.15	DTW domain-containing protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR039262	DTWD2
IPR005636	DTW

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G095540.1	Cla97C05G095540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005636	DTW	SMART	SM01144	DTW_2a	coord: 9..118 e-value: 3.6E-4 score: 8.9
IPR005636	DTW	PFAM	PF03942	DTW	coord: 10..55 e-value: 4.9E-7 score: 29.5 coord: 55..110 e-value: 5.9E-16 score: 58.6
IPR039262	DTW domain-containing protein 2	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 55..122
IPR039262	DTW domain-containing protein 2	PANTHER	PTHR21392	UNCHARACTERIZED	coord: 7..55
None	No IPR available	PANTHER	PTHR21392:SF2	SUBFAMILY NOT NAMED	coord: 55..122
None	No IPR available	PANTHER	PTHR21392:SF2	SUBFAMILY NOT NAMED	coord: 7..55

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G095540	ClCG05G014280	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G095540	Bhi09G001603	Wax gourd	wgowmbB573

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G095540	Silver-seed gourd	carwmbB0385
Cla97C05G095540	Silver-seed gourd	carwmbB0457
Cla97C05G095540	Cucumber (Gy14) v2	cgybwmbB208
Cla97C05G095540	Cucurbita maxima (Rimu)	cmawmbB126
Cla97C05G095540	Cucurbita maxima (Rimu)	cmawmbB265
Cla97C05G095540	Cucurbita moschata (Rifu)	cmowmbB110
Cla97C05G095540	Cucurbita moschata (Rifu)	cmowmbB245
Cla97C05G095540	Wild cucumber (PI 183967)	cpiwmbB223
Cla97C05G095540	Cucumber (Chinese Long) v3	cucwmbB219
Cla97C05G095540	Cucumber (Chinese Long) v2	cuwmbB217
Cla97C05G095540	Bottle gourd (USVL1VR-Ls)	lsiwmbB402
Cla97C05G095540	Melon (DHL92) v3.6.1	medwmbB426
Cla97C05G095540	Melon (DHL92) v3.6.1	medwmbB429
Cla97C05G095540	Melon (DHL92) v3.5.1	mewmbB438
Cla97C05G095540	Watermelon (97103) v1	wmwmbB207
Cla97C05G095540	Wax gourd	wgowmbB181