ClCG05G000570 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G000570
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 692599 .. 693073 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGGTATGATTTCCACTACTTTGCCCTCTGTTTGAATTAGAGTTTTAACTGTATGCAATCGCCAAACCCTAGAATTAGGATTTTAAGCTATGCGAATGTCGTCTGTTCGTCTTACTTGGCTAATTGTTTGTTTATTTATTCTATTATCGCAGAAAGTGAGCTCTCCTTCTCCCTTTTCTTTCATTAAAGGCGCACTAGACGGCAGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

mRNA sequence

ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGGTATGATTTCCACTACTTTGCCCTCTGCGCACTAGACGGCAGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

Coding sequence (CDS)

ATGTTGAAGAAAGCGATTGGCGTCACTGCGGACTCGCCGCCGCCGTGGCTCATAGCTACTTACCGCCATTCGACCACTGTGACCTCCGCCGTCAACTCGTTGCACCTCGGATCCCCCAAAGAACACTATCTCGACTCGAGGTCTCCAGAATGCCGACGTCTTCGGTATGATTTCCACTACTTTGCCCTCTGCGCACTAGACGGCAGTCGTCCGGTGGTTACTAGGAACTACGGTGAAGTAGAGGTTTACGTTTCGGTAATGCCATTGGCCAATATTGTTCTGGAAGGTGGTGGAGACGATGGAATTGACCAATAA

Protein sequence

MLKKAIGVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLDSRSPECRRLRYDFHYFALCALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ
Homology
[Close]
BLAST of ClCG05G000570 vs. TrEMBL
Match: A0A0A0KCG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.3e-11
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR 60
           MLKK +  +A        P L+ T RHST+ +SAVNS  L S KEHYL+ +R     ++ 
Sbjct: 1   MLKKMMAASAVALRSGTRPSLMFTCRHSTSASSAVNSFLLRSLKEHYLEITRMAAPPKVS 60

Query: 61  YDFHYFALC-ALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ 105
               +  +  ALDG+ PV+T+NYG+ E+ +SVM LANIV  GGG D  D+
Sbjct: 61  PPSSFSIIVGALDGNGPVLTKNYGKEEINISVMRLANIVRGGGGGDDDDE 110

[Close]
BLAST of ClCG05G000570 vs. TrEMBL
Match: A0A0J8BEC2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092920 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.6e-08
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 1   MLKKAIGVTAD--SPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLRYD 60
           ML+K I   A   +  PW   + RHS+ V+SAVNS+ L S KEHYL+ S+     ++   
Sbjct: 1   MLRKTIAAIAGGCAHQPWSRISQRHSSVVSSAVNSMLLRSLKEHYLEVSKMAPPPKVNPP 60

Query: 61  FHY-FALCALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGID 104
             +     ALD + PV+TR Y   E+ +SVM LANIV + G +D  D
Sbjct: 61  AEFTIVKGALDSNGPVLTRCYKNEEISISVMRLANIVSDEGDNDNDD 107

[Close]
BLAST of ClCG05G000570 vs. TrEMBL
Match: B9SK00_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0720070 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 1 

Query: 14  PPW-LIATYRHSTT--VTSAVNSLHLGSPKEHYLD--SRSPECRRLRYDFHYFALCALDG 73
           P W +I+T R STT  ++SAV+S+ L S K+HYL+    +P  +            ALDG
Sbjct: 11  PIWRMISTRRSSTTNNMSSAVDSMLLRSLKDHYLEVAKMNPPPKVSPPSAFTILKGALDG 70

Query: 74  SRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGID 104
           + PV+TR YG  E+ +SVM LANI+  GGG+D  D
Sbjct: 71  NGPVLTRTYGNEEINISVMRLANIIPGGGGEDDDD 105

[Close]
BLAST of ClCG05G000570 vs. TrEMBL
Match: M5WIP3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010810mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-07
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1 

Query: 1   MLKKAIGVTADSPP----PWLIATYRHSTTVT--SAVNSLHLGSPKEHYLD--SRSPECR 60
           M +KAI  TA        PW    + HST V+   AVNS+ L S KEHYLD    +P  +
Sbjct: 1   MWRKAIATTARGVGALHHPWRTIAHGHSTAVSPSDAVNSILLRSLKEHYLDVTKMNPPPK 60

Query: 61  RLRYDFHYFALCALDGSRPVVTRNYGEVEVYVSVMPLANIVL-EGGGDDGID 104
                       +LDG+ P + R +G+ E+ +SVM LANIV  +GG DDG D
Sbjct: 61  INPPSPFTVVQGSLDGNGPALKRTFGDEEITISVMRLANIVPGDGGEDDGAD 112

[Close]
BLAST of ClCG05G000570 vs. TrEMBL
Match: A0A0K9QXE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137200 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.8e-07
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1 

Query: 1   MLKKAIGVTADS--PPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLRYD 60
           ML++AI   A      PW + + RHS+ V+SAVN++ L S K+HY++ S+     ++   
Sbjct: 1   MLRRAIAAVAGGGVTQPWRMTSRRHSSVVSSAVNNMLLRSLKDHYVEVSKMTPPPKVSPP 60

Query: 61  FHYFALC-ALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDD 101
             +  L  ALD + PV+ R+Y   E+ +SVM LANIV +  G+D
Sbjct: 61  ADFTILKGALDSNGPVLKRSYNNEEISISVMRLANIVEDEDGND 104

[Close]
BLAST of ClCG05G000570 vs. NCBI nr
Match: gi|659113531|ref|XP_008456624.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1 

Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR 60
           ML K +  TA        P L+ T RHST+ +SAVNS  L S KEHYL+ +R P   ++ 
Sbjct: 1   MLNKLMAATAVALRSGSRPSLMVTCRHSTSASSAVNSFLLRSLKEHYLEITRMPAPPKVS 60

Query: 61  YDFHYFALC-ALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGID 104
               +  +  ALDG  PV+T+NYG+ EV +SVM L+NIV  GGGD+  D
Sbjct: 61  PPSSFSIITGALDGHGPVLTKNYGKEEVNISVMRLSNIVRGGGGDNDDD 109

[Close]
BLAST of ClCG05G000570 vs. NCBI nr
Match: gi|449446313|ref|XP_004140916.1| (PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-11
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 1 

Query: 1   MLKKAIGVTA----DSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD-SRSPECRRLR 60
           MLKK +  +A        P L+ T RHST+ +SAVNS  L S KEHYL+ +R     ++ 
Sbjct: 1   MLKKMMAASAVALRSGTRPSLMFTCRHSTSASSAVNSFLLRSLKEHYLEITRMAAPPKVS 60

Query: 61  YDFHYFALC-ALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGDDGIDQ 105
               +  +  ALDG+ PV+T+NYG+ E+ +SVM LANIV  GGG D  D+
Sbjct: 61  PPSSFSIIVGALDGNGPVLTKNYGKEEINISVMRLANIVRGGGGGDDDDE 110

[Close]
BLAST of ClCG05G000570 vs. NCBI nr
Match: gi|698521607|ref|XP_009757610.1| (PREDICTED: uncharacterized protein LOC104210407 isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1 

Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD--SRSPECRRLR 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+    +P  +   
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  YDFHYFALCALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 105
                    ALD   PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

[Close]
BLAST of ClCG05G000570 vs. NCBI nr
Match: gi|698521605|ref|XP_009757609.1| (PREDICTED: mitochondrial acidic protein MAM33 isoform X1 [Nicotiana sylvestris])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 45/112 (40.18%), Postives = 62/112 (55.36%), Query Frame = 1 

Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD--SRSPECRRLR 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+    +P  +   
Sbjct: 1   MLRKALTCAGSALQQQQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 60

Query: 61  YDFHYFALCALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGGD---DGIDQ 105
                    ALD   PV+ R +G  E+ +SVM LANI+  GGGD   DGI+Q
Sbjct: 61  PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGDEEEDGINQ 112

[Close]
BLAST of ClCG05G000570 vs. NCBI nr
Match: gi|697148144|ref|XP_009628248.1| (PREDICTED: mitochondrial acidic protein MAM33 [Nicotiana tomentosiformis])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 1 

Query: 1   MLKKAI---GVTADSPPPWLIATYRHSTTVTSAVNSLHLGSPKEHYLD--SRSPECRRLR 60
           ML+KA+   G       PW    +R S++V+SAVNS+ L S K+HYL+    +P  +   
Sbjct: 41  MLRKALTCAGSALQQRQPWRTIAWRRSSSVSSAVNSIILRSLKDHYLEVSKMTPPPKVSP 100

Query: 61  YDFHYFALCALDGSRPVVTRNYGEVEVYVSVMPLANIVLEGGG---DDGIDQ 105
                    ALD   PV+ R +G  E+ +SVM LANI+  GGG   +DGI+Q
Sbjct: 101 PTPFTVVKGALDQGGPVLRRTHGNEEISISVMRLANIIPGGGGAEEEDGINQ 152

The following BLAST results are available for this feature:
BLAST of ClCG05G000570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCG3_CUCSA4.3e-1144.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046350 PE=4 SV=1[more]
A0A0J8BEC2_BETVU7.6e-0841.12Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g092920 PE=4 S... [more]
B9SK00_RICCO1.3e-0744.21Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0720070 PE=4 SV=1[more]
M5WIP3_PRUPE2.9e-0741.07Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010810mg PE=4 SV=1[more]
A0A0K9QXE1_SPIOL3.8e-0738.46Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137200 PE=4 SV=1[more]
BLAST of ClCG05G000570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113531|ref|XP_008456624.1|1.6e-1145.87PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis melo][more]
gi|449446313|ref|XP_004140916.1|6.2e-1144.55PREDICTED: uncharacterized protein At2g39795, mitochondrial [Cucumis sativus][more]
gi|698521607|ref|XP_009757610.1|2.9e-0840.18PREDICTED: uncharacterized protein LOC104210407 isoform X2 [Nicotiana sylvestris... [more]
gi|698521605|ref|XP_009757609.1|2.9e-0840.18PREDICTED: mitochondrial acidic protein MAM33 isoform X1 [Nicotiana sylvestris][more]
gi|697148144|ref|XP_009628248.1|1.1e-0739.29PREDICTED: mitochondrial acidic protein MAM33 [Nicotiana tomentosiformis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005759 mitochondrial matrix
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G000570.1ClCG05G000570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G000570Cla021124Watermelon (97103) v1wcgwmB286
ClCG05G000570Cla97C05G080620Watermelon (97103) v2wcgwmbB229
ClCG05G000570Lsi05G021590Bottle gourd (USVL1VR-Ls)lsiwcgB335
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G000570Cucurbita pepo (Zucchini)cpewcgB559
ClCG05G000570Cucurbita pepo (Zucchini)cpewcgB677
ClCG05G000570Cucurbita pepo (Zucchini)cpewcgB787
ClCG05G000570Bottle gourd (USVL1VR-Ls)lsiwcgB018
ClCG05G000570Cucumber (Gy14) v2cgybwcgB203
ClCG05G000570Melon (DHL92) v3.6.1medwcgB416
ClCG05G000570Silver-seed gourdcarwcgB0122
ClCG05G000570Silver-seed gourdcarwcgB0964
ClCG05G000570Silver-seed gourdcarwcgB0968
ClCG05G000570Cucumber (Chinese Long) v3cucwcgB225
ClCG05G000570Cucumber (Chinese Long) v3cucwcgB413
ClCG05G000570Watermelon (97103) v2wcgwmbB210
ClCG05G000570Wax gourdwcgwgoB420
ClCG05G000570Wax gourdwcgwgoB439
ClCG05G000570Watermelon (Charleston Gray)wcgwcgB094
ClCG05G000570Cucumber (Gy14) v1cgywcgB377
ClCG05G000570Cucumber (Gy14) v1cgywcgB451
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB006
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB233
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB295
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB563
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB738
ClCG05G000570Cucurbita maxima (Rimu)cmawcgB742
ClCG05G000570Cucurbita moschata (Rifu)cmowcgB219
ClCG05G000570Cucurbita moschata (Rifu)cmowcgB743
ClCG05G000570Wild cucumber (PI 183967)cpiwcgB226
ClCG05G000570Cucumber (Chinese Long) v2cuwcgB222
ClCG05G000570Cucumber (Chinese Long) v2cuwcgB392
ClCG05G000570Melon (DHL92) v3.5.1mewcgB030
ClCG05G000570Melon (DHL92) v3.5.1mewcgB427
ClCG05G000570Watermelon (97103) v1wcgwmB295