Cla97C05G088680 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G088680
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Protein SMG9
Location	Cla97Chr05 : 6802305 .. 6805189 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTTCAACCGGTGCTAATTCTTCTTCCAATTCTTCGCCTGCTCCTCCTCCCCCCAAAATCCTTCTAGCAAAGCCTGGCCTCGTCACCGGCGGACCAATTAACTCTAAGATTGGACGCGGCGCCGGCGCCGACGATGAAGCAGCATCGATTCGGTCCCGTCTCCCTTCACTTGGATCCCTAAATCTTCTCTCTGATTCCTGGGATCTCCACATTGACCGTTTCCTCCCTGTAAACAATCTCACACTCCCTCATTTTTCCTTCCGCGTCTTCTTTTATGGAAATTGAAAACTGTTTAAATGAGATACGTTTATTGGTGGAGTTTATTCGAGGTTTTTGTTGATTGATGTACTGCTCCAGTGAGTCAATGTTTACACTCCCTTTAAAGTAGAAACAAAAGCAGTGTACGTTTTACGGTTTAATCAGCTGCAGAAATGAGAAATGGTCGTTTTTTTGTTTGTTTTGTTTTGTTTTGTTTTGATGTTAGAGTTGGATCAGTTGGTTTAAAATCACTTCACCACCTTCCAGTTCAGGAGAATTCTTCTCTCCCGGGTTTCTCTTGCAGTTTTTAATGGGTTGGGGCGGGATTTGAGTTTTGGCGGGCAGTTCGATTAACATTTGTCTTGCTCTTCCTCGCCAGTTTTTGACTGAGAATACGGAGTTCAAGGTGGTGGGGATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATTATGAATGAGATTTATGGCTACGATGGAAGTTCTCCAGGTGAGATATATGTGAGGCTACGTTTTTAATTTGTTTGTTCTGTTTTATTCACTTCTAGATTTATTTGATCATCTTATTATGTTTAGTTCTTTTGCCTCTTCTCCAAGTTCAGAATTGTTTGCCTCTCGATTGCTTAGGTGTGTTTTCCTATTGATTTTACTGTTTCTGCGTGCTTGCCCTCACTTACACTGGTCATCCCGTGTCCAGACCAAGCTCTAGAAAGTTAATATCCCTTAAGAATGTTAGGTTTTTTGTATTGAAAAAGAAGAAACATCTTGACTTTGTCAAGAGATCGTTTATGGTTTTTTGAAAGCTGATTATGGAGGATTTGGATCTTATTGTTTGAAGACATCATTTTTGCATCTAAGATATTGGATATATATCTGGAATAATTTGAAGTTAGTCTAGCTCTGAGCCGGATTAGTTGCTGTTCTTTTATGAAGGAGGTCCTTCTCCCTGTCATCCTGGGGGGCAGATGAAAGATTTTGTAACAAGCATGTCTTTTTACTATTATTTCAATATTTAGTCATAGGAAAATAGAGCAATTTTAAGGGGCGAAAGGTTCCTTGATTGGAGAAATGGAGCTTGGTACATGCTAACACCTTTTTGTGGGCAAGAATTTTTTTTTTTTTTCTAACTACTTTCAGTGCTTTTTCTTTTTTTCTCAATGATCAAAGTCCTTGCTTGTAACTTTTTGGTTCTAGGCCATCTTTTTGTAGAACCTTCTCTTTTAACTTCTTCAAAAATAAATAAATAGAATATTTCAAATTTGATGTTCTTCCTATTATTTTTTTCACTTATTAAGGCTACAACCTTATGTGCTTTAATGGCTAAATATTAGTGTAATATCTGTTTCTTATCATGGACAAAAGCCTTTGTGTTCCTATTTGTCCTTTCCATTAATATTGGTGTCATACTTTTGTACATATTGCAGGTATGTTACCACCATTTCCAATACTATCTGAAGATGTTAGAGCAATGGCTAGGCATTGTACATTGGGAATTGAGCCCCGAATTTCTTCTGAGAGGATCATACTTCTGGACACTCAGGTGTTTTCCTAGTGAATTTTCTTTTTAATGTTAGTTGAAAACTGCACCTGCACTTGATTCACTTTCCATTTTGATGCTTCCCTTCGGGTTCTTATTTAAATATTTTTTGATCACCCTTTTATTTTGTCACCATTAGTAGGAGATCCTTTATCTTATGATGTGCTCTGCTGTGTCCCCTTCGTTGGTGTGTGCCTGTGTATATTGTTGGCCTTCTTCCGTTCTTTTGTTGATTTTGATTAAAGTTAGTTCTCGTATTAAAAAGTGTTAGCTTAATTCTTTTGGATTAGAGCCCCTTTCTGCGTTTGGGTGTGAGGGCTGCTTGTTTTTTGTTTGCCTTTGTATGTGTGTGCATATATATATATTTTAAACAAAGTACAAAATTTTTTATTGAAAAAAATGATAAGAGACTAATTGTTGAAGTCGAAGGGATACAAGCTCCAAAAGGAGTGAAATGCACAAGCTAGTGAAGGATATGTGAGAAACCTTATTCCCCTTGTATATCCTTTCATCTATGTCTTCTTATCAAAAGGGGTCTGAAAAGCAAGATTTGAACAGTAATACAATACAACTATCAAACTGGAAAGACATGATTTATATTGAGTGGGCTCGTGTTCATCTTTTTATTGGATGCCTGACTAATGGTGATGACGCATCTATCTTCTGAATTCATCATGTGAAATTTGTATAGTATTATATTTTTGTTTGTTACTTACAGTTTTGCATGATAATTTGGCAATTGCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCCGGTGGTTCATCCACCGTTTCAGTTATTAGTGGTGAATCTTTATCAGCCGAATTGGCTCATGAACTTATGAGTATCCAGGTAATTCCAAAGAGAGGCTCTTTTTTGCTTGTGTTTTGTGGGGGTTTGAGGGATGAGTTGGAATCTGAAGAGAGGTTTAGAGTTCCACTACACGATTATATGAAAAATGCAATTATGGGGTTAGGATTCCTTTTGCTTTGTGGCTTATGGCATCAAAATAGTATCTTATAAATTTCTTCCCATTGTTCTGCAAGGATTCTTTTAGCTGGGCATTCTTCTAG

