ClCG04G007580 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG04G007580
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr04 : 22608375 .. 22608952 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATAATAAAAATGCTACATTCATCTTCAAGTTTCTTCTTGTTTAATTTAAAGGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTATATATAATATATATACACTGTATATGAGGGAAGATGGTCACTTTAATTTCTCTCTTTGGTCTCTCTTGTGATTTATATATAATTTGATTTTATGGGGGCTTTTTAATGACAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGAATCCAATCTCTATTTCCTTCCTTGCAATTCTCTCTCTCTCTCTGTTTTTTTTCCCTTGTAAAATACAAATGAGATAATATGGAATACGAGTATTTGGTGATGACAATGATATTATATATAAAAC

mRNA sequence

CAATAATAAAAATGCTACATTCATCTTCAAGTTTCTTCTTGTTTAATTTAAAGGCTGTTTTTTGAGATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGAATCCAATCTCTATTTCCTTCCTTGCAATTCTCTCTCTCTCTCTGTTTTTTTTCCCTTGTAAAATACAAATGAGATAATATGGAATACGAGTATTTGGTGATGACAATGATATTATATATAAAAC

Coding sequence (CDS)

ATGGTTTTTTGGAATTGGAGGTGTTTGTTTCTGAGTTTTCTTCTGGTGGCTGTTTCTTTTAGAAATGGAGTTATTGTGGAAGCTAGTAGCAGACCCTTCTCAATCTTCCCAATACTAGAACCTAAAAAAGGTTTTAAGGGATATTATAATTCAAAGATTTTTGCAACAGTGGGAATTGAATGCAAGTGTTGTGATGGGATTGGAGGTAAATGTTCTACTGAGTTTACTACTTCTTGCTCTAATCTCCATTGTTCCCCTTGGAAACAATATTGA

Protein sequence

MVFWNWRCLFLSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY

Homology

[Close]

BLAST of ClCG04G007580 vs. TrEMBL
Match: A0A0A0KXD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 8.3e-35
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVSFRNGVIV-EASSRPFSIFPILEPKKGFKGYYNSKIFATVGI 60
          M F N++CLFL FLL  V FRNGVIV E SSRPFSI PIL+ +KGFKGYY+S+IFAT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY 91
          ECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]

BLAST of ClCG04G007580 vs. TrEMBL
Match: A0A0D2NTZ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169100 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-10
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQVPMVSAARPFSILPDQQRY--------SKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of ClCG04G007580 vs. TrEMBL
Match: A0A0S3RZH2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G358900 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVSFR--NGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+ +     N   VEA+     +  I   +  FKGY   ++++T+G
Sbjct: 1  MLTRNWFMLFFACLLIILPMLSVNPNTVEATQ----VLTINRNRSNFKGYTKRQVYSTLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + C+CCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 MVCRCCDGKGGECTTTWDDACSNLSCHPWK 86

[Close]

BLAST of ClCG04G007580 vs. TrEMBL
Match: V7D1S3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G238200g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-09
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVS--FRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+       N   VEA+     +  I      FKGY   ++++++G
Sbjct: 1  MLTHNWFMLFFACLLIIAPKLSLNPNTVEATR----VLTINRNTNHFKGYTKREVYSSLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + CKCCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 LVCKCCDGKGGECTTTWDDACSNLQCHPWK 86

[Close]

BLAST of ClCG04G007580 vs. TrEMBL
Match: A0A0B2SG43_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_048312 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-09
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1


Query: 46 KGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY 91
          +GY  SK FAT+G+ CKCCDG+GG C++ +T SCSNL CSPWK +
Sbjct: 40 QGY--SKFFATLGLVCKCCDGVGGACTSTWTESCSNLQCSPWKSH 82

[Close]

BLAST of ClCG04G007580 vs. NCBI nr
Match: gi|700199152|gb|KGN54310.1| (hypothetical protein Csa_4G303090 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 1.2e-34
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVSFRNGVIV-EASSRPFSIFPILEPKKGFKGYYNSKIFATVGI 60
          M F N++CLFL FLL  V FRNGVIV E SSRPFSI PIL+ +KGFKGYY+S+IFAT+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDGIGGKCSTEFTTSCSNLHCSPWKQY 91
          ECKCCD IGGKCSTEFTTSCSNLHCSPWKQY
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]

BLAST of ClCG04G007580 vs. NCBI nr
Match: gi|763769442|gb|KJB36657.1| (hypothetical protein B456_006G169100 [Gossypium raimondii])

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-10
Identity = 38/78 (48.72%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 11 LSFLLVAVSFRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGK 70
          L FLLV     + V + +++RPFSI P  +          SKIFAT+G+ CKCCDG GG+
Sbjct: 9  LLFLLVISVSSSQVPMVSAARPFSILPDQQRY--------SKIFATLGVVCKCCDGSGGE 68

Query: 71 CSTEFTTSCSNLHCSPWK 89
          CST +T  CS L C PWK
Sbjct: 69 CSTTWTQPCSKLKCLPWK 78

[Close]

BLAST of ClCG04G007580 vs. NCBI nr
Match: gi|965671374|dbj|BAT85981.1| (hypothetical protein VIGAN_04358900 [Vigna angularis var. angularis])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 35/90 (38.89%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVSFR--NGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+ +     N   VEA+     +  I   +  FKGY   ++++T+G
Sbjct: 1  MLTRNWFMLFFACLLIILPMLSVNPNTVEATQ----VLTINRNRSNFKGYTKRQVYSTLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + C+CCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 MVCRCCDGKGGECTTTWDDACSNLSCHPWK 86

[Close]

BLAST of ClCG04G007580 vs. NCBI nr
Match: gi|593800898|ref|XP_007163486.1| (hypothetical protein PHAVU_001G238200g [Phaseolus vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 1.7e-09
Identity = 35/90 (38.89%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MVFWNWRCLFLSFLLVAVS--FRNGVIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVG 60
          M+  NW  LF + LL+       N   VEA+     +  I      FKGY   ++++++G
Sbjct: 1  MLTHNWFMLFFACLLIIAPKLSLNPNTVEATR----VLTINRNTNHFKGYTKREVYSSLG 60

Query: 61 IECKCCDGIGGKCSTEFTTSCSNLHCSPWK 89
          + CKCCDG GG+C+T +  +CSNL C PWK
Sbjct: 61 LVCKCCDGKGGECTTTWDDACSNLQCHPWK 86

[Close]

BLAST of ClCG04G007580 vs. NCBI nr
Match: gi|357505737|ref|XP_003623157.1| (hypothetical protein MTR_7g065130 [Medicago truncatula])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1


Query: 24 VIVEASSRPFSIFPILEPKKGFKGYYNSKIFATVGIECKCCDGIGGKCSTEFTTSCSNLH 83
          ++V  S++P  I          +GY  SKIF T+G+ CKCCDGIGG C++ +T SC NL 
Sbjct: 15 MLVSVSNKPSFIEARTLSLNSNQGY--SKIFPTLGVVCKCCDGIGGTCTSTWTQSCKNLK 74

Query: 84 CSPWKQY 91
          CSPWK +
Sbjct: 75 CSPWKSH 79

The following BLAST results are available for this feature:

BLAST of ClCG04G007580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXD1_CUCSA	8.3e-35	80.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G303090 PE=4 SV=1	[more]
A0A0D2NTZ8_GOSRA	1.4e-10	48.72	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G169100 PE=4 SV=1	[more]
A0A0S3RZH2_PHAAN	1.9e-10	38.89	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G358900 PE=...	[more]
V7D1S3_PHAVU	1.2e-09	38.89	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G238200g PE=4 SV=1	[more]
A0A0B2SG43_GLYSO	1.6e-09	62.22	Uncharacterized protein OS=Glycine soja GN=glysoja_048312 PE=4 SV=1	[more]

BLAST of ClCG04G007580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199152\|gb\|KGN54310.1\|	1.2e-34	80.22	hypothetical protein Csa_4G303090 [Cucumis sativus]	[more]
gi\|763769442\|gb\|KJB36657.1\|	2.0e-10	48.72	hypothetical protein B456_006G169100 [Gossypium raimondii]	[more]
gi\|965671374\|dbj\|BAT85981.1\|	2.7e-10	38.89	hypothetical protein VIGAN_04358900 [Vigna angularis var. angularis]	[more]
gi\|593800898\|ref\|XP_007163486.1\|	1.7e-09	38.89	hypothetical protein PHAVU_001G238200g [Phaseolus vulgaris]	[more]
gi\|357505737\|ref\|XP_003623157.1\|	2.3e-09	47.76	hypothetical protein MTR_7g065130 [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG04G007580.1	ClCG04G007580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37078	FAMILY NOT NAMED	coord: 2..88 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG04G007580	Csa4G303090	Cucumber (Chinese Long) v2	cuwcgB301
ClCG04G007580	Cla97C04G074330	Watermelon (97103) v2	wcgwmbB200
ClCG04G007580	Cp4.1LG19g03230	Cucurbita pepo (Zucchini)	cpewcgB439
ClCG04G007580	CsGy4G014600	Cucumber (Gy14) v2	cgybwcgB282
ClCG04G007580	MELO3C033485.2	Melon (DHL92) v3.6.1	medwcgB527
ClCG04G007580	CsaV3_4G025600	Cucumber (Chinese Long) v3	cucwcgB318

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG04G007580	Melon (DHL92) v3.6.1	medwcgB276
ClCG04G007580	Melon (DHL92) v3.6.1	medwcgB324
ClCG04G007580	Silver-seed gourd	carwcgB0025
ClCG04G007580	Silver-seed gourd	carwcgB0089
ClCG04G007580	Silver-seed gourd	carwcgB0156
ClCG04G007580	Silver-seed gourd	carwcgB0542
ClCG04G007580	Silver-seed gourd	carwcgB0569
ClCG04G007580	Silver-seed gourd	carwcgB0975
ClCG04G007580	Cucumber (Chinese Long) v3	cucwcgB224
ClCG04G007580	Cucumber (Chinese Long) v3	cucwcgB408
ClCG04G007580	Cucumber (Chinese Long) v3	cucwcgB488
ClCG04G007580	Watermelon (97103) v2	wcgwmbB195
ClCG04G007580	Watermelon (97103) v2	wcgwmbB196
ClCG04G007580	Watermelon (97103) v2	wcgwmbB203
ClCG04G007580	Wax gourd	wcgwgoB374
ClCG04G007580	Wax gourd	wcgwgoB390
ClCG04G007580	Wax gourd	wcgwgoB380
ClCG04G007580	Watermelon (Charleston Gray)	wcgwcgB051
ClCG04G007580	Watermelon (Charleston Gray)	wcgwcgB067
ClCG04G007580	Watermelon (Charleston Gray)	wcgwcgB150
ClCG04G007580	Cucumber (Gy14) v1	cgywcgB065
ClCG04G007580	Cucumber (Gy14) v1	cgywcgB226
ClCG04G007580	Cucumber (Gy14) v1	cgywcgB293
ClCG04G007580	Cucumber (Gy14) v1	cgywcgB316
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB230
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB585
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB649
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB651
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB736
ClCG04G007580	Cucurbita maxima (Rimu)	cmawcgB768
ClCG04G007580	Cucurbita moschata (Rifu)	cmowcgB214
ClCG04G007580	Cucurbita moschata (Rifu)	cmowcgB584
ClCG04G007580	Cucurbita moschata (Rifu)	cmowcgB650
ClCG04G007580	Cucurbita moschata (Rifu)	cmowcgB742
ClCG04G007580	Cucurbita moschata (Rifu)	cmowcgB769
ClCG04G007580	Wild cucumber (PI 183967)	cpiwcgB224
ClCG04G007580	Wild cucumber (PI 183967)	cpiwcgB316
ClCG04G007580	Wild cucumber (PI 183967)	cpiwcgB404
ClCG04G007580	Wild cucumber (PI 183967)	cpiwcgB491
ClCG04G007580	Cucumber (Chinese Long) v2	cuwcgB220
ClCG04G007580	Cucumber (Chinese Long) v2	cuwcgB387
ClCG04G007580	Cucumber (Chinese Long) v2	cuwcgB467
ClCG04G007580	Melon (DHL92) v3.5.1	mewcgB061
ClCG04G007580	Melon (DHL92) v3.5.1	mewcgB285
ClCG04G007580	Melon (DHL92) v3.5.1	mewcgB330
ClCG04G007580	Melon (DHL92) v3.5.1	mewcgB530
ClCG04G007580	Watermelon (97103) v1	wcgwmB251
ClCG04G007580	Watermelon (97103) v1	wcgwmB253
ClCG04G007580	Watermelon (97103) v1	wcgwmB255
ClCG04G007580	Watermelon (97103) v1	wcgwmB266
ClCG04G007580	Cucurbita pepo (Zucchini)	cpewcgB078
ClCG04G007580	Cucurbita pepo (Zucchini)	cpewcgB382
ClCG04G007580	Cucurbita pepo (Zucchini)	cpewcgB432
ClCG04G007580	Cucurbita pepo (Zucchini)	cpewcgB553
ClCG04G007580	Cucurbita pepo (Zucchini)	cpewcgB785
ClCG04G007580	Bottle gourd (USVL1VR-Ls)	lsiwcgB142
ClCG04G007580	Bottle gourd (USVL1VR-Ls)	lsiwcgB240
ClCG04G007580	Bottle gourd (USVL1VR-Ls)	lsiwcgB241
ClCG04G007580	Bottle gourd (USVL1VR-Ls)	lsiwcgB282
ClCG04G007580	Cucumber (Gy14) v2	cgybwcgB202
ClCG04G007580	Cucumber (Gy14) v2	cgybwcgB429