Cla97C05G081990 (gene) Watermelon (97103) v2

NameCla97C05G081990
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionmediator of RNA polymerase II transcription subunit 2-like
LocationCla97Chr05 : 1530097 .. 1530988 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTGGAGACGGGTTAATGAATGACAGAATGGTCCGACCCGGTTCAATATAAATTGCTTCATCACAGTTTCTAACTTTATTCGGGCTAGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGTAACTTCTAATAATGGATTAATTTTTCGAATAAACTGTTTGTACGTTCCAGTTGATTCACTTTCGTGGTTCTTATACTACTGTTCTTACTTGGGCGAATTGATTAGGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTAAGTCTCCCTCTTTCTCTCCATGGAATCGAGAAAATCTTCATTGATTAAAAAATATTGAAGTTAGGGGCAGAGATTGCTTATTGTTTCTGTTTGGTTTACACTTCATCTGGGAATTTTCTCATACGGGTAATGTTCTAGTTTTCACTTATTCCAATAGCATAACCCACGAGCATTTTGTCCACTAAGATTGAGAAGTTTAATGACTTCCTACTGCATGATTTTTTTGGATAAGATTGAGAAGTTTAACGACTTCCTACTGCATGATTTTTCTGGATAATTAGGCAATACTCGATGGATTTGGAACAAGTTCTGTTTGCTGTTCGTGTTCTTTTAATACCATTCGAAAGTCTTATGATTTTCGTATAATTATGTTCTTAGGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

mRNA sequence

ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

Coding sequence (CDS)

ATGTCATTGGAGACGGGGTTTAAGAAAACGGTGATCTTCGCGATATCTGCGAGCAAATTTCCGGCGGCAGGGAGAAACAATATGTCGAAGAAGAACAATCTTTCGCGCAGGAAGAAGCAATATGAATTCGACCTTCAAAGGGAGAAACAAGAAAAGGAAAAGGCCGCGAAGAAGCTTCAAGCAAAGAAGAATAAGATGAAAGTTGATGGTAGTGGAAAGAAAAAGAAGGGTGGAGGTGGATTTCAAGTTGGGAAGAAAAAAGTGAAGACCAAGTTGACGGCAGCAGCAAAAGCAAAAGCTTCCCAGGCTATGGAGCTTGATAAATGA

Protein sequence

MSLETGFKKTVIFAISASKFPAAGRNNMSKKNNLSRRKKQYEFDLQREKQEKEKAAKKLQAKKNKMKVDGSGKKKKGGGGFQVGKKKVKTKLTAAAKAKASQAMELDK
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G081990.1Cla97C05G081990.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 31..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..74
NoneNo IPR availablePANTHERPTHR36745FAMILY NOT NAMEDcoord: 28..108

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G081990Bhi01G000262Wax gourdwgowmbB182
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G081990Watermelon (97103) v2wmbwmbB130
Cla97C05G081990Silver-seed gourdcarwmbB0405
Cla97C05G081990Silver-seed gourdcarwmbB0513
Cla97C05G081990Silver-seed gourdcarwmbB0773
Cla97C05G081990Silver-seed gourdcarwmbB1041
Cla97C05G081990Cucumber (Gy14) v2cgybwmbB196
Cla97C05G081990Cucumber (Gy14) v2cgybwmbB216
Cla97C05G081990Cucumber (Gy14) v1cgywmbB452
Cla97C05G081990Cucumber (Gy14) v1cgywmbB524
Cla97C05G081990Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G081990Cucurbita maxima (Rimu)cmawmbB344
Cla97C05G081990Cucurbita maxima (Rimu)cmawmbB429
Cla97C05G081990Cucurbita maxima (Rimu)cmawmbB856
Cla97C05G081990Cucurbita maxima (Rimu)cmawmbB861
Cla97C05G081990Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G081990Cucurbita moschata (Rifu)cmowmbB410
Cla97C05G081990Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G081990Cucurbita moschata (Rifu)cmowmbB834
Cla97C05G081990Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G081990Wild cucumber (PI 183967)cpiwmbB232
Cla97C05G081990Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G081990Cucumber (Chinese Long) v3cucwmbB227
Cla97C05G081990Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G081990Cucumber (Chinese Long) v2cuwmbB226
Cla97C05G081990Bottle gourd (USVL1VR-Ls)lsiwmbB331
Cla97C05G081990Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G081990Melon (DHL92) v3.6.1medwmbB423
Cla97C05G081990Melon (DHL92) v3.6.1medwmbB436
Cla97C05G081990Melon (DHL92) v3.5.1mewmbB434
Cla97C05G081990Melon (DHL92) v3.5.1mewmbB437
Cla97C05G081990Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G081990Watermelon (Charleston Gray)wcgwmbB231
Cla97C05G081990Watermelon (97103) v1wmwmbB206
Cla97C05G081990Watermelon (97103) v1wmwmbB210