ClCG05G014280 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G014280
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionDTW domain containing protein
LocationCG_Chr05 : 23615967 .. 23616593 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAGTAATAAAAGATCACCCTGAGGGGCTGGATGGATTTGTTTGATGTTTTTTAGTCTATGATAGGAGATCAAAGGAGATGTAAAGATGAGAGGCTGAAAATTACTTGTCAACTTTAAGCTTTTTCTCCCAAATCAAAATGGGTAGCACTTAATCTGATTCTTGATGAATATGCATCAACTGACGAGACGTTGAGATGGCGAAAAAGCGTTGCTGAAGTAGCACGAGCAGGCCTCTATTGAATTTTCTGTGTTAGGATTTATAGAGCTTTGATTCTCAATTGACAAAGGGGTAA

mRNA sequence

ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAAGCTTTGATTCTCAATTGACAAAGGGGTAA

Coding sequence (CDS)

ATGGTGGATTTTCCTCGCAGTTTCAAAAGGCCCGTCTGTCCATCCTACTCGAAACCGACCCGTATATGTCCTTGTTCGCGGCTCCAAAGCCCTAGTCTTGAGAACTCAATCGAAGTAATATTTCTTCAGCATAGTTTAGAGAAAAAGCACCCGCTAAATTCTGTTAATAATTTGATAGTTTTAAATGGAACATGGGCAAAAGCAAAGAGAATATACAAGGAAAATCCTTGGTTGAGAATTTTGCCACATATGAAGTTGGATTTAAAGAACATGAGCTTGTTTAGTGAAGTGAGACATCAGCCTAAGTTTGGTTTTTTCTCCACCATTGCCTTGAAAAGCTTTGATTCTCAATTGACAAAGGGGTAA

Protein sequence

MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNSVNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTIALKSFDSQLTKG
Homology
[Close]
BLAST of ClCG05G014280 vs. TrEMBL
Match: A0A0A0LD09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851850 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           +NNLIVL+GTWAKAKR+Y ENPWLR+LPHMKLDL+ MSL+SEVRHQPK GF STI
Sbjct: 275 INNLIVLDGTWAKAKRMYNENPWLRLLPHMKLDLEIMSLYSEVRHQPKIGFLSTI 329

[Close]
BLAST of ClCG05G014280 vs. TrEMBL
Match: A0A0A0LD09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851850 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-11
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 1  MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          M D   S +RPVCPS SKP RIC CSR +S S+ENS+ VI LQHSLEK HPLNS
Sbjct: 45 MADVLPSSRRPVCPSCSKPARICLCSRFRSSSVENSVGVIILQHSLEKNHPLNS 98


HSP 2 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTW+KAKR+YKENPWL++LPH+KLDL  MSL+SEVRHQPK G+ STI
Sbjct: 297 VKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 351

[Close]
BLAST of ClCG05G014280 vs. TrEMBL
Match: A0A067FHF1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048101mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 9  KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          KR +CPS SKPTR+C C+R+Q P LENS+ V  LQHSLE+ HPLNS
Sbjct: 9  KRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNS 54


HSP 2 Score: 95.9 bits (237), Expect = 3.6e-17
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTW+KAKR+YKENPWL++LPH+KLDL  MSL+SEVRHQPK G+ STI
Sbjct: 327 VKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 381

[Close]
BLAST of ClCG05G014280 vs. TrEMBL
Match: V4UMM2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008359mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 9  KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          KR +CPS SKPTR+C C+R+Q P LENS+ V  LQHSLE+ HPLNS
Sbjct: 39 KRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNS 84


HSP 2 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 40/55 (72.73%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTWAKAKR+Y ENPWL++LPH+KL+++ MSL+SEVRHQPK G+ STI
Sbjct: 239 VKNLIVLDGTWAKAKRMYNENPWLKLLPHLKLEVEKMSLYSEVRHQPKAGYLSTI 293

[Close]
BLAST of ClCG05G014280 vs. TrEMBL
Match: F6HEP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00210 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1 

Query: 9  KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          KRP+CPS SKP R C CSR+    LEN + V  LQHSLE+KHPLNS
Sbjct: 8  KRPICPSCSKPARTCLCSRIPIRGLENKVGVTILQHSLERKHPLNS 53


HSP 2 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTW+KA RIY ENPWL++LPHM+LDL  MSL+SE+RHQPK GF STI
Sbjct: 373 VENLIVLDGTWSKAGRIYNENPWLKLLPHMRLDLDKMSLYSEIRHQPKAGFLSTI 427

[Close]
BLAST of ClCG05G014280 vs. TAIR10
Match: AT5G54880.1 (AT5G54880.1 DTW domain-containing protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-15
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = 1 

Query: 24  PCSRLQSPSLENSIEVIFLQHSLEKKHPLNSVNNLIVLNGTWAKAKRIYKENPWLRILP- 83
           P S L  PS E S+++ +L+   E K     V NLIVL+GTW+KA+RIY ENPWL++L  
Sbjct: 271 PGSALLFPS-EESVKINYLKEKEELK-----VRNLIVLDGTWSKARRIYLENPWLKLLRC 330

Query: 84  HMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           H+KL+++  SL+ EVR QP+ G  STI
Sbjct: 331 HVKLEIEGTSLYKEVRRQPRAGCLSTI 351


HSP 2 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 

Query: 9  KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          KRP CPS  KP+++C C +++SP  +N + +  LQHSLE+KH LNS
Sbjct: 44 KRPTCPSCDKPSQLCLCKKMRSPCFDNQVSITILQHSLERKHALNS 89

[Close]
BLAST of ClCG05G014280 vs. NCBI nr
Match: gi|700204752|gb|KGN59885.1| (hypothetical protein Csa_3G851850 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           +NNLIVL+GTWAKAKR+Y ENPWLR+LPHMKLDL+ MSL+SEVRHQPK GF STI
Sbjct: 275 INNLIVLDGTWAKAKRMYNENPWLRLLPHMKLDLEIMSLYSEVRHQPKIGFLSTI 329

[Close]
BLAST of ClCG05G014280 vs. NCBI nr
Match: gi|700204752|gb|KGN59885.1| (hypothetical protein Csa_3G851850 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 1  MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          M D   S +RPVCPS SKP RIC CSR +S S+ENS+ VI LQHSLEK HPLNS
Sbjct: 45 MADVLPSSRRPVCPSCSKPARICLCSRFRSSSVENSVGVIILQHSLEKNHPLNS 98


HSP 2 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 45/55 (81.82%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           +NNLIVL+GTWAKAKR+Y ENPWLR+LPHMKLDL+ MSL+SEVRHQPK GF STI
Sbjct: 264 INNLIVLDGTWAKAKRMYNENPWLRLLPHMKLDLEIMSLYSEVRHQPKIGFLSTI 318

[Close]
BLAST of ClCG05G014280 vs. NCBI nr
Match: gi|778686396|ref|XP_004150112.2| (PREDICTED: uncharacterized protein LOC101217537 [Cucumis sativus])

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-11
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 1  MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          M D   S +RPVCPS SKP RIC CSR +S S+ENS+ VI LQHSLEK HPLNS
Sbjct: 34 MADVLPSSRRPVCPSCSKPARICLCSRFRSSSVENSVGVIILQHSLEKNHPLNS 87


HSP 2 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           +N+LIVL+GTWAKAKR+Y ENPWLR+LPHMKLDL+ MSL+SEVRHQPK GF STI
Sbjct: 264 INHLIVLDGTWAKAKRMYNENPWLRLLPHMKLDLEMMSLYSEVRHQPKIGFLSTI 318

[Close]
BLAST of ClCG05G014280 vs. NCBI nr
Match: gi|659109316|ref|XP_008454653.1| (PREDICTED: uncharacterized protein LOC103495005 isoform X1 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 6.5e-12
Identity = 37/54 (68.52%), Postives = 41/54 (75.93%), Query Frame = 1 

Query: 1  MVDFPRSFKRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          M D   S +RPVCPS SKP RIC CSR +SPSLENS+ +I LQHS EK HPLNS
Sbjct: 34 MADVLPSSRRPVCPSCSKPARICLCSRFRSPSLENSVGIIILQHSSEKNHPLNS 87


HSP 2 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTW+KAKR+YKENPWL++LPH+KLDL  MSL+SEVRHQPK G+ STI
Sbjct: 297 VKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 351

[Close]
BLAST of ClCG05G014280 vs. NCBI nr
Match: gi|641843718|gb|KDO62616.1| (hypothetical protein CISIN_1g048101mg [Citrus sinensis])

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-10
Identity = 31/46 (67.39%), Postives = 37/46 (80.43%), Query Frame = 1 

Query: 9  KRPVCPSYSKPTRICPCSRLQSPSLENSIEVIFLQHSLEKKHPLNS 55
          KR +CPS SKPTR+C C+R+Q P LENS+ V  LQHSLE+ HPLNS
Sbjct: 9  KRSICPSCSKPTRLCLCNRIQDPGLENSVSVTILQHSLERNHPLNS 54


HSP 2 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 

Query: 55  VNNLIVLNGTWAKAKRIYKENPWLRILPHMKLDLKNMSLFSEVRHQPKFGFFSTI 110
           V NLIVL+GTW+KAKR+YKENPWL++LPH+KLDL  MSL+SEVRHQPK G+ STI
Sbjct: 327 VKNLIVLDGTWSKAKRMYKENPWLKLLPHLKLDLDKMSLYSEVRHQPKAGYLSTI 381

The following BLAST results are available for this feature:
BLAST of ClCG05G014280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD09_CUCSA1.1e-1881.82Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851850 PE=4 SV=1[more]
A0A0A0LD09_CUCSA1.3e-1168.52Uncharacterized protein OS=Cucumis sativus GN=Csa_3G851850 PE=4 SV=1[more]
A0A067FHF1_CITSI1.9e-1067.39Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g048101mg PE=4 SV=1[more]
V4UMM2_9ROSI1.9e-1067.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10008359mg PE=4 SV=1[more]
F6HEP2_VITVI1.0e-0865.22Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0090g00210 PE=4 SV=... [more]
BLAST of ClCG05G014280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G54880.11.8e-1550.57 DTW domain-containing protein[more]
BLAST of ClCG05G014280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204752|gb|KGN59885.1|1.6e-1881.82hypothetical protein Csa_3G851850 [Cucumis sativus][more]
gi|700204752|gb|KGN59885.1|1.9e-1168.52hypothetical protein Csa_3G851850 [Cucumis sativus][more]
gi|778686396|ref|XP_004150112.2|1.9e-1168.52PREDICTED: uncharacterized protein LOC101217537 [Cucumis sativus][more]
gi|659109316|ref|XP_008454653.1|6.5e-1268.52PREDICTED: uncharacterized protein LOC103495005 isoform X1 [Cucumis melo][more]
gi|641843718|gb|KDO62616.1|2.7e-1067.39hypothetical protein CISIN_1g048101mg [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005636DTW
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G014280.1ClCG05G014280.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005636DTWPFAMPF03942DTWcoord: 10..55
score: 3.8E-7coord: 56..110
score: 9.3
IPR005636DTWSMARTSM01144DTW_2acoord: 9..121
score: 3.
NoneNo IPR availablePANTHERPTHR21392UNCHARACTERIZEDcoord: 9..109
score: 1.8
NoneNo IPR availablePANTHERPTHR21392:SF2SUBFAMILY NOT NAMEDcoord: 9..109
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G014280Cla97C05G095540Watermelon (97103) v2wcgwmbB229
ClCG05G014280Bhi09G001603Wax gourdwcgwgoB473
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G014280Wax gourdwcgwgoB451
ClCG05G014280Melon (DHL92) v3.5.1mewcgB437
ClCG05G014280Watermelon (97103) v1wcgwmB285
ClCG05G014280Melon (DHL92) v3.6.1medwcgB419