mRNA sequence

ATGGCGGGTTCAACCGGTGCTAATTCTTCTTCCAATTCTTCGCCTGCTCCTCCTCCCCCCAAAATCCTTCTAGCAAAGCCTGGCCTCGTCACCGGCGGACCAATTAACTCTAAGATTGGACGCGGCGCCGGCGCCGACGATGAAGCAGCATCGATTCGGTCCCGTCTCCCTTCACTTGGATCCCTAAATCTTCTCTCTGATTCCTGGGATCTCCACATTGACCGTTTCCTCCCTTTTTTGACTGAGAATACGGAGTTCAAGGTGGTGGGGATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATTATGAATGAGATTTATGGCTACGATGGAAGTTCTCCAGGTATGTTACCACCATTTCCAATACTATCTGAAGATGTTAGAGCAATGGCTAGGCATTGTACATTGGGAATTGAGCCCCGAATTTCTTCTGAGAGGATCATACTTCTGGACACTCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCCGGTGGTTCATCCACCGTTTCAGTTATTAGTGGTGAATCTTTATCAGCCGAATTGGCTCATGAACTTATGAGTATCCAGGATTCTTTTAGCTGGGCATTCTTCTAG

Coding sequence (CDS)

ATGGCGGGTTCAACCGGTGCTAATTCTTCTTCCAATTCTTCGCCTGCTCCTCCTCCCCCCAAAATCCTTCTAGCAAAGCCTGGCCTCGTCACCGGCGGACCAATTAACTCTAAGATTGGACGCGGCGCCGGCGCCGACGATGAAGCAGCATCGATTCGGTCCCGTCTCCCTTCACTTGGATCCCTAAATCTTCTCTCTGATTCCTGGGATCTCCACATTGACCGTTTCCTCCCTTTTTTGACTGAGAATACGGAGTTCAAGGTGGTGGGGATAATTGGTCCACCGGGAGTTGGTAAGTCGACGATTATGAATGAGATTTATGGCTACGATGGAAGTTCTCCAGGTATGTTACCACCATTTCCAATACTATCTGAAGATGTTAGAGCAATGGCTAGGCATTGTACATTGGGAATTGAGCCCCGAATTTCTTCTGAGAGGATCATACTTCTGGACACTCAGCCTGTGTTCAGTCCTTCTGTTTTAGCTGAAATTATGAGACCCGGTGGTTCATCCACCGTTTCAGTTATTAGTGGTGAATCTTTATCAGCCGAATTGGCTCATGAACTTATGAGTATCCAGGATTCTTTTAGCTGGGCATTCTTCTAG

Protein sequence

MAGSTGANSSSNSSPAPPPPKILLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLGSLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPFPILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGESLSAELAHELMSIQDSFSWAFF

Homology

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BLAST of Cla97C05G088680 vs. NCBI nr
Match: XP_008439030.1 (PREDICTED: protein SMG9-like isoform X1 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 3.3e-89
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPI+SKIGRG GADDEAASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. NCBI nr
Match: XP_016899123.1 (PREDICTED: protein SMG9-like isoform X2 [Cucumis melo])

HSP 1 Score: 337.4 bits (864), Expect = 3.3e-89
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPI+SKIGRG GADDEAASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. NCBI nr
Match: XP_004147641.1 (PREDICTED: protein SMG9-like [Cucumis sativus] >KGN57223.1 hypothetical protein Csa_3G171800 [Cucumis sativus])

HSP 1 Score: 336.7 bits (862), Expect = 5.6e-89
Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPINSKIGRGAGADDE ASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPINSKIGRGAGADDEPASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
            SAELAHELMSIQ
Sbjct: 181 PSAELAHELMSIQ 193

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BLAST of Cla97C05G088680 vs. NCBI nr
Match: XP_022935704.1 (protein SMG9-like [Cucurbita moschata])

HSP 1 Score: 326.6 bits (836), Expect = 5.8e-86
Identity = 182/193 (94.30%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTG  XXXXXXXXXXXXXX  AKPGLVTGG I+SKIGRGAGADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGXXXXXXXXXXXXXXXXXXAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSST+SVISGES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. NCBI nr
Match: XP_022972052.1 (protein SMG9-like [Cucurbita maxima])

HSP 1 Score: 326.6 bits (836), Expect = 5.8e-86
Identity = 182/193 (94.30%), Postives = 186/193 (96.37%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTG  XXXXXXXXXXXXXX  AKPGLVTGG I+SKIGRGAGADDE+ASIRSRLPSLG
Sbjct: 1   MAGSTGXXXXXXXXXXXXXXXXXXAKPGLVTGGAISSKIGRGAGADDESASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWD HIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYG+DGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDFHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGFDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSST+SVISGES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTISVISGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. TrEMBL
Match: tr|A0A1S3AYF2|A0A1S3AYF2_CUCME (protein SMG9-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.2e-89
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPI+SKIGRG GADDEAASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. TrEMBL
Match: tr|A0A1S4DT40|A0A1S4DT40_CUCME (protein SMG9-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.2e-89
Identity = 188/193 (97.41%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPI+SKIGRG GADDEAASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPISSKIGRGPGADDEAASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. TrEMBL
Match: tr|A0A0A0L618|A0A0A0L618_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171800 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 3.7e-89
Identity = 188/193 (97.41%), Postives = 189/193 (97.93%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTGANXXXXXXXXXXXXXXLLAKPGLV GGPINSKIGRGAGADDE ASIRSRLPSLG
Sbjct: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVPGGPINSKIGRGAGADDEPASIRSRLPSLG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF
Sbjct: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
           PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRP GSSTVSVI+GES
Sbjct: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPDGSSTVSVINGES 180

Query: 181 LSAELAHELMSIQ 194
            SAELAHELMSIQ
Sbjct: 181 PSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. TrEMBL
Match: tr|A0A2I4EH91|A0A2I4EH91_9ROSI (protein SMG9-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 1.7e-78
Identity = 161/193 (83.42%), Postives = 175/193 (90.67%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTG  XXXXXXXXXXXX  LLAKPGLVTGGP+  K GRG  ADDE AS+RSRLP +G
Sbjct: 1   MAGSTGGTXXXXXXXXXXXXKILLAKPGLVTGGPVAGKFGRGGSADDETASLRSRLPPIG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           SLNLLSDSWD HIDRFLPFLTENT+F VVG+IGP GVGKSTIMNE+YG+D SSPGMLPPF
Sbjct: 61  SLNLLSDSWDFHIDRFLPFLTENTDFTVVGVIGPTGVGKSTIMNELYGFDASSPGMLPPF 120

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSVISGES 180
            I SED+RAMA+HCT+GIEPRIS+ERIILLDTQP+FSPSVLAEIMRP GSST+SV+SGES
Sbjct: 121 AIQSEDIRAMAKHCTMGIEPRISAERIILLDTQPLFSPSVLAEIMRPDGSSTISVLSGES 180

Query: 181 LSAELAHELMSIQ 194
           LSAELAHELMSIQ
Sbjct: 181 LSAELAHELMSIQ 193

[Close]

BLAST of Cla97C05G088680 vs. TrEMBL
Match: tr|A0A2I4EH73|A0A2I4EH73_9ROSI (protein SMG9-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.2e-76
Identity = 161/198 (81.31%), Postives = 175/198 (88.38%), Query Frame = 0


Query: 1   MAGSTGANXXXXXXXXXXXXXXLLAKPGLVTGGPINSKIGRGAGADDEAASIRSRLPSLG 60
           MAGSTG  XXXXXXXXXXXX  LLAKPGLVTGGP+  K GRG  ADDE AS+RSRLP +G
Sbjct: 1   MAGSTGGTXXXXXXXXXXXXKILLAKPGLVTGGPVAGKFGRGGSADDETASLRSRLPPIG 60

Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSP-----G 120
           SLNLLSDSWD HIDRFLPFLTENT+F VVG+IGP GVGKSTIMNE+YG+D SSP     G
Sbjct: 61  SLNLLSDSWDFHIDRFLPFLTENTDFTVVGVIGPTGVGKSTIMNELYGFDASSPVHWLSG 120

Query: 121 MLPPFPILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIMRPGGSSTVSV 180
           MLPPF I SED+RAMA+HCT+GIEPRIS+ERIILLDTQP+FSPSVLAEIMRP GSST+SV
Sbjct: 121 MLPPFAIQSEDIRAMAKHCTMGIEPRISAERIILLDTQPLFSPSVLAEIMRPDGSSTISV 180

Query: 181 ISGESLSAELAHELMSIQ 194
           +SGESLSAELAHELMSIQ
Sbjct: 181 LSGESLSAELAHELMSIQ 198

[Close]

BLAST of Cla97C05G088680 vs. Swiss-Prot
Match: sp|Q05AW9|SMG9_XENLA (Protein SMG9 OS=Xenopus laevis OX=8355 GN=smg9 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 65  LSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPFPILS 124
           L D +    D  + FL + T+  VVG++G  G GKST+M+ +             F + S
Sbjct: 172 LVDEYMNWCDSAIEFLLDQTDVLVVGVLGLQGTGKSTLMSLLSANSPDDDQRSYVFRMQS 231

Query: 125 EDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIM 166
           ++VR  A + T GI+  IS ERII LDTQP+ SP++L  ++
Sbjct: 232 QEVRERAGNQTSGIDFFISQERIIFLDTQPILSPAILDHLI 272

[Close]

BLAST of Cla97C05G088680 vs. Swiss-Prot
Match: sp|B5DDX6|SMG9_XENTR (Protein SMG9 OS=Xenopus tropicalis OX=8364 GN=smg9 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 50/144 (34.72%), Postives = 71/144 (49.31%), Query Frame = 0


Query: 34  PINSKIGRGAGADDEAASIRSRL-PSLGSLNLLS-----------DSWDLHIDRFLPFLT 93
           P+     RG GA   AAS    + P +G   LL            D +    D  + FL 
Sbjct: 132 PVYQIQNRGMGA---AASASGNVDPVVGQAKLLPPQKMKHSIKLVDEYMNWCDSAIEFLL 191

Query: 94  ENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPFPILSEDVRAMARHCTLGIEPR 153
           + T+  VVGI+G  G GKST+M+ +             F + S++VR  A + T GI+  
Sbjct: 192 DQTDVLVVGILGLQGTGKSTLMSLLSANSPDDDQRSYVFRMQSQEVRERAGNQTSGIDFF 251

Query: 154 ISSERIILLDTQPVFSPSVLAEIM 166
           IS ERII LDTQP+ SP++L  ++
Sbjct: 252 ISQERIIFLDTQPILSPAILDHLI 272

[Close]

BLAST of Cla97C05G088680 vs. Swiss-Prot
Match: sp|B5X165|SMG9_SALSA (Protein SMG9 OS=Salmo salar OX=8030 GN=smg9 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08
Identity = 34/105 (32.38%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           S+ L+ D  +   D  + +L + T+  VVG+IG  G GKSTIM+ +             F
Sbjct: 166 SIKLVDDQMN-WCDSAMEYLRDQTDMLVVGVIGLQGTGKSTIMSLLSANAPEEDQRGYVF 225

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIM 166
              +++++    + + GI+  I+ ER+I LDTQP+ SPS+L  ++
Sbjct: 226 RAQTQEIKERGGNQSTGIDFYITQERVIFLDTQPILSPSILDHLI 269

[Close]

BLAST of Cla97C05G088680 vs. Swiss-Prot
Match: sp|Q2YDD2|SMG9_BOVIN (Protein SMG9 OS=Bos taurus OX=9913 GN=SMG9 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           S+ L+ D  +   D  + +L + T+  VVG++G  G GKS +M+ +             F
Sbjct: 180 SIKLVDDQMN-WCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRAYVF 239

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIM 166
              S +++    + T GI+  I+ ERI+ LDTQP+ SPS+L  ++
Sbjct: 240 RAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLI 283

[Close]

BLAST of Cla97C05G088680 vs. Swiss-Prot
Match: sp|Q9H0W8|SMG9_HUMAN (Protein SMG9 OS=Homo sapiens OX=9606 GN=SMG9 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-08
Identity = 33/105 (31.43%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 61  SLNLLSDSWDLHIDRFLPFLTENTEFKVVGIIGPPGVGKSTIMNEIYGYDGSSPGMLPPF 120
           S+ L+ D  +   D  + +L + T+  VVG++G  G GKS +M+ +             F
Sbjct: 180 SIKLVDDQMN-WCDSAIEYLLDQTDVLVVGVLGLQGTGKSMVMSLLSANTPEEDQRTYVF 239

Query: 121 PILSEDVRAMARHCTLGIEPRISSERIILLDTQPVFSPSVLAEIM 166
              S +++    + T GI+  I+ ERI+ LDTQP+ SPS+L  ++
Sbjct: 240 RAQSAEMKERGGNQTSGIDFFITQERIVFLDTQPILSPSILDHLI 283

The following BLAST results are available for this feature:

BLAST of Cla97C05G088680 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439030.1	3.3e-89	97.41	PREDICTED: protein SMG9-like isoform X1 [Cucumis melo]	[more]
XP_016899123.1	3.3e-89	97.41	PREDICTED: protein SMG9-like isoform X2 [Cucumis melo]	[more]
XP_004147641.1	5.6e-89	97.41	PREDICTED: protein SMG9-like [Cucumis sativus] >KGN57223.1 hypothetical protein ...	[more]
XP_022935704.1	5.8e-86	94.30	protein SMG9-like [Cucurbita moschata]	[more]
XP_022972052.1	5.8e-86	94.30	protein SMG9-like [Cucurbita maxima]	[more]

BLAST of Cla97C05G088680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AYF2\|A0A1S3AYF2_CUCME	2.2e-89	97.41	protein SMG9-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1	[more]
tr\|A0A1S4DT40\|A0A1S4DT40_CUCME	2.2e-89	97.41	protein SMG9-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483940 PE=4 SV=1	[more]
tr\|A0A0A0L618\|A0A0A0L618_CUCSA	3.7e-89	97.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171800 PE=4 SV=1	[more]
tr\|A0A2I4EH91\|A0A2I4EH91_9ROSI	1.7e-78	83.42	protein SMG9-like isoform X2 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1	[more]
tr\|A0A2I4EH73\|A0A2I4EH73_9ROSI	1.2e-76	81.31	protein SMG9-like isoform X1 OS=Juglans regia OX=51240 GN=LOC108989565 PE=4 SV=1	[more]

BLAST of Cla97C05G088680 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q05AW9\|SMG9_XENLA	2.1e-10	37.62	Protein SMG9 OS=Xenopus laevis OX=8355 GN=smg9 PE=2 SV=1	[more]
sp\|B5DDX6\|SMG9_XENTR	2.1e-10	34.72	Protein SMG9 OS=Xenopus tropicalis OX=8364 GN=smg9 PE=2 SV=1	[more]
sp\|B5X165\|SMG9_SALSA	1.9e-08	32.38	Protein SMG9 OS=Salmo salar OX=8030 GN=smg9 PE=2 SV=1	[more]
sp\|Q2YDD2\|SMG9_BOVIN	9.6e-08	31.43	Protein SMG9 OS=Bos taurus OX=9913 GN=SMG9 PE=2 SV=1	[more]
sp\|Q9H0W8\|SMG9_HUMAN	9.6e-08	31.43	Protein SMG9 OS=Homo sapiens OX=9606 GN=SMG9 PE=1 SV=1	[more]

BLAST of Cla97C05G088680 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase
IPR039177	SMG9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G088680.1	Cla97C05G088680.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.40.50.300		coord: 48..155 e-value: 1.5E-5 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR039177	Protein SMG9	PANTHER	PTHR14270	UNCHARACTERIZED	coord: 46..193
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 87..192
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 78..112

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G088680	Cla021846	Watermelon (97103) v1	wmwmbB206
Cla97C05G088680	Csa3G171800	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G088680	MELO3C006767	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G088680	ClCG05G007010	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G088680	CSPI03G15520	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G088680	Cucsa.252030	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G088680	CmaCh06G015970	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G088680	CmoCh06G015920	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G088680	Lsi05G013710	Bottle gourd (USVL1VR-Ls)	lsiwmbB334
Cla97C05G088680	CsGy3G015570	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G088680	MELO3C006767.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G088680	Carg15518	Silver-seed gourd	carwmbB0720
Cla97C05G088680	CsaV3_3G015700	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G088680	Bhi01G000839	Wax gourd	wgowmbB178

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G088680	Silver-seed gourd	carwmbB0287
Cla97C05G088680	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G088680	Cucurbita moschata (Rifu)	cmowmbB243