Cla97C05G080700 (gene) Watermelon (97103) v2

Overview
NameCla97C05G080700
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionArginine/serine-rich splicing factor, putative
LocationCla97Chr05 : 684210 .. 685373 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACGTCTCTACCGCTATATGAGCATCAGTCCTCCCGTATTTGCAGGTGTTGTATTTTTTATAGTTTATCCTAGGGAAAGAAATCACGAGGCTGAGTGACAATACCTGCTAGATGGATGATGCTTCAACAGCTTACCAGTTTTATATATCTTATTGTTATTTTTTTTTGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGTTAGACCTCTCTCACTACATTCTTCTGTCCCTCCTTGCCCTTCCTTTTGGGTTTATGTATTTTAGAAGCTGGTTTATTTCATGTTCGGAAGATGGGTCATTTTATTCTAACTTTTGGTTTGAATGGATTAGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGGTAAGCCGAGTTTTGATTCTCCCGCATGCTTTCTCTTTTCATTTGGTGTATTTATTTCCTTCTCTCTTATGGACGTGAAATATTGTATTGTGCCTTGTAATTTTGCAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGGTAATCTTTGTTCTTTGATAGTTGGCACAACCTGCATTTTGAGTTACCATAGCTCGTAGCTCAAGCTAACCGGCGTTTTCATGCCTTTTTTGACAGTCGTTCGCCCATTCGGAGGTCAAGAACCTGA

mRNA sequence

ATGCAACGTCTCTACCGCTATATGAGCATCAGTCCTCCCGTATTTGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGTCGTTCGCCCATTCGGAGGTCAAGAACCTGA

Coding sequence (CDS)

ATGCAACGTCTCTACCGCTATATGAGCATCAGTCCTCCCGTATTTGCAGGTTTTGCCTTTGTTTACTTTGAAGATGAGAGGGATGCTGAAGATGCTATTCGGGGACTTGATAACTTGCCATTTGGTTATGATAGACGCAGATTGTCTGTGGAATGGGCTAGGGGTGAACGAGGTCGTCATCGTGATGGGTCCAAGTCAATGGCAAATCAGAGGCCAACAAAAACCCTGTTTGTGATCAATTTTGACCCGATTCGCACAAGAGTTCGTGATATTGAAAGACATTTTGAACCTTATGGGAAGGTGCTCAATGTTCGCATTAGAAGGAATTTTGCATTTGTACAATTTGAGACGCAGGAGGATGCAACTAAAGCCCTTGAGTGTACCCACATGAGCAAAATATTAGACAGGGTTGTGTCAGTTGAATATGCTTTGAGGGATGACGGTGAGAGGGGTGATCCTTTCGATGAAAGCCCTCGAAGAGCAGGTTATGGGCGACCAGGGGATAGTCCCTACAGGAGGTCCCCTAGTCCTGTGTTTCGCCGTCGACCAAGTCCCGACTATGGGCGAGCTCGTAGCCCTGCTTATGATAGGTATAATGGGCCTTATGAACGACGTAGGAGTCCTGATTATGGTAGGAACCGAAGCCCTGAATATGGTGGTAGATTTCGCAGTCGTTCGCCCATTCGGAGGTCAAGAACCTGA

Protein sequence

MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGDSPYRRSPSPVFRRRPSPDYGRARSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSPIRRSRT
Homology
[Close]
BLAST of Cla97C05G080700 vs. NCBI nr
Match: XP_011650665.1 (PREDICTED: serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus] >XP_016899085.1 PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X2 [Cucumis melo])

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLYRYM ISPP+FAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH
Sbjct: 1   MQRLYRYMCISPPIFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED
Sbjct: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDXXXXXXXXXXX 180
           ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA GYGRPGD  XXXXXXXXX
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234

[Close]
BLAST of Cla97C05G080700 vs. NCBI nr
Match: XP_022147392.1 (serine/arginine-rich splicing factor RS31-like isoform X2 [Momordica charantia])

HSP 1 Score: 335.9 bits (860), Expect = 1.1e-88
Identity = 162/168 (96.43%), Postives = 165/168 (98.21%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLYRYM ISPP+FAGFAFVYFEDERDAEDAIRGLDN+ FGYDRRRLSVEWARGERGRH
Sbjct: 1   MQRLYRYMCISPPIFAGFAFVYFEDERDAEDAIRGLDNMAFGYDRRRLSVEWARGERGRH 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKS+ANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED
Sbjct: 61  RDGSKSIANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGD 169
           ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA YGRPGD
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAAYGRPGD 168

[Close]
BLAST of Cla97C05G080700 vs. NCBI nr
Match: XP_022924569.1 (serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 318.5 bits (815), Expect = 1.8e-83
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLY YM ISPP+FAGFAFVYFE+ERDAED+IR LDN+PFGYDRRRLSVEWARGERGR 
Sbjct: 1   MQRLYSYMCISPPIFAGFAFVYFEEERDAEDSIRSLDNMPFGYDRRRLSVEWARGERGRS 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQE+
Sbjct: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEE 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGD 169
           ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA YGR GD
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRAAYGRLGD 168

[Close]
BLAST of Cla97C05G080700 vs. NCBI nr
Match: XP_023527372.1 (serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.6 bits (810), Expect = 7.0e-83
Identity = 153/168 (91.07%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLY YM ISPP+FAGFAFVYFE+ERDAED+IR LDN+PFGYDRRRLSVEWARGERGR 
Sbjct: 1   MQRLYSYMCISPPIFAGFAFVYFEEERDAEDSIRSLDNMPFGYDRRRLSVEWARGERGRS 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKSMANQRPTKTLFVINFDPIRTRV DIERHFEPYGKVLNVRIRRNFAFVQFETQE+
Sbjct: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVHDIERHFEPYGKVLNVRIRRNFAFVQFETQEE 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGD 169
           ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA YGR GD
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRAAYGRLGD 168

[Close]
BLAST of Cla97C05G080700 vs. NCBI nr
Match: XP_022979304.1 (serine/arginine-rich splicing factor RS31A-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 153/168 (91.07%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLY YM IS P+FAGFAFVYFE+ERDAED+IR LDN+PFGYDRRRLSVEWARGERGR 
Sbjct: 1   MQRLYSYMCISSPIFAGFAFVYFEEERDAEDSIRSLDNMPFGYDRRRLSVEWARGERGRS 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQE+
Sbjct: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEE 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGD 169
           ATKALECTHMSKILDRVVSVEYALRDDGERGD +D+SPRRA YGR GD
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDHYDDSPRRAAYGRLGD 168

[Close]
BLAST of Cla97C05G080700 vs. TrEMBL
Match: tr|A0A1S4DTR0|A0A1S4DTR0_CUCME (serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 7.8e-91
Identity = 229/234 (97.86%), Postives = 230/234 (98.29%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           MQRLYRYM ISPP+FAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH
Sbjct: 1   MQRLYRYMCISPPIFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
           RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED
Sbjct: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDXXXXXXXXXXX 180
           ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRA GYGRPGD  XXXXXXXXX
Sbjct: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPXXXXXXXXX 180

Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234

[Close]
BLAST of Cla97C05G080700 vs. TrEMBL
Match: tr|A0A1S3AUZ7|A0A1S3AUZ7_CUCME (serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483164 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 6.6e-82
Identity = 215/219 (98.17%), Postives = 216/219 (98.63%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 136 RVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDXXXXXXXXXXXXXXXXXXXXXXXXXX 195
           RVVSVEYALRDDGERGDPFDESPRRA GYGRPGD  XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXX 214

Query: 196 XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT
Sbjct: 215 XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 253

[Close]
BLAST of Cla97C05G080700 vs. TrEMBL
Match: tr|A0A0A0L8H4|A0A0A0L8H4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 6.6e-82
Identity = 215/219 (98.17%), Postives = 216/219 (98.63%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75
           +GFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT
Sbjct: 35  SGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 94

Query: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135
           LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD
Sbjct: 95  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 154

Query: 136 RVVSVEYALRDDGERGDPFDESPRRA-GYGRPGDXXXXXXXXXXXXXXXXXXXXXXXXXX 195
           RVVSVEYALRDDGERGDPFDESPRRA GYGRPGD  XXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 155 RVVSVEYALRDDGERGDPFDESPRRAGGYGRPGDSPXXXXXXXXXXXXXXXXXXXXXXXX 214

Query: 196 XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 234
           XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT
Sbjct: 215 XXXXXXXXXXXXXXXXXXXXXXXXXXRFRSRSPIRRSRT 253

[Close]
BLAST of Cla97C05G080700 vs. TrEMBL
Match: tr|A0A1U7ZW00|A0A1U7ZW00_NELNU (serine/arginine-rich splicing factor RS31-like isoform X3 OS=Nelumbo nucifera OX=4432 GN=LOC104594166 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.6e-72
Identity = 141/162 (87.04%), Postives = 150/162 (92.59%), Query Frame = 0 

Query: 8   MSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR-GERGRHRDGSKS 67
           M IS  +FAGFAFVYF+DERDAEDAIRGLD+ PFGY RRRLSVEWAR G+RGRHR+GS++
Sbjct: 11  MFISLHIFAGFAFVYFDDERDAEDAIRGLDDTPFGYSRRRLSVEWARQGDRGRHREGSRA 70

Query: 68  MANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALE 127
           MANQRPTKTLFVINFDPIRTR+RDIERHFEPYGKVL+VRIRRNFAFVQFETQEDATKALE
Sbjct: 71  MANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRIRRNFAFVQFETQEDATKALE 130

Query: 128 CTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGRPGD 169
           CTHMSKILDRVVSVEYALRDDGER D  D SPRR GYGR GD
Sbjct: 131 CTHMSKILDRVVSVEYALRDDGERSDRRD-SPRRGGYGRRGD 171

[Close]
BLAST of Cla97C05G080700 vs. TrEMBL
Match: tr|I1KHT1|I1KHT1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100801043 PE=4 SV=2)

HSP 1 Score: 278.5 bits (711), Expect = 1.4e-71
Identity = 135/165 (81.82%), Postives = 151/165 (91.52%), Query Frame = 0 

Query: 1   MQRLYRYMSISPPVFAGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRH 60
           +QRLY +M ISP +++GFAFVY+EDERDAE+AIR LDN+PFG+++RRLSVEWARGERGRH
Sbjct: 6   IQRLYSFMCISPHLYSGFAFVYYEDERDAEEAIRALDNVPFGHEKRRLSVEWARGERGRH 65

Query: 61  RDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQED 120
            DGSK  ANQ+PTKTLFVINFDPIRTRVRDIE+HFEPYG VL+VRIRRNFAFVQFETQED
Sbjct: 66  HDGSK--ANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGNVLHVRIRRNFAFVQFETQED 125

Query: 121 ATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGYGR 166
           ATKALECT+MSKILDRVVSVEYALRDDGERGD +D   RR GY R
Sbjct: 126 ATKALECTNMSKILDRVVSVEYALRDDGERGDNYDSPRRRGGYER 168

[Close]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match: sp|P92964|SRS31_ARATH (Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS31 PE=1 SV=2)

HSP 1 Score: 227.6 bits (579), Expect = 1.4e-58
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T  SKILD
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154

Query: 136 RVVSVEYALRDDGERGD-PFDESPRRA 162
           RVVSVEYAL+DD ER D     SPRR+
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRS 181

[Close]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match: sp|Q9ZPX8|RS31A_ARATH (Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS31A PE=1 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.9e-56
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 75
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 76  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 135
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 154

Query: 136 ILDRVVSVEYALRDDGERGD 153
           +LD+VVSVEYALR+ GER D
Sbjct: 155 LLDKVVSVEYALREAGERED 173

[Close]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match: sp|P92966|SRS41_ARATH (Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS41 PE=1 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 2.1e-46
Identity = 90/148 (60.81%), Postives = 112/148 (75.68%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 75
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 76  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 135
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154

Query: 136 ILDRVVSVEYALRDDGERGDPFDESPRR 161
           ++D+V+SVEYA++DD  RG+ +    RR
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGYSPERRR 182

[Close]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match: sp|P92965|RS40_ARATH (Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS40 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 7.4e-44
Identity = 88/149 (59.06%), Postives = 108/149 (72.48%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHR----DGSKSMANQR 75
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG  +             R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKXXXXXXXXXXXXXR 94

Query: 76  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMS 135
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ S
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154

Query: 136 KILDRVVSVEYALRDDGERGDPFDESPRR 161
           K++D+V+SVEYA++DD  RG+      RR
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGHSPERRR 183

[Close]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match: sp|Q54PB2|MRD1_DICDI (Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.0e-06
Identity = 38/150 (25.33%), Postives = 71/150 (47.33%), Query Frame = 0 

Query: 17  GFAFVYFEDERDAEDAIRGLDNLPF-GY-------DRRRLSVEWARGERGRHRDGSKSMA 76
           GF F+ F  ++ A + I+ L+     GY       D+   +V+     R    +  +S+ 
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIK 784

Query: 77  N-----QRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRI-------RRNFAFVQFE 136
           +      +P+  + + N  P  + +++I + F  YG++ +VRI        R F FV+F 
Sbjct: 785 SNGGQPNKPSSKIIIKNL-PFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFL 844

Query: 137 TQEDATKALECTHMSKILDRVVSVEYALRD 147
           T+E+A  A+E    S    R + ++YA +D
Sbjct: 845 TEEEAKNAMEALGNSHFYGRHLVLQYAEQD 873

[Close]
BLAST of Cla97C05G080700 vs. TAIR10
Match: AT3G61860.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 227.6 bits (579), Expect = 7.7e-60
Identity = 113/147 (76.87%), Postives = 127/147 (86.39%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHRDGSKSMANQRPTKT 75
           +G+AFVYFEDERDAEDAIR LDN PFGY++RRLSVEWA+GERGR R  +K+ +N +PTKT
Sbjct: 35  SGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLKPTKT 94

Query: 76  LFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILD 135
           LFVINFDPIRT+  DIE+HFEPYGKV NVRIRRNF+FVQFETQEDATKALE T  SKILD
Sbjct: 95  LFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILD 154

Query: 136 RVVSVEYALRDDGERGD-PFDESPRRA 162
           RVVSVEYAL+DD ER D     SPRR+
Sbjct: 155 RVVSVEYALKDDDERDDRNGGRSPRRS 181

[Close]
BLAST of Cla97C05G080700 vs. TAIR10
Match: AT2G46610.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 219.2 bits (557), Expect = 2.7e-57
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWAR---GERGRHRDGSKSMANQRP 75
           +G+AFVYFEDERDAEDAIR  DN  FGY RR+LSVEWA+   GERG+ RDG K+++NQRP
Sbjct: 35  SGYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAKDFQGERGKPRDG-KAVSNQRP 94

Query: 76  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 135
           TKTLFVINFDPIRTR RD+ERHFEPYGKVLNVR+RRNFAFVQF TQEDATKAL+ TH SK
Sbjct: 95  TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 154

Query: 136 ILDRVVSVEYALRDDGERGD 153
           +LD+VVSVEYALR+ GER D
Sbjct: 155 LLDKVVSVEYALREAGERED 173

[Close]
BLAST of Cla97C05G080700 vs. TAIR10
Match: AT5G52040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 187.2 bits (474), Expect = 1.2e-47
Identity = 90/148 (60.81%), Postives = 112/148 (75.68%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGER---GRHRDGSKSMANQRP 75
           AGFAFVY EDERDAEDAIR LD   +G   RRL VEW + +R   GR     +S +  RP
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSSSGLRP 94

Query: 76  TKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSK 135
           +KTLFVINFD   TR RD+ERHFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ T+ SK
Sbjct: 95  SKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSK 154

Query: 136 ILDRVVSVEYALRDDGERGDPFDESPRR 161
           ++D+V+SVEYA++DD  RG+ +    RR
Sbjct: 155 LMDKVISVEYAVKDDDSRGNGYSPERRR 182

[Close]
BLAST of Cla97C05G080700 vs. TAIR10
Match: AT4G25500.1 (arginine/serine-rich splicing factor 35)

HSP 1 Score: 178.7 bits (452), Expect = 4.1e-45
Identity = 88/149 (59.06%), Postives = 108/149 (72.48%), Query Frame = 0 

Query: 16  AGFAFVYFEDERDAEDAIRGLDNLPFGYDRRRLSVEWARGERGRHR----DGSKSMANQR 75
           AGFAFVY EDERDAEDAIR LD   FG   RRL VEW + ERG  +             R
Sbjct: 35  AGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKXXXXXXXXXXXXXR 94

Query: 76  PTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMS 135
           P+KTLFVINFD   TR RD+E+HFEPYGK++NVRIRRNFAF+Q+E QEDAT+AL+ ++ S
Sbjct: 95  PSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNS 154

Query: 136 KILDRVVSVEYALRDDGERGDPFDESPRR 161
           K++D+V+SVEYA++DD  RG+      RR
Sbjct: 155 KLMDKVISVEYAVKDDDARGNGHSPERRR 183

[Close]
BLAST of Cla97C05G080700 vs. TAIR10
Match: AT3G53500.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain)

HSP 1 Score: 46.6 bits (109), Expect = 2.4e-05
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 0 

Query: 85  RTRVRDIERHFEPYGKVLNVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYA- 144
           RTR RD+ER F  YG+V +V ++R++AFV+F    DA  A             ++VE + 
Sbjct: 21  RTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80

Query: 145 -----LRDDGERGDP 154
                 RD+G RG P
Sbjct: 81  GAPRGSRDNGSRGPP 95

The following BLAST results are available for this feature:
BLAST of Cla97C05G080700 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011650665.11.2e-9097.86PREDICTED: serine/arginine-rich splicing factor RS31 isoform X3 [Cucumis sativus... [more]
XP_022147392.11.1e-8896.43serine/arginine-rich splicing factor RS31-like isoform X2 [Momordica charantia][more]
XP_022924569.11.8e-8391.67serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita moschata][more]
XP_023527372.17.0e-8391.07serine/arginine-rich splicing factor RS31-like isoform X2 [Cucurbita pepo subsp.... [more]
XP_022979304.11.5e-8291.07serine/arginine-rich splicing factor RS31A-like isoform X2 [Cucurbita maxima][more]
BLAST of Cla97C05G080700 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DTR0|A0A1S4DTR0_CUCME7.8e-9197.86serine/arginine-rich splicing factor RS31-like isoform X2 OS=Cucumis melo OX=365... [more]
tr|A0A1S3AUZ7|A0A1S3AUZ7_CUCME6.6e-8298.17serine/arginine-rich splicing factor RS31-like isoform X1 OS=Cucumis melo OX=365... [more]
tr|A0A0A0L8H4|A0A0A0L8H4_CUCSA6.6e-8298.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119350 PE=4 SV=1[more]
tr|A0A1U7ZW00|A0A1U7ZW00_NELNU1.6e-7287.04serine/arginine-rich splicing factor RS31-like isoform X3 OS=Nelumbo nucifera OX... [more]
tr|I1KHT1|I1KHT1_SOYBN1.4e-7181.82Uncharacterized protein OS=Glycine max OX=3847 GN=100801043 PE=4 SV=2[more]
BLAST of Cla97C05G080700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P92964|SRS31_ARATH1.4e-5876.87Serine/arginine-rich splicing factor RS31 OS=Arabidopsis thaliana OX=3702 GN=RS3... [more]
sp|Q9ZPX8|RS31A_ARATH4.9e-5678.57Serine/arginine-rich splicing factor RS31A OS=Arabidopsis thaliana OX=3702 GN=RS... [more]
sp|P92966|SRS41_ARATH2.1e-4660.81Serine/arginine-rich splicing factor RS41 OS=Arabidopsis thaliana OX=3702 GN=RS4... [more]
sp|P92965|RS40_ARATH7.4e-4459.06Serine/arginine-rich splicing factor RS40 OS=Arabidopsis thaliana OX=3702 GN=RS4... [more]
sp|Q54PB2|MRD1_DICDI8.0e-0625.33Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=... [more]
BLAST of Cla97C05G080700 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G61860.17.7e-6076.87RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G46610.12.7e-5778.57RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G52040.21.2e-4760.81RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT4G25500.14.1e-4559.06arginine/serine-rich splicing factor 35[more]
AT3G53500.22.4e-0537.33RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR029536RS31
IPR029537RSP31/31A/40/41
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
biological_process GO:0018149 peptide cross-linking
biological_process GO:0045292 mRNA cis splicing, via spliceosome
biological_process GO:0000381 regulation of alternative mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G080700.1Cla97C05G080700.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 75..141
e-value: 3.3E-17
score: 73.2
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 16..41
e-value: 5.8E-5
score: 22.7
coord: 76..138
e-value: 2.6E-12
score: 46.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 1..55
score: 9.814
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 74..145
score: 15.221
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 10..66
e-value: 1.2E-8
score: 37.2
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3DG3DSA:3.30.70.330coord: 67..153
e-value: 1.3E-19
score: 72.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..219
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..233
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..162
NoneNo IPR availableCDDcd12466RRM2_AtRSp31_likecoord: 75..144
e-value: 7.06067E-41
score: 135.369
IPR029537Arginine/serine-rich-splicing factor RSP31/31A/40/41PANTHERPTHR44257FAMILY NOT NAMEDcoord: 6..233
IPR029536Serine/arginine-rich splicing factor RS31PANTHERPTHR44257:SF3SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATEDcoord: 6..233
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 15..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G080700MELO3C006002Melon (DHL92) v3.5.1mewmbB434
Cla97C05G080700Cucsa.259460Cucumber (Gy14) v1cgywmbB452
Cla97C05G080700CmaCh00G005870Cucurbita maxima (Rimu)cmawmbB012
Cla97C05G080700CmaCh14G021260Cucurbita maxima (Rimu)cmawmbB263
Cla97C05G080700CmoCh14G021870Cucurbita moschata (Rifu)cmowmbB243
Cla97C05G080700MELO3C006002.2Melon (DHL92) v3.6.1medwmbB423
Cla97C05G080700Carg25710Silver-seed gourdcarwmbB0130
Cla97C05G080700Carg20910Silver-seed gourdcarwmbB1047
Cla97C05G080700Bhi01G000378Wax gourdwgowmbB191
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G080700Watermelon (97103) v2wmbwmbB016
Cla97C05G080700Cucumber (Gy14) v2cgybwmbB196
Cla97C05G080700Cucumber (Gy14) v1cgywmbB381
Cla97C05G080700Cucurbita maxima (Rimu)cmawmbB859
Cla97C05G080700Cucurbita maxima (Rimu)cmawmbB862
Cla97C05G080700Cucurbita moschata (Rifu)cmowmbB625
Cla97C05G080700Cucurbita moschata (Rifu)cmowmbB833
Cla97C05G080700Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G080700Wild cucumber (PI 183967)cpiwmbB399
Cla97C05G080700Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G080700Cucumber (Chinese Long) v3cucwmbB395
Cla97C05G080700Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G080700Cucumber (Chinese Long) v2cuwmbB381
Cla97C05G080700Bottle gourd (USVL1VR-Ls)lsiwmbB333
Cla97C05G080700Melon (DHL92) v3.6.1medwmbB024
Cla97C05G080700Melon (DHL92) v3.5.1mewmbB027
Cla97C05G080700Watermelon (Charleston Gray)wcgwmbB105
Cla97C05G080700Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G080700Watermelon (97103) v1wmwmbB206
Cla97C05G080700Watermelon (97103) v1wmwmbB262
Cla97C05G080700Wax gourdwgowmbB082