Cla97C05G080620 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G080620
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Mitochondrial glycoprotein
Location	Cla97Chr05 : 642477 .. 642951 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGGTATGATTTCCACTACTTTGCCCTCTGTTTGAATTAGAGTTTTAACTGTATGCAATCGCCAAACCCTAGAATTAGGATTTTAAGCTATGCGAATGTCGTCTGTTCGTCTTACTTGGCTAATTGTTTGTTTATTTATTCTATTATCGCAGAAAGTGAGCTCTCCTTCTCCCTTTTCTTTCATTAAAGGCGCACTAGACGGCAGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

mRNA sequence

ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

Coding sequence (CDS)

ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

Protein sequence

MLKKAIGVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLDSRSPECRRLRRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ

Homology

[Close]

BLAST of Cla97C05G080620 vs. NCBI nr
Match: XP_022992760.1 (uncharacterized protein At2g39795, mitochondrial [Cucurbita maxima])

HSP 1 Score: 77.4 bits (189), Expect = 2.7e-11
Identity = 54/110 (49.09%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRL- 60
           MLKK   V A     S  P L+AT RHSTTV++AVNSL L S KEHYL+ SR     ++ 
Sbjct: 1   MLKKVTAVAAVALRGSHRPSLMATCRHSTTVSTAVNSLLLRSLKEHYLEISRMTPPPKVS 60

Query: 61  --------------RRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ 91
                           PV+TR+YG  E+ VSVM LANIV  GGGDDG D+
Sbjct: 61  PPSSFSIIKGALDGNGPVLTRSYGNEEINVSVMRLANIVPGGGGDDGDDE 110

[Close]

BLAST of Cla97C05G080620 vs. NCBI nr
Match: XP_022938797.1 (uncharacterized protein At2g39795, mitochondrial [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 8.0e-11
Identity = 53/110 (48.18%), Postives = 64/110 (58.18%), Query Frame = 0


Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRL- 60
           MLKK   V A     S  P L+AT RHST+V++AVNSL L S KEHYL+ SR     ++ 
Sbjct: 1   MLKKVTAVAAVALRGSHRPSLMATCRHSTSVSTAVNSLLLRSLKEHYLEISRMTPPPKVS 60

Query: 61  --------------RRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ 91
                           PV+TR+YG  E+ VSVM LANIV  GGGDDG D+
Sbjct: 61  PPSSFSIIKGALDGNGPVLTRSYGNEEINVSVMRLANIVPGGGGDDGDDE 110

[Close]

BLAST of Cla97C05G080620 vs. NCBI nr
Match: XP_023549717.1 (uncharacterized protein At2g39795, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 6.8e-10
Identity = 52/110 (47.27%), Postives = 63/110 (57.27%), Query Frame = 0


Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRL- 60
           MLKK   V A     S  P L+AT R ST+V++AVNSL L S KEHYL+ SR     ++ 
Sbjct: 1   MLKKVTAVAAVALRGSRRPSLMATCRRSTSVSTAVNSLLLRSLKEHYLEISRMTPPPKVS 60

Query: 61  --------------RRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ 91
                           PV+TR+YG  E+ VSVM LANIV  GGGDDG D+
Sbjct: 61  PPSSFSIIKGALDGNGPVLTRSYGNEEINVSVMRLANIVPGGGGDDGDDE 110

[Close]

BLAST of Cla97C05G080620 vs. NCBI nr
Match: XP_022134253.1 (uncharacterized protein At2g39795, mitochondrial [Momordica charantia])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 44/100 (44.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 1   MLKKAIGVTADS-----PPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRL 60
           M+KK I V A++      P  +    RHST+V+SAVNSL L S KEHYL+ SR     ++
Sbjct: 1   MMKKLIAVAAEALQSRRRPSLMTTCRRHSTSVSSAVNSLLLRSLKEHYLEISRMTPPPKV 60

Query: 61  ---------------RRPVVTRNYGEVEVYVSVMPLANIV 80
                            PV+TRN+GE EV +SVM LANIV
Sbjct: 61  SPPSPFSIIKGALDSNGPVLTRNFGEEEVNISVMRLANIV 100

[Close]

BLAST of Cla97C05G080620 vs. NCBI nr
Match: OVA07191.1 (Mitochondrial glycoprotein [Macleaya cordata])

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-06
Identity = 41/95 (43.16%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 14  PPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD----------------SRSPECRRLRRP 73
           P W + T RHST+V+SAVNS  L S KEHYL+                S          P
Sbjct: 16  PCWRMITNRHSTSVSSAVNSFLLRSLKEHYLEVSKMTPPPKVNPPSSFSIVKGALESHGP 75

Query: 74  VVTRNYGEVEVYVSVMPLANIVLEGGGD--DGIDQ 91
           V+ R Y + E+ +SVM LANIV  GG D  DGI+Q
Sbjct: 76  VLKRTYNDEEITISVMRLANIVPGGGDDEEDGINQ 110

[Close]

BLAST of Cla97C05G080620 vs. TrEMBL
Match: tr|A0A200Q9R6|A0A200Q9R6_9MAGN (Mitochondrial glycoprotein OS=Macleaya cordata OX=56857 GN=BVC80_1289g116 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 41/95 (43.16%), Postives = 50/95 (52.63%), Query Frame = 0


Query: 14  PPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD----------------SRSPECRRLRRP 73
           P W + T RHST+V+SAVNS  L S KEHYL+                S          P
Sbjct: 16  PCWRMITNRHSTSVSSAVNSFLLRSLKEHYLEVSKMTPPPKVNPPSSFSIVKGALESHGP 75

Query: 74  VVTRNYGEVEVYVSVMPLANIVLEGGGD--DGIDQ 91
           V+ R Y + E+ +SVM LANIV  GG D  DGI+Q
Sbjct: 76  VLKRTYNDEEITISVMRLANIVPGGGDDEEDGINQ 110

[Close]

BLAST of Cla97C05G080620 vs. TrEMBL
Match: tr|A0A1S3Z5P8|A0A1S3Z5P8_TOBAC (mitochondrial acidic protein MAM33-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107783267 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR- 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+ S+     ++  
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  --------------RPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 91
                          PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

[Close]

BLAST of Cla97C05G080620 vs. TrEMBL
Match: tr|A0A1S3Z5V2|A0A1S3Z5V2_TOBAC (uncharacterized protein LOC107783267 isoform X2 OS=Nicotiana tabacum OX=4097 GN=LOC107783267 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR- 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+ S+     ++  
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  --------------RPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 91
                          PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

[Close]

BLAST of Cla97C05G080620 vs. TrEMBL
Match: tr|A0A1U7V5U5|A0A1U7V5U5_NICSY (mitochondrial acidic protein MAM33 isoform X1 OS=Nicotiana sylvestris OX=4096 GN=LOC104210407 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR- 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+ S+     ++  
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  --------------RPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 91
                          PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

[Close]

BLAST of Cla97C05G080620 vs. TrEMBL
Match: tr|A0A1U7V789|A0A1U7V789_NICSY (uncharacterized protein LOC104210407 isoform X2 OS=Nicotiana sylvestris OX=4096 GN=LOC104210407 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.9e-06
Identity = 42/112 (37.50%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR- 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+ S+     ++  
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  --------------RPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 91
                          PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

The following BLAST results are available for this feature:

BLAST of Cla97C05G080620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022992760.1	2.7e-11	49.09	uncharacterized protein At2g39795, mitochondrial [Cucurbita maxima]	[more]
XP_022938797.1	8.0e-11	48.18	uncharacterized protein At2g39795, mitochondrial [Cucurbita moschata]	[more]
XP_023549717.1	6.8e-10	47.27	uncharacterized protein At2g39795, mitochondrial [Cucurbita pepo subsp. pepo]	[more]
XP_022134253.1	2.0e-06	44.00	uncharacterized protein At2g39795, mitochondrial [Momordica charantia]	[more]
OVA07191.1	3.5e-06	43.16	Mitochondrial glycoprotein [Macleaya cordata]	[more]

BLAST of Cla97C05G080620 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A200Q9R6\|A0A200Q9R6_9MAGN	2.3e-06	43.16	Mitochondrial glycoprotein OS=Macleaya cordata OX=56857 GN=BVC80_1289g116 PE=4 S...	[more]
tr\|A0A1S3Z5P8\|A0A1S3Z5P8_TOBAC	3.9e-06	37.50	mitochondrial acidic protein MAM33-like isoform X1 OS=Nicotiana tabacum OX=4097 ...	[more]
tr\|A0A1S3Z5V2\|A0A1S3Z5V2_TOBAC	3.9e-06	37.50	uncharacterized protein LOC107783267 isoform X2 OS=Nicotiana tabacum OX=4097 GN=...	[more]
tr\|A0A1U7V5U5\|A0A1U7V5U5_NICSY	3.9e-06	37.50	mitochondrial acidic protein MAM33 isoform X1 OS=Nicotiana sylvestris OX=4096 GN...	[more]
tr\|A0A1U7V789\|A0A1U7V789_NICSY	3.9e-06	37.50	uncharacterized protein LOC104210407 isoform X2 OS=Nicotiana sylvestris OX=4096 ...	[more]

BLAST of Cla97C05G080620 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G080620 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G080620.1	Cla97C05G080620.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G080620	Cla021124	Watermelon (97103) v1	wmwmbB206
Cla97C05G080620	ClCG05G000570	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G080620	Lsi05G021590	Bottle gourd (USVL1VR-Ls)	lsiwmbB333

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G080620	Silver-seed gourd	carwmbB0130
Cla97C05G080620	Silver-seed gourd	carwmbB1047
Cla97C05G080620	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G080620	Cucumber (Gy14) v1	cgywmbB381
Cla97C05G080620	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G080620	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G080620	Cucurbita maxima (Rimu)	cmawmbB862
Cla97C05G080620	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G080620	Cucurbita moschata (Rifu)	cmowmbB625
Cla97C05G080620	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G080620	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G080620	Wild cucumber (PI 183967)	cpiwmbB399
Cla97C05G080620	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G080620	Cucumber (Chinese Long) v3	cucwmbB395
Cla97C05G080620	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G080620	Cucumber (Chinese Long) v2	cuwmbB381
Cla97C05G080620	Melon (DHL92) v3.6.1	medwmbB024
Cla97C05G080620	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G080620	Melon (DHL92) v3.5.1	mewmbB027
Cla97C05G080620	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G080620	Watermelon (97103) v1	wmwmbB262
Cla97C05G080620	Wax gourd	wgowmbB191