Cla013226 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013226
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Retrotransposon protein (AHRD V1 -- E5GBB2_CUCME)
Location	Chr5 : 13169088 .. 13169938 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGTTAGTCGGGGTTCGGCTAGAACAAGGAGTTCAAATGTGTCTAGGTCAAGAGGGAGATTTTCGATTTTTGGGTTCAGGTAAGATTCTAGAAAAAAATTTATCGGTACGTGTTAAATAGGTAAATATTAATAATTTGTACGTGTATCAATGCAAAGTCATCCCAGTGCGAAGGGGATGTGAAACAAGTCATTCCCCCATTACAATGACCTTTCCACCGTATTTGGGAAAGATAGAACAGTAGGACAATCAAGTGAGGACCCACATGTGATGGCGACGAATGCATTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

mRNA sequence

ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

Coding sequence (CDS)

ATGGAGGACGCTGAGTTGGTGGAAGCCCTATTGTATTTGGTGGAGATCGGTTGGAGGTCCAACAATGGGACATTTCGACCAGGATACCTACAGCACTTGGAGCAAATTCTGCATGAGAAAGTGCCCAGGTGCGCACTGAATAAGAACACCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAATGCAGTATCAGAGATGTTAGGGAGTTTGAAGAGGAGTTTCGACTTGGATCGCAAGATTGTCACAGAATCACCATTAAATCAGGATGGAATGGATGAAGAGCCAGTAGAGCAATCTATAGGTAGAGCGACACCTGCGGAGTCATCTCGATGCAGCAAGAGGAAAAGGCCATCATTCCAATCTGAAATGATCGACATCATGAGATTGGCTATTGAAATGCAAAACACACACATGGGTAGACTTGCATCGTGCCAAAAGGAGAAGTATGAGCTGGAGTTCAAGCGTCGAAAGGAAGTAGTAAACACCATATACAACATTGATGGCTTGAATGAGGATGACCAGGTCACCCTTATTGACCTCCTTATCACAGACATTTAG

Protein sequence

MEDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKKQYNAVSEMLGSLKRSFDLDRKIVTESPLNQDGMDEEPVEQSIGRATPAESSRCSKRKRPSFQSEMIDIMRLAIEMQNTHMGRLASCQKEKYELEFKRRKEVVNTIYNIDGLNEDDQVTLIDLLITDI

Homology

[Close]

BLAST of Cla013226 vs. TrEMBL
Match: A0A072UYX1_MEDTR (Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.0e-10
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1


Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA LV+ LL LV+ GW+++ GTF+PGY + LE+ L +K+P C L  N  IE +V+ LK 
Sbjct: 21  EDAVLVQGLLQLVDDGWKADAGTFKPGYTKVLERYLLKKIPDCTLKANPHIESRVKRLKS 80

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
            Y+A+ +MLG     F   D  + IV E  + +      P
Sbjct: 81  HYSAIRDMLGPSASGFGWNDATKTIVVEKEVYRQWCKSHP 120

[Close]

BLAST of Cla013226 vs. TrEMBL
Match: I3SNR9_MEDTR (Uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1


Query: 2  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
          ED  LVE LL LV+ GW+++  +F+PGY + LE+ +H K P C L     IE +V+ LK+
Sbjct: 21 EDGVLVEGLLKLVDEGWKADANSFKPGYTKALEKYIHNKFPGCTLKATPHIESRVKLLKR 80

Query: 62 QYNAVSEMLGSLKRSFDLD 80
          QY+A+ +MLG     F  D
Sbjct: 81 QYSAIKDMLGPGASGFGWD 99

[Close]

BLAST of Cla013226 vs. TrEMBL
Match: A0A072TE22_MEDTR (Myb/SANT-like DNA-binding domain protein (Fragment) OS=Medicago truncatula GN=MTR_0697s0010 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.5e-09
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 2  EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
          ED  LVE LL LV+ GW+++  +F+PGY + LE+ +H K P C L     IE +V+  K+
Sbjct: 21 EDGVLVEGLLKLVDEGWKADANSFKPGYTKALEKYIHNKFPGCTLKATPHIESRVKLFKR 80

Query: 62 QYNAVSEMLG 71
          QY+A+ +MLG
Sbjct: 81 QYSAIKDMLG 90

[Close]

BLAST of Cla013226 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-08
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 1


Query: 2   EDAELVEALLYLVEIG-WRSNNGTFRPGYLQHLEQILHEKVPRCALNKNTIECKVRSLKK 61
           E+A LVE L+ LV  G WRS+NGTFRPGYL  L +++  K+P   ++ +TI+ +++ +K+
Sbjct: 371 EEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIHASTIDSRIKLMKR 430

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQD 92
            ++A++EM G     F   D  + IV E  +  D
Sbjct: 431 MFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 464

[Close]

BLAST of Cla013226 vs. TrEMBL
Match: E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 17  GWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKKQYNAVSEMLGSLKRS 76
           GW+S+NGTFRPGYL  L +++ EK+  C +   T I+C++++LK+ + A++EMLG     
Sbjct: 349 GWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSG 408

Query: 77  F---DLDRKIVTESPLNQDGMDEEPVEQSI 103
           F   D ++ IV E  L  + +   P  + +
Sbjct: 409 FGWNDEEKCIVAEKELFDNWVRSPPAAKGL 438

[Close]

BLAST of Cla013226 vs. NCBI nr
Match: gi|1021535931|ref|XP_016165039.1| (PREDICTED: uncharacterized protein LOC107607624 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYGKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGNGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]

BLAST of Cla013226 vs. NCBI nr
Match: gi|1021563048|ref|XP_016172752.1| (PREDICTED: uncharacterized protein LOC107615161 [Arachis ipaensis])

HSP 1 Score: 84.3 bits (207), Expect = 2.4e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYGKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGNGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]

BLAST of Cla013226 vs. NCBI nr
Match: gi|672116419|ref|XP_008781374.1| (PREDICTED: uncharacterized protein LOC103701179 [Phoenix dactylifera])

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 1   MEDAELVEALLYLV-EIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           MEDA+L+EAL+ LV   GWR +NGTFR GYLQ LE+++ EK+P C L     IE +V+ L
Sbjct: 25  MEDAKLIEALVELVTRRGWRGDNGTFRSGYLQQLERLMEEKLPECGLKATPYIESQVKLL 84

Query: 61  KKQYNAVSEMLGSLKRSFDLD 80
           KKQYNA+++MLG     F  D
Sbjct: 85  KKQYNAIAKMLGPNCSGFGWD 105

[Close]

BLAST of Cla013226 vs. NCBI nr
Match: gi|1012110960|ref|XP_015959963.1| (PREDICTED: uncharacterized protein LOC107483869 [Arachis duranensis])

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-13
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1


Query: 2   EDAELVEALLYLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSLKK 61
           EDA+LVE L+ L    W+ +NGTF+ GY +HLE++LHEK+P C L  N  IE +V+ LK+
Sbjct: 20  EDAKLVECLVELATTSWKCDNGTFKSGYGKHLEKMLHEKIPGCDLKANPHIESRVKLLKR 79

Query: 62  QYNAVSEMLGSLKRSF---DLDRKIVTESPLNQDGMDEEP 98
           QY A+ EM+G+    F   D D+ IV E  +  +     P
Sbjct: 80  QYFAIVEMMGTAGSGFGWNDKDKMIVVERQIFNEWKSSHP 119

[Close]

BLAST of Cla013226 vs. NCBI nr
Match: gi|672172947|ref|XP_008806587.1| (PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera])

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 1   MEDAELVEALL-YLVEIGWRSNNGTFRPGYLQHLEQILHEKVPRCALNKNT-IECKVRSL 60
           +EDA+LVEAL+ ++   GWR +NGTFR GYLQ LE+++ EK+  C L     IE +V+ L
Sbjct: 400 VEDAKLVEALVEFVTRGGWRGDNGTFRSGYLQQLERLIEEKLSGCGLKATPHIESRVKLL 459

Query: 61  KKQYNAVSEMLGSLKRSFDLDRKIVTESPLNQDGMDEEP 98
           KKQYNA++EMLG     F  D       P N  GM  +P
Sbjct: 460 KKQYNAIAEMLGPNCSGFGWDDINKCSHP-NAQGMRNKP 497

The following BLAST results are available for this feature:

BLAST of Cla013226 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A072UYX1_MEDTR	1.0e-10	41.00	Myb/SANT-like DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g075160 ...	[more]
I3SNR9_MEDTR	1.9e-09	44.30	Uncharacterized protein OS=Medicago truncatula PE=2 SV=1	[more]
A0A072TE22_MEDTR	9.5e-09	45.71	Myb/SANT-like DNA-binding domain protein (Fragment) OS=Medicago truncatula GN=MT...	[more]
E5GCB5_CUCME	2.1e-08	39.36	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB2_CUCME	3.6e-08	36.67	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla013226 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1021535931\|ref\|XP_016165039.1\|	2.4e-13	44.00	PREDICTED: uncharacterized protein LOC107607624 [Arachis ipaensis]	[more]
gi\|1021563048\|ref\|XP_016172752.1\|	2.4e-13	44.00	PREDICTED: uncharacterized protein LOC107615161 [Arachis ipaensis]	[more]
gi\|672116419\|ref\|XP_008781374.1\|	3.1e-13	54.32	PREDICTED: uncharacterized protein LOC103701179 [Phoenix dactylifera]	[more]
gi\|1012110960\|ref\|XP_015959963.1\|	3.1e-13	44.00	PREDICTED: uncharacterized protein LOC107483869 [Arachis duranensis]	[more]
gi\|672172947\|ref\|XP_008806587.1\|	1.6e-12	47.47	PREDICTED: uncharacterized protein LOC103719223 [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013226	Cla013226.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31704	FAMILY NOT NAMED	coord: 1..83 score: 3.2
None	No IPR available	PANTHER	PTHR31704:SF16	SUBFAMILY NOT NAMED	coord: 1..83 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013226	Cla97C05G093630	Watermelon (97103) v2	wmwmbB206

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013226	Melon (DHL92) v3.5.1	mewmB461
Cla013226	Melon (DHL92) v3.5.1	mewmB474
Cla013226	Watermelon (Charleston Gray)	wcgwmB286
Cla013226	Cucumber (Chinese Long) v2	cuwmB239
Cla013226	Cucumber (Chinese Long) v2	cuwmB245
Cla013226	Cucurbita pepo (Zucchini)	cpewmB568
Cla013226	Cucurbita pepo (Zucchini)	cpewmB614
Cla013226	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013226	Cucumber (Gy14) v2	cgybwmB223
Cla013226	Cucumber (Gy14) v2	cgybwmB232
Cla013226	Melon (DHL92) v3.6.1	medwmB448
Cla013226	Melon (DHL92) v3.6.1	medwmB462
Cla013226	Silver-seed gourd	carwmB0476
Cla013226	Silver-seed gourd	carwmB0760
Cla013226	Cucumber (Chinese Long) v3	cucwmB245
Cla013226	Cucumber (Chinese Long) v3	cucwmB254
Cla013226	Wax gourd	wgowmB215
Cla013226	Cucurbita maxima (Rimu)	cmawmB243
Cla013226	Cucurbita maxima (Rimu)	cmawmB434
Cla013226	Cucurbita moschata (Rifu)	cmowmB232
Cla013226	Cucurbita moschata (Rifu)	cmowmB427