Cla97C03G068070 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G068070
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Glycine-rich protein family
Location	Cla97Chr03 : 31422012 .. 31422844 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCCCAGTTAGCTTCCTCCCCATCGTTCTCGCCCTCGTTCTCTCGCTCCGCTGCCCCTCAGGTCATCTCCATGCCATTCGGAACTCAATCCCAATACAATTCCCCTCTTTTTTTTCCTTTTTTTCGAGTTTAATGTCGGTTTTTATTCAAAGAAGATGGTTTTAAGTAATTCTