Cla97C04G074330 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C04G074330
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transmembrane protein, putative
Location	Cla97Chr04 : 21984688 .. 21985075 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTATATATAATATATATACACTGTATATGAGGGAAGATGGTCACTTTAATTTCTCTCTTTGGTCTCTCTTGTGATTTATATATAATTTGATTTTATGGGGGCTTTTTAATGACAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA

mRNA sequence

ATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA

Coding sequence (CDS)

ATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA

Protein sequence

MVFWNWRCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

Homology

[Close]

BLAST of Cla97C04G074330 vs. NCBI nr
Match: KGN54310.1 (hypothetical protein Csa_4G303090 [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGI 60
          M F N++CLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFAT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY 91
          ECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]

BLAST of Cla97C04G074330 vs. NCBI nr
Match: PRQ43088.1 (hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis])

HSP 1 Score: 74.3 bits (181), Expect = 2.3e-10
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 9  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIG 68
          L L  LLVA +    + VEA  RP S+F         +GY  SK+F T+GI C+CCDG+G
Sbjct: 11 LALVILLVACASEKSLAVEA--RPLSLF-------SQQGY--SKVFGTLGIACECCDGVG 70

Query: 69 GKCSTEFTTSCSNLHCSPWKQY 91
          G+C + +T SCS+L C PWKQ+
Sbjct: 71 GECKSRWTGSCSSLKCLPWKQH 81

[Close]

BLAST of Cla97C04G074330 vs. NCBI nr
Match: KJB36657.1 (hypothetical protein B456_006G169100 [Gossypium raimondii])

HSP 1 Score: 73.6 bits (179), Expect = 4.0e-10
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQVPMVSAARPFSILPDQQ--------RYSKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of Cla97C04G074330 vs. NCBI nr
Match: PPR86503.1 (hypothetical protein GOBAR_AA34185 [Gossypium barbadense])

HSP 1 Score: 73.2 bits (178), Expect = 5.2e-10
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + + + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQIPMVSAARPFSILPDQQ--------RYSKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of Cla97C04G074330 vs. NCBI nr
Match: BAT85981.1 (hypothetical protein VIGAN_04358900 [Vigna angularis var. angularis])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 1  MVFWNWRCLFLSFLLVAVSFR--NGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+ +     N   VEA+     +  I   +  FKGY   ++++T+G
Sbjct: 1  MLTRNWFMLFFACLLIILPMLSVNPNTVEAT----QVLTINRNRSNFKGYTKRQVYSTLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + C+CCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 MVCRCCDGKGGECTTTWDDACSNLSCHPWK 86

[Close]

BLAST of Cla97C04G074330 vs. TrEMBL
Match: tr|A0A0A0KXD1|A0A0A0KXD1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-34
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MVFWNWRCLFLSFLLVAVSFRNGVI-VEASSRPFSIFPILEPKKGFKGYYNSKIFATVGI 60
          M F N++CLFL FLL  V FRNGVI VE SSRPFSI PIL+ +KGFKGYY+S+IFAT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY 91
          ECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]

BLAST of Cla97C04G074330 vs. TrEMBL
Match: tr|A0A2P6R9H6|A0A2P6R9H6_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464651 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 9  LFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIG 68
          L L  LLVA +    + VEA  RP S+F         +GY  SK+F T+GI C+CCDG+G
Sbjct: 11 LALVILLVACASEKSLAVEA--RPLSLF-------SQQGY--SKVFGTLGIACECCDGVG 70

Query: 69 GKCSTEFTTSCSNLHCSPWKQY 91
          G+C + +T SCS+L C PWKQ+
Sbjct: 71 GECKSRWTGSCSSLKCLPWKQH 81

[Close]

BLAST of Cla97C04G074330 vs. TrEMBL
Match: tr|A0A0D2NTZ8|A0A0D2NTZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G169100 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-10
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQVPMVSAARPFSILPDQQ--------RYSKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of Cla97C04G074330 vs. TrEMBL
Match: tr|A0A2P5W5Y8|A0A2P5W5Y8_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34185 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-10
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + + + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQIPMVSAARPFSILPDQQ--------RYSKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of Cla97C04G074330 vs. TrEMBL
Match: tr|A0A0S3RZH2|A0A0S3RZH2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G358900 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-10
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 1  MVFWNWRCLFLSFLLVAVSFR--NGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+ +     N   VEA+     +  I   +  FKGY   ++++T+G
Sbjct: 1  MLTRNWFMLFFACLLIILPMLSVNPNTVEAT----QVLTINRNRSNFKGYTKRQVYSTLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + C+CCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 MVCRCCDGKGGECTTTWDDACSNLSCHPWK 86

The following BLAST results are available for this feature:

BLAST of Cla97C04G074330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54310.1	3.9e-34	80.22	hypothetical protein Csa_4G303090 [Cucumis sativus]	[more]
PRQ43088.1	2.3e-10	47.56	hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis]	[more]
KJB36657.1	4.0e-10	48.72	hypothetical protein B456_006G169100 [Gossypium raimondii]	[more]
PPR86503.1	5.2e-10	47.44	hypothetical protein GOBAR_AA34185 [Gossypium barbadense]	[more]
BAT85981.1	1.2e-09	38.89	hypothetical protein VIGAN_04358900 [Vigna angularis var. angularis]	[more]

BLAST of Cla97C04G074330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KXD1\|A0A0A0KXD1_CUCSA	2.6e-34	80.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1	[more]
tr\|A0A2P6R9H6\|A0A2P6R9H6_ROSCH	1.5e-10	47.56	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464651 PE=4...	[more]
tr\|A0A0D2NTZ8\|A0A0D2NTZ8_GOSRA	2.6e-10	48.72	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_006G169100 PE=4 ...	[more]
tr\|A0A2P5W5Y8\|A0A2P5W5Y8_GOSBA	3.4e-10	47.44	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA34185 PE=4 SV...	[more]
tr\|A0A0S3RZH2\|A0A0S3RZH2_PHAAN	7.6e-10	38.89	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G...	[more]

BLAST of Cla97C04G074330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C04G074330 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C04G074330.1	Cla97C04G074330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37078	FAMILY NOT NAMED	coord: 17..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C04G074330	Csa4G303090	Cucumber (Chinese Long) v2	cuwmbB298
Cla97C04G074330	ClCG04G007580	Watermelon (Charleston Gray)	wcgwmbB200
Cla97C04G074330	CsGy4G014600	Cucumber (Gy14) v2	cgybwmbB282
Cla97C04G074330	MELO3C033485.2	Melon (DHL92) v3.6.1	medwmbB532
Cla97C04G074330	CsaV3_4G025600	Cucumber (Chinese Long) v3	cucwmbB307

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C04G074330	Watermelon (97103) v2	wmbwmbB052
Cla97C04G074330	Watermelon (97103) v2	wmbwmbB126
Cla97C04G074330	Silver-seed gourd	carwmbB0090
Cla97C04G074330	Silver-seed gourd	carwmbB0168
Cla97C04G074330	Silver-seed gourd	carwmbB0583
Cla97C04G074330	Silver-seed gourd	carwmbB0609
Cla97C04G074330	Silver-seed gourd	carwmbB0695
Cla97C04G074330	Silver-seed gourd	carwmbB1054
Cla97C04G074330	Cucumber (Gy14) v2	cgybwmbB195
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB239
Cla97C04G074330	Cucumber (Gy14) v1	cgywmbB062
Cla97C04G074330	Cucumber (Gy14) v1	cgywmbB294
Cla97C04G074330	Cucumber (Gy14) v1	cgywmbB321
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB259
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB684
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB751
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB754
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB855
Cla97C04G074330	Cucurbita maxima (Rimu)	cmawmbB897
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB657
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB722
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB725
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB867
Cla97C04G074330	Cucurbita moschata (Rifu)	cmowmbB831
Cla97C04G074330	Wild cucumber (PI 183967)	cpiwmbB207
Cla97C04G074330	Wild cucumber (PI 183967)	cpiwmbB307
Cla97C04G074330	Wild cucumber (PI 183967)	cpiwmbB394
Cla97C04G074330	Cucumber (Chinese Long) v3	cucwmbB205
Cla97C04G074330	Cucumber (Chinese Long) v3	cucwmbB390
Cla97C04G074330	Cucumber (Chinese Long) v2	cuwmbB202
Cla97C04G074330	Cucumber (Chinese Long) v2	cuwmbB376
Cla97C04G074330	Bottle gourd (USVL1VR-Ls)	lsiwmbB140
Cla97C04G074330	Bottle gourd (USVL1VR-Ls)	lsiwmbB235
Cla97C04G074330	Melon (DHL92) v3.6.1	medwmbB318
Cla97C04G074330	Melon (DHL92) v3.5.1	mewmbB059
Cla97C04G074330	Melon (DHL92) v3.5.1	mewmbB330
Cla97C04G074330	Melon (DHL92) v3.5.1	mewmbB538
Cla97C04G074330	Watermelon (Charleston Gray)	wcgwmbB047
Cla97C04G074330	Watermelon (Charleston Gray)	wcgwmbB303
Cla97C04G074330	Watermelon (97103) v1	wmwmbB066
Cla97C04G074330	Watermelon (97103) v1	wmwmbB160
Cla97C04G074330	Watermelon (97103) v1	wmwmbB291
Cla97C04G074330	Wax gourd	wgowmbB035
Cla97C04G074330	Wax gourd	wgowmbB431