Cla97C05G084740 (gene) Watermelon (97103) v2

Overview
NameCla97C05G084740
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionArp2/3 complex 34 kDa subunit
LocationCla97Chr05 : 3605589 .. 3606648 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATGCTTTCAGAGAGCTTCACCAGCTTTGAAGGAGATCCTCCTTAAACTGTACAGGTGAGAAACAAGTTCATTTGTTCTACATTTTAGGTAAACAGATGAGCATCTTGAAATCCATAAATTCTTTGAGAGAGAAATTTTGAGTTTGGATGAAACTTGGAGAAGGTTTTAGCCTTTAGGCATTAAATTGTATACGTTGTGCTGGAAGATAGCTCTTTTGATTTATTTTTTTTTTTTTTCGTTGGATGTGATTACAGTTTGGAGAAGCCCACTGAAATTGAACATCAATTGCATGAATTTGGTTCTGTTCAGTACCATATCAAGGTACGGTCATTCTCATTCATCTGGGATTATGCATGTTGAACATTTGAAATAATGTCCTAATGGCTTGCTGATTGTCTGGCAGTCTTCCATATCAGAAGCACACCACATTTACTTGTCAATTGCCACTCCATTGTTGTCACAAGGGGTTCTTTTATCTGATGGGCTCTCACCGTACACTGTCGAGATGGTAAAACAAATTTGCTCTCATGCTGTTGATATCATTGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGAATCGACTCTGCAAAAATTTTGCATGGGGAAGGTAGTTTCAAACTTGAACAGCTTCAGCCTTCATTAAATAGAAAACTAGTTGATGAAAAAAATTAGTGTCAATGCTACATAGTCTCAGAAAGAAAAGATAAAATTTTTACTACTCGATGATCTCTAGAAGATTGAGGTTAGGCTAATACTTCTCCTGTTGTGCCAAGAATCCCGATAACTATAGTATCAGATTGAAATGTGCGCCTTCTCATAACATTGATTGTTTGATGTGGTTCTACTTTTTGCAGAGTCAGAAAAGATCATTACAGACATTGCTGCTGTCCAAGCAGTGATCATAAGTTCTCAGCTGAAAGAAATGTTGAGAAATGTTAATTCACCGGCTCCATTTCAAGGAAACTCCAGACCCATCAAACTTGTATATCATCCAAGGGAACCATTCTTTGTCATCAAGCAGGCAAGTCAGAATTTATTTTGTTTCATTTAA

mRNA sequence

ATGGCATGCTTTCAGAGAGCTTCACCAGCTTTGAAGGAGATCCTCCTTAAACTGTACAGTTTGGAGAAGCCCACTGAAATTGAACATCAATTGCATGAATTTGGTTCTGTTCAGTACCATATCAAGTCTTCCATATCAGAAGCACACCACATTTACTTGTCAATTGCCACTCCATTGTTGTCACAAGGGGTTCTTTTATCTGATGGGCTCTCACCGTACACTGTCGAGATGGTAAAACAAATTTGCTCTCATGCTGTTGATATCATTGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGAATCGACTCTGCAAAAATTTTGCATGGGGAAGAGTCAGAAAAGATCATTACAGACATTGCTGCTGTCCAAGCAGTGATCATAAGTTCTCAGCTGAAAGAAATGTTGAGAAATGTTAATTCACCGGCTCCATTTCAAGGAAACTCCAGACCCATCAAACTTGTATATCATCCAAGGGAACCATTCTTTGTCATCAAGCAGGCAAGTCAGAATTTATTTTGTTTCATTTAA

Coding sequence (CDS)

ATGGCATGCTTTCAGAGAGCTTCACCAGCTTTGAAGGAGATCCTCCTTAAACTGTACAGTTTGGAGAAGCCCACTGAAATTGAACATCAATTGCATGAATTTGGTTCTGTTCAGTACCATATCAAGTCTTCCATATCAGAAGCACACCACATTTACTTGTCAATTGCCACTCCATTGTTGTCACAAGGGGTTCTTTTATCTGATGGGCTCTCACCGTACACTGTCGAGATGGTAAAACAAATTTGCTCTCATGCTGTTGATATCATTGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGAATCGACTCTGCAAAAATTTTGCATGGGGAAGAGTCAGAAAAGATCATTACAGACATTGCTGCTGTCCAAGCAGTGATCATAAGTTCTCAGCTGAAAGAAATGTTGAGAAATGTTAATTCACCGGCTCCATTTCAAGGAAACTCCAGACCCATCAAACTTGTATATCATCCAAGGGAACCATTCTTTGTCATCAAGCAGGCAAGTCAGAATTTATTTTGTTTCATTTAA

Protein sequence

MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLLSQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDIAAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCFI
Homology
[Close]
BLAST of Cla97C05G084740 vs. NCBI nr
Match: XP_008438473.1 (PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 7.3e-77
Identity = 152/175 (86.86%), Postives = 162/175 (92.57%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYSLEKPTEIEH LHE+GSVQYHI+SS+ +  HIYLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSLEKPTEIEHHLHEYGSVQYHIQSSVPDPQHIYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVLLSDGLSPYTVEMVKQI SHAV+IIEPAKEGY+LTLRIDSAKILHGEESEKIITDI
Sbjct: 61  SQGVLLSDGLSPYTVEMVKQIFSHAVEIIEPAKEGYELTLRIDSAKILHGEESEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAVQAVIISSQLKE+LRNVNSP  FQG SRPIKLVYHPREPFFV+KQ  + L  +
Sbjct: 121 AAVQAVIISSQLKEVLRNVNSPTLFQGISRPIKLVYHPREPFFVVKQPQKILIIY 175

[Close]
BLAST of Cla97C05G084740 vs. NCBI nr
Match: XP_004134045.2 (PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis sativus] >KGN56823.1 hypothetical protein Csa_3G134720 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 3.6e-76
Identity = 149/175 (85.14%), Postives = 162/175 (92.57%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYSLEKPTEIEH LHE+GSVQYHI+SS+ +  HIYLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSLEKPTEIEHHLHEYGSVQYHIQSSVPDPQHIYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQG LLSDGLSPYTVEMVKQICSHA++IIEPAKEGY+LTLRI+SAKILHGEESEKIITDI
Sbjct: 61  SQGDLLSDGLSPYTVEMVKQICSHAIEIIEPAKEGYELTLRINSAKILHGEESEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAVQAVIISS+LKE+LRNVNSP  FQG SRPIKLVYHPREPFFV+KQ  + L  +
Sbjct: 121 AAVQAVIISSRLKEVLRNVNSPTLFQGISRPIKLVYHPREPFFVVKQPQKILIIY 175

[Close]
BLAST of Cla97C05G084740 vs. NCBI nr
Match: XP_023527991.1 (actin-related protein 2/3 complex subunit 2B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 148/175 (84.57%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYS E PTEIEH LHEFGSVQYHI+S IS++ H+YLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSSENPTEIEHHLHEFGSVQYHIQSFISDSLHVYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVLLSDGLSPYT+EMVKQICSHAV+IIEPAKEGY+LTLRID AKI+H EE EKIITDI
Sbjct: 61  SQGVLLSDGLSPYTLEMVKQICSHAVEIIEPAKEGYKLTLRIDFAKIMHEEEPEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAV AVI+SSQLKEML NVNSPA FQG SRPIKLVYHPREPFFVIKQ  + L  F
Sbjct: 121 AAVHAVILSSQLKEMLLNVNSPALFQGTSRPIKLVYHPREPFFVIKQPQKILIVF 175

[Close]
BLAST of Cla97C05G084740 vs. NCBI nr
Match: XP_022924634.1 (actin-related protein 2/3 complex subunit 2B [Cucurbita moschata])

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 149/175 (85.14%), Postives = 158/175 (90.29%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYS E PTEIEH LHEFGSVQYHI+SSIS++ H+YLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSSENPTEIEHHLHEFGSVQYHIQSSISDSLHVYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVLLSDGLSPYT+EMVKQICSHAV+IIEPAKEGY+LTLRID AKILH EE EKIITDI
Sbjct: 61  SQGVLLSDGLSPYTLEMVKQICSHAVEIIEPAKEGYKLTLRIDFAKILHEEEPEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAV AVI+SSQLKEML NVNSPA  QG SRPIKLVYHPREPFFVIKQ  + L  F
Sbjct: 121 AAVHAVILSSQLKEMLINVNSPALCQGTSRPIKLVYHPREPFFVIKQPQKILIVF 175

[Close]
BLAST of Cla97C05G084740 vs. NCBI nr
Match: XP_022979368.1 (actin-related protein 2/3 complex subunit 2B [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 7.6e-74
Identity = 148/175 (84.57%), Postives = 157/175 (89.71%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYS E PTEIEH LHEFGSVQYHI+S IS++ H+YLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSSENPTEIEHHLHEFGSVQYHIQSFISDSLHVYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVLLSDGLSPYT+EMVKQICSH V+IIEPAKEGY+LTLRID AKILH EE EKIITDI
Sbjct: 61  SQGVLLSDGLSPYTLEMVKQICSHGVEIIEPAKEGYKLTLRIDFAKILHEEEPEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAV AVI+SSQLKEML NVNSPA FQG SRPIKLVYHPREPFFVIKQ  + L  F
Sbjct: 121 AAVHAVILSSQLKEMLINVNSPALFQGTSRPIKLVYHPREPFFVIKQPQKILIVF 175

[Close]
BLAST of Cla97C05G084740 vs. TrEMBL
Match: tr|A0A1S3AWJ6|A0A1S3AWJ6_CUCME (Arp2/3 complex 34 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103483557 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 4.9e-77
Identity = 152/175 (86.86%), Postives = 162/175 (92.57%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYSLEKPTEIEH LHE+GSVQYHI+SS+ +  HIYLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSLEKPTEIEHHLHEYGSVQYHIQSSVPDPQHIYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVLLSDGLSPYTVEMVKQI SHAV+IIEPAKEGY+LTLRIDSAKILHGEESEKIITDI
Sbjct: 61  SQGVLLSDGLSPYTVEMVKQIFSHAVEIIEPAKEGYELTLRIDSAKILHGEESEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAVQAVIISSQLKE+LRNVNSP  FQG SRPIKLVYHPREPFFV+KQ  + L  +
Sbjct: 121 AAVQAVIISSQLKEVLRNVNSPTLFQGISRPIKLVYHPREPFFVVKQPQKILIIY 175

[Close]
BLAST of Cla97C05G084740 vs. TrEMBL
Match: tr|A0A0A0L4Y8|A0A0A0L4Y8_CUCSA (Arp2/3 complex 34 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134720 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 2.4e-76
Identity = 149/175 (85.14%), Postives = 162/175 (92.57%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACFQRASPALKEILLKLYSLEKPTEIEH LHE+GSVQYHI+SS+ +  HIYLSIATPLL
Sbjct: 1   MACFQRASPALKEILLKLYSLEKPTEIEHHLHEYGSVQYHIQSSVPDPQHIYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQG LLSDGLSPYTVEMVKQICSHA++IIEPAKEGY+LTLRI+SAKILHGEESEKIITDI
Sbjct: 61  SQGDLLSDGLSPYTVEMVKQICSHAIEIIEPAKEGYELTLRINSAKILHGEESEKIITDI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
           AAVQAVIISS+LKE+LRNVNSP  FQG SRPIKLVYHPREPFFV+KQ  + L  +
Sbjct: 121 AAVQAVIISSRLKEVLRNVNSPTLFQGISRPIKLVYHPREPFFVVKQPQKILIIY 175

[Close]
BLAST of Cla97C05G084740 vs. TrEMBL
Match: tr|A0A2K1YQ07|A0A2K1YQ07_POPTR (Arp2/3 complex 34 kDa subunit OS=Populus trichocarpa OX=3694 GN=POPTR_010G067100v3 PE=3 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 6.0e-59
Identity = 116/167 (69.46%), Postives = 144/167 (86.23%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACF R SPAL+EILLKLY  EKP EI+H L+EFGSV+YH++SS ++  H YLSI+TPLL
Sbjct: 1   MACFDRVSPALREILLKLYRAEKPVEIDHHLYEFGSVEYHVQSSAADPQHNYLSISTPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQG LLS GLS YT++MVKQ+CS AV+I+EPAKEGYQLTL+++ AK+  G++SEK+IT I
Sbjct: 61  SQGALLSYGLSSYTMQMVKQVCSDAVEIVEPAKEGYQLTLKLNFAKVPIGKDSEKVITQI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQ 168
           ++VQAVI+SSQLKEMLRNVNS    QG ++PIKLVYHPREPF+VI+Q
Sbjct: 121 SSVQAVILSSQLKEMLRNVNSQDTSQGMNKPIKLVYHPREPFYVIRQ 167

[Close]
BLAST of Cla97C05G084740 vs. TrEMBL
Match: tr|B9HSS9|B9HSS9_POPTR (Arp2/3 complex 34 kDa subunit OS=Populus trichocarpa OX=3694 GN=POPTR_010G067100v3 PE=3 SV=2)

HSP 1 Score: 236.1 bits (601), Expect = 6.0e-59
Identity = 116/167 (69.46%), Postives = 144/167 (86.23%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACF R SPAL+EILLKLY  EKP EI+H L+EFGSV+YH++SS ++  H YLSI+TPLL
Sbjct: 1   MACFDRVSPALREILLKLYRAEKPVEIDHHLYEFGSVEYHVQSSAADPQHNYLSISTPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQG LLS GLS YT++MVKQ+CS AV+I+EPAKEGYQLTL+++ AK+  G++SEK+IT I
Sbjct: 61  SQGALLSYGLSSYTMQMVKQVCSDAVEIVEPAKEGYQLTLKLNFAKVPIGKDSEKVITQI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQ 168
           ++VQAVI+SSQLKEMLRNVNS    QG ++PIKLVYHPREPF+VI+Q
Sbjct: 121 SSVQAVILSSQLKEMLRNVNSQDTSQGMNKPIKLVYHPREPFYVIRQ 167

[Close]
BLAST of Cla97C05G084740 vs. TrEMBL
Match: tr|D7SZM6|D7SZM6_VITVI (Arp2/3 complex 34 kDa subunit OS=Vitis vinifera OX=29760 GN=VIT_05s0049g01740 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58
Identity = 117/167 (70.06%), Postives = 140/167 (83.83%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MACF+RASPALKEILLKLY  EKP EI+H L+EFGSV+YH++SS S+ H  YLSIATPLL
Sbjct: 1   MACFERASPALKEILLKLYRTEKPMEIDHHLYEFGSVEYHVQSSASDPHDTYLSIATPLL 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           SQGVL S GLS YT+EM+K ICS  ++I+EPA+EGYQLTLR+D AKI  G++  K+I  I
Sbjct: 61  SQGVLPSHGLSHYTIEMIKGICSDVLEIVEPAREGYQLTLRLDLAKIPQGKDGAKVIAQI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQ 168
           ++VQAVI+SSQLKEML+NVNS    QG  +PIKLVYHPREPFFVI+Q
Sbjct: 121 SSVQAVILSSQLKEMLQNVNSQDTSQGMYKPIKLVYHPREPFFVIRQ 167

[Close]
BLAST of Cla97C05G084740 vs. Swiss-Prot
Match: sp|F4IVU1|ARC2B_ARATH (Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana OX=3702 GN=ARPC2B PE=2 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.7e-38
Identity = 84/172 (48.84%), Postives = 121/172 (70.35%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MA  +RASP LKE LLK+Y  EKP E++   HEFGS++YHIK S+S+ + +++S +T L 
Sbjct: 1   MAYLERASPTLKETLLKIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLE 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           +QG +    +S YT E++K I    +DI++P + G+QLTL ++   I  G+E+ KIIT I
Sbjct: 61  TQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSR-----PIKLVYHPREPFFVIKQ 168
           + +QA+I+SSQLKEMLR++N    FQ +SR     PI++VYHP EPF+V KQ
Sbjct: 121 SELQAIILSSQLKEMLRSLN----FQDDSRSINNMPIRIVYHPSEPFYVFKQ 168

[Close]
BLAST of Cla97C05G084740 vs. Swiss-Prot
Match: sp|Q8LGI3|ARC2A_ARATH (Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana OX=3702 GN=ARPC2A PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.0e-14
Identity = 41/165 (24.85%), Postives = 92/165 (55.76%), Query Frame = 0 

Query: 11  LKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLLSQGVLLSDGL 70
           L+ +L +  +L+K  E+++Q  EF  V+YH++ ++   + + LS++ P      +  DGL
Sbjct: 12  LQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGL 71

Query: 71  SPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDIAAVQAVIISS 130
               +E +K        I++P ++G+ LTL+++ +K+      E+++T +A+++ V++ +
Sbjct: 72  PLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKV---RPDEELLTKLASIREVVMGA 131

Query: 131 QLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
            LK + +++ S        R + +++ P E FF++ QA +    F
Sbjct: 132 PLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAF 173

[Close]
BLAST of Cla97C05G084740 vs. TAIR10
Match: AT2G33385.2 (actin-related protein C2B)

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-39
Identity = 84/172 (48.84%), Postives = 121/172 (70.35%), Query Frame = 0 

Query: 1   MACFQRASPALKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLL 60
           MA  +RASP LKE LLK+Y  EKP E++   HEFGS++YHIK S+S+ + +++S +T L 
Sbjct: 1   MAYLERASPTLKETLLKIYRAEKPIEVDQHFHEFGSIEYHIKYSVSDPNIVHVSTSTLLE 60

Query: 61  SQGVLLSDGLSPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDI 120
           +QG +    +S YT E++K I    +DI++P + G+QLTL ++   I  G+E+ KIIT I
Sbjct: 61  TQGAVTLKEISSYTYEVIKNIGVGVIDIVDPPRLGFQLTLGLNLDNIPRGKEAIKIITRI 120

Query: 121 AAVQAVIISSQLKEMLRNVNSPAPFQGNSR-----PIKLVYHPREPFFVIKQ 168
           + +QA+I+SSQLKEMLR++N    FQ +SR     PI++VYHP EPF+V KQ
Sbjct: 121 SELQAIILSSQLKEMLRSLN----FQDDSRSINNMPIRIVYHPSEPFYVFKQ 168

[Close]
BLAST of Cla97C05G084740 vs. TAIR10
Match: AT1G30825.1 (Arp2/3 complex, 34 kD subunit p34-Arc)

HSP 1 Score: 79.0 bits (193), Expect = 3.3e-15
Identity = 41/165 (24.85%), Postives = 92/165 (55.76%), Query Frame = 0 

Query: 11  LKEILLKLYSLEKPTEIEHQLHEFGSVQYHIKSSISEAHHIYLSIATPLLSQGVLLSDGL 70
           L+ +L +  +L+K  E+++Q  EF  V+YH++ ++   + + LS++ P      +  DGL
Sbjct: 12  LQTLLTRAQNLDKAVELDYQWIEFDDVRYHVQVTMKNPNLLLLSVSLPNPPPEAMSFDGL 71

Query: 71  SPYTVEMVKQICSHAVDIIEPAKEGYQLTLRIDSAKILHGEESEKIITDIAAVQAVIISS 130
               +E +K        I++P ++G+ LTL+++ +K+      E+++T +A+++ V++ +
Sbjct: 72  PLGAIEAIKTTYGTGFQILDPPRDGFSLTLKLNFSKV---RPDEELLTKLASIREVVMGA 131

Query: 131 QLKEMLRNVNSPAPFQGNSRPIKLVYHPREPFFVIKQASQNLFCF 176
            LK + +++ S        R + +++ P E FF++ QA +    F
Sbjct: 132 PLKIIFKHLASRTVAPELDRLVAIMHRPNETFFLVPQADKVTVAF 173

The following BLAST results are available for this feature:
BLAST of Cla97C05G084740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008438473.17.3e-7786.86PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis melo][more]
XP_004134045.23.6e-7685.14PREDICTED: actin-related protein 2/3 complex subunit 2B [Cucumis sativus] >KGN56... [more]
XP_023527991.13.4e-7484.57actin-related protein 2/3 complex subunit 2B [Cucurbita pepo subsp. pepo][more]
XP_022924634.14.5e-7485.14actin-related protein 2/3 complex subunit 2B [Cucurbita moschata][more]
XP_022979368.17.6e-7484.57actin-related protein 2/3 complex subunit 2B [Cucurbita maxima][more]
BLAST of Cla97C05G084740 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AWJ6|A0A1S3AWJ6_CUCME4.9e-7786.86Arp2/3 complex 34 kDa subunit OS=Cucumis melo OX=3656 GN=LOC103483557 PE=3 SV=1[more]
tr|A0A0A0L4Y8|A0A0A0L4Y8_CUCSA2.4e-7685.14Arp2/3 complex 34 kDa subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134720 PE=3 SV... [more]
tr|A0A2K1YQ07|A0A2K1YQ07_POPTR6.0e-5969.46Arp2/3 complex 34 kDa subunit OS=Populus trichocarpa OX=3694 GN=POPTR_010G067100... [more]
tr|B9HSS9|B9HSS9_POPTR6.0e-5969.46Arp2/3 complex 34 kDa subunit OS=Populus trichocarpa OX=3694 GN=POPTR_010G067100... [more]
tr|D7SZM6|D7SZM6_VITVI3.0e-5870.06Arp2/3 complex 34 kDa subunit OS=Vitis vinifera OX=29760 GN=VIT_05s0049g01740 PE... [more]
BLAST of Cla97C05G084740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|F4IVU1|ARC2B_ARATH2.7e-3848.84Actin-related protein 2/3 complex subunit 2B OS=Arabidopsis thaliana OX=3702 GN=... [more]
sp|Q8LGI3|ARC2A_ARATH6.0e-1424.85Actin-related protein 2/3 complex subunit 2A OS=Arabidopsis thaliana OX=3702 GN=... [more]
BLAST of Cla97C05G084740 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G33385.21.5e-3948.84actin-related protein C2B[more]
AT1G30825.13.3e-1524.85Arp2/3 complex, 34 kD subunit p34-Arc[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0030041actin filament polymerization
GO:0030833regulation of actin filament polymerization
GO:0034314Arp2/3 complex-mediated actin nucleation
Vocabulary: Cellular Component
TermDefinition
GO:0015629actin cytoskeleton
GO:0005885Arp2/3 protein complex
Vocabulary: INTERPRO
TermDefinition
IPR007188ARPC2
IPR034666ARPC2/4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030041 actin filament polymerization
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0030833 regulation of actin filament polymerization
cellular_component GO:0015629 actin cytoskeleton
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005856 cytoskeleton
molecular_function GO:0003779 actin binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G084740.1Cla97C05G084740.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034666Arp2/3 complex subunit 2/4GENE3DG3DSA:3.30.1460.20coord: 1..137
e-value: 5.9E-13
score: 51.1
IPR034666Arp2/3 complex subunit 2/4SUPERFAMILYSSF69645Arp2/3 complex subunitscoord: 1..126
NoneNo IPR availablePANTHERPTHR12058:SF1ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2Bcoord: 1..170
IPR007188Actin-related protein 2/3 complex subunit 2PANTHERPTHR12058ARP2/3 COMPLEX 34 KDA SUBUNITcoord: 1..170

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G084740MELO3C006386Melon (DHL92) v3.5.1mewmbB434
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G084740Cucumber (Chinese Long) v2cuwmbB131
Cla97C05G084740Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G084740Cucumber (Chinese Long) v2cuwmbB225
Cla97C05G084740Bottle gourd (USVL1VR-Ls)lsiwmbB015
Cla97C05G084740Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G084740Bottle gourd (USVL1VR-Ls)lsiwmbB335
Cla97C05G084740Melon (DHL92) v3.6.1medwmbB323
Cla97C05G084740Melon (DHL92) v3.6.1medwmbB374
Cla97C05G084740Melon (DHL92) v3.6.1medwmbB423
Cla97C05G084740Melon (DHL92) v3.5.1mewmbB335
Cla97C05G084740Melon (DHL92) v3.5.1mewmbB384
Cla97C05G084740Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G084740Watermelon (Charleston Gray)wcgwmbB269
Cla97C05G084740Watermelon (Charleston Gray)wcgwmbB304
Cla97C05G084740Watermelon (97103) v1wmwmbB161
Cla97C05G084740Watermelon (97103) v1wmwmbB206
Cla97C05G084740Watermelon (97103) v1wmwmbB402
Cla97C05G084740Wax gourdwgowmbB072
Cla97C05G084740Wax gourdwgowmbB183
Cla97C05G084740Wax gourdwgowmbB257
Cla97C05G084740Watermelon (97103) v2wmbwmbB137
Cla97C05G084740Watermelon (97103) v2wmbwmbB141
Cla97C05G084740Silver-seed gourdcarwmbB0229
Cla97C05G084740Silver-seed gourdcarwmbB0236
Cla97C05G084740Silver-seed gourdcarwmbB1008
Cla97C05G084740Silver-seed gourdcarwmbB0817
Cla97C05G084740Silver-seed gourdcarwmbB1131
Cla97C05G084740Cucumber (Gy14) v2cgybwmbB124
Cla97C05G084740Cucumber (Gy14) v2cgybwmbB196
Cla97C05G084740Cucumber (Gy14) v2cgybwmbB213
Cla97C05G084740Cucumber (Gy14) v1cgywmbB452
Cla97C05G084740Cucumber (Gy14) v1cgywmbB657
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB006
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB366
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB648
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G084740Cucurbita maxima (Rimu)cmawmbB914
Cla97C05G084740Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G084740Cucurbita moschata (Rifu)cmowmbB350
Cla97C05G084740Cucurbita moschata (Rifu)cmowmbB622
Cla97C05G084740Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G084740Cucurbita moschata (Rifu)cmowmbB886
Cla97C05G084740Wild cucumber (PI 183967)cpiwmbB133
Cla97C05G084740Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G084740Wild cucumber (PI 183967)cpiwmbB229
Cla97C05G084740Cucumber (Chinese Long) v3cucwmbB134
Cla97C05G084740Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G084740Cucumber (Chinese Long) v3cucwmbB224