Cla97C05G093630 (gene) Watermelon (97103) v2

Overview
NameCla97C05G093630
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionMyb/SANT-like DNA-binding domain protein
LocationCla97Chr05 : 13083561 .. 13084411 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGTTAGTCGGGGTTCGGCTAGAACAAGGAGTTCAAATGTGTCTAGGTCAAGAGGGAGATTTTCGATTTTTGGGTTCAGGTAAGATTCTAGAAAAAAATTTATCGGTACGTGTTAAATAGGTAAATATTAATAATTTGTACGTGTATCAATGCAAAGTCATCCCAGTGCGAAGGGGATGTGAAACAAGTCATTCCCCCATTACAATGACCTTTCCACCGTATTTGGGAAAGATAGAACAGTAGGACAATCAAGTGAGGACCCACATGTGATGGCGACGAATGCATTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

mRNA sequence

ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

Coding sequence (CDS)

ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

Protein sequence

MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLGSLKRSFDLDRKIVTESPLNQDGMDEEPVEQSIGRATPAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQVTLIDLLITDI
Homology
[Close]
BLAST of Cla97C05G093630 vs. NCBI nr
Match: XP_017696816.1 (PREDICTED: uncharacterized protein LOC103701179 [Phoenix dactylifera])

HSP 1 Score: 87.8 bits (216), Expect = 4.2e-14
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 1   MEDAELVEALLYLV-EIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           MEDA+L+EAL+ LV   GWR +NGTFR GYLQ LE+++ EK+P C L     IE +V+ L
Sbjct: 25  MEDAKLIEALVELVTRRGWRGDNGTFRSGYLQQLERLMEEKLPECGLKATPYIESQVKLL 84

Query: 61  KKQYNAVSEMLGSLKRSFDLD--RKIVTESP 88
           KKQYNA+++MLG     F  D   K VT SP
Sbjct: 85  KKQYNAIAKMLGPNCSGFGWDDINKCVTLSP 115

[Close]
BLAST of Cla97C05G093630 vs. NCBI nr
Match: XP_024022021.1 (uncharacterized protein LOC112091787 [Morus notabilis])

HSP 1 Score: 85.9 bits (211), Expect = 1.6e-13
Identity = 44/102 (43.14%), Postives = 68/102 (66.67%), Query Frame = 0 

Query: 1   MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           +ED++LVE LL +   G W+++NGTF+PGYLQ LE++++EK+P+C L     I+ +V+ L
Sbjct: 60  LEDSKLVECLLDMANSGKWKADNGTFKPGYLQQLEKMMNEKIPQCGLKAQPHIDSRVKIL 119

Query: 61  KKQYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           KKQY+A+SEMLG     F   D D+ +V E  +  + +   P
Sbjct: 120 KKQYHAISEMLGPAGSGFGWNDKDKCVVVEKDVFDEWVKSHP 161

[Close]
BLAST of Cla97C05G093630 vs. NCBI nr
Match: XP_016165039.1 (uncharacterized protein LOC107607624 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYGKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGNGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]
BLAST of Cla97C05G093630 vs. NCBI nr
Match: XP_016172752.1 (uncharacterized protein LOC107615161 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYGKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGNGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]
BLAST of Cla97C05G093630 vs. NCBI nr
Match: XP_025609357.1 (uncharacterized protein LOC112702515 [Arachis hypogaea] >XP_025609358.1 uncharacterized protein LOC112702515 [Arachis hypogaea] >XP_025609359.1 uncharacterized protein LOC112702515 [Arachis hypogaea] >XP_025609361.1 uncharacterized protein LOC112702515 [Arachis hypogaea] >XP_025609362.1 uncharacterized protein LOC112702516 [Arachis hypogaea] >XP_025609363.1 uncharacterized protein LOC112702516 [Arachis hypogaea])

HSP 1 Score: 84.3 bits (207), Expect = 4.7e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYEKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGSGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]
BLAST of Cla97C05G093630 vs. TrEMBL
Match: tr|A0A2H3ZL06|A0A2H3ZL06_PHODC (uncharacterized protein LOC103701179 OS=Phoenix dactylifera OX=42345 GN=LOC103701179 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 49/91 (53.85%), Postives = 62/91 (68.13%), Query Frame = 0 

Query: 1   MEDAELVEALLYLV-EIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           MEDA+L+EAL+ LV   GWR +NGTFR GYLQ LE+++ EK+P C L     IE +V+ L
Sbjct: 25  MEDAKLIEALVELVTRRGWRGDNGTFRSGYLQQLERLMEEKLPECGLKATPYIESQVKLL 84

Query: 61  KKQYNAVSEMLGSLKRSFDLD--RKIVTESP 88
           KKQYNA+++MLG     F  D   K VT SP
Sbjct: 85  KKQYNAIAKMLGPNCSGFGWDDINKCVTLSP 115

[Close]
BLAST of Cla97C05G093630 vs. TrEMBL
Match: tr|A0A2P5D960|A0A2P5D960_PARAD (Myb/SANT-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_085920 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-13
Identity = 43/107 (40.19%), Postives = 70/107 (65.42%), Query Frame = 0 

Query: 1   MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ L
Sbjct: 20  LEDSKLVECLLDITNSGKWKANNGTFKHGYLQQLEKLLNEKIPRCGLKAQPHIDSRIKIL 79

Query: 61  KKQYNAVSEMLGSLKRSFDL---DRKIVTESPLNQDGMDEEPVEQSI 103
           KKQ++A+SEMLG     F+    D+ IV +  + ++ +   P  + +
Sbjct: 80  KKQFHAISEMLGHCGGRFEWNAEDKCIVADKNVYEEWVKSHPTAKGL 126

[Close]
BLAST of Cla97C05G093630 vs. TrEMBL
Match: tr|A0A2P5FL77|A0A2P5FL77_9ROSA (Myb/SANT-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_057890 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.9e-13
Identity = 43/107 (40.19%), Postives = 69/107 (64.49%), Query Frame = 0 

Query: 1   MEDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           +ED++LVE LL +   G W++NNGTF+ GYLQ LE++L+EK+PRC L     I+ +++ L
Sbjct: 20  LEDSKLVECLLDITNSGKWKANNGTFKHGYLQQLEKLLNEKIPRCGLKAQPHIDSRIKIL 79

Query: 61  KKQYNAVSEMLGSLKRSFDL---DRKIVTESPLNQDGMDEEPVEQSI 103
           KKQ++A+SEMLG     F+    D+ IV +  +  + +   P  + +
Sbjct: 80  KKQFHAISEMLGHCGGGFEWNAEDKCIVADKNVYDEWVKSHPTAKGL 126

[Close]
BLAST of Cla97C05G093630 vs. TrEMBL
Match: tr|A0A2H3X2M0|A0A2H3X2M0_PHODC (uncharacterized protein LOC103697309 OS=Phoenix dactylifera OX=42345 GN=LOC103697309 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 2   EDAELVEALLYLVEI-GWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLK 61
           EDA+LVE L+ +V   GW+ +NGTFRPG+ QHLE+++ +K+P C L  N+ IE  V+ LK
Sbjct: 30  EDAKLVECLIEVVNAGGWKGDNGTFRPGFHQHLERMMEKKLPGCGLRGNSHIENHVKLLK 89

Query: 62  KQYNAVSEMLG 71
           KQYNA++EM G
Sbjct: 90  KQYNAIAEMFG 100

[Close]
BLAST of Cla97C05G093630 vs. TrEMBL
Match: tr|A0A2H3XZQ8|A0A2H3XZQ8_PHODC (uncharacterized protein LOC103708116 OS=Phoenix dactylifera OX=42345 GN=LOC103708116 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.8e-12
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 0 

Query: 2   EDAELVEALLYLVEI-GWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLK 61
           EDA+LVE L+ +V   GW+ +NGTFRPG+ QHLE+++ +K+P C L  N  IE  V+ LK
Sbjct: 246 EDAKLVECLIEVVNASGWKGDNGTFRPGFHQHLERMMEKKLPGCGLRGNPHIENYVKLLK 305

Query: 62  KQYNAVSEMLG 71
           KQYNA++E+LG
Sbjct: 306 KQYNAIAEILG 316

The following BLAST results are available for this feature:
BLAST of Cla97C05G093630 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_017696816.14.2e-1453.85PREDICTED: uncharacterized protein LOC103701179 [Phoenix dactylifera][more]
XP_024022021.11.6e-1343.14uncharacterized protein LOC112091787 [Morus notabilis][more]
XP_016165039.14.7e-1344.00uncharacterized protein LOC107607624 [Arachis ipaensis][more]
XP_016172752.14.7e-1344.00uncharacterized protein LOC107615161 [Arachis ipaensis][more]
XP_025609357.14.7e-1344.00uncharacterized protein LOC112702515 [Arachis hypogaea] >XP_025609358.1 uncharac... [more]
BLAST of Cla97C05G093630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2H3ZL06|A0A2H3ZL06_PHODC2.8e-1453.85uncharacterized protein LOC103701179 OS=Phoenix dactylifera OX=42345 GN=LOC10370... [more]
tr|A0A2P5D960|A0A2P5D960_PARAD5.3e-1340.19Myb/SANT-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanW... [more]
tr|A0A2P5FL77|A0A2P5FL77_9ROSA6.9e-1340.19Myb/SANT-like domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x... [more]
tr|A0A2H3X2M0|A0A2H3X2M0_PHODC2.6e-1254.93uncharacterized protein LOC103697309 OS=Phoenix dactylifera OX=42345 GN=LOC10369... [more]
tr|A0A2H3XZQ8|A0A2H3XZQ8_PHODC5.8e-1254.93uncharacterized protein LOC103708116 OS=Phoenix dactylifera OX=42345 GN=LOC10370... [more]
BLAST of Cla97C05G093630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G093630 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR024752Myb/SANT-like_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G093630.1Cla97C05G093630.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..117
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 2..84
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 2..84
IPR024752Myb/SANT-like domainPFAMPF12776Myb_DNA-bind_3coord: 3..84
e-value: 4.3E-5
score: 24.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G093630Cla013226Watermelon (97103) v1wmwmbB206
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G093630Silver-seed gourdcarwmbB0503
Cla97C05G093630Silver-seed gourdcarwmbB0795
Cla97C05G093630Cucumber (Gy14) v2cgybwmbB201
Cla97C05G093630Cucumber (Gy14) v2cgybwmbB209
Cla97C05G093630Cucumber (Gy14) v1cgywmbB004
Cla97C05G093630Cucurbita maxima (Rimu)cmawmbB264
Cla97C05G093630Cucurbita maxima (Rimu)cmawmbB473
Cla97C05G093630Cucurbita moschata (Rifu)cmowmbB244
Cla97C05G093630Cucurbita moschata (Rifu)cmowmbB454
Cla97C05G093630Wild cucumber (PI 183967)cpiwmbB213
Cla97C05G093630Wild cucumber (PI 183967)cpiwmbB224
Cla97C05G093630Cucumber (Chinese Long) v3cucwmbB212
Cla97C05G093630Cucumber (Chinese Long) v3cucwmbB220
Cla97C05G093630Cucumber (Chinese Long) v2cuwmbB209
Cla97C05G093630Cucumber (Chinese Long) v2cuwmbB218
Cla97C05G093630Bottle gourd (USVL1VR-Ls)lsiwmbB329
Cla97C05G093630Melon (DHL92) v3.6.1medwmbB424
Cla97C05G093630Melon (DHL92) v3.6.1medwmbB437
Cla97C05G093630Melon (DHL92) v3.5.1mewmbB434
Cla97C05G093630Melon (DHL92) v3.5.1mewmbB444
Cla97C05G093630Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G093630Wax gourdwgowmbB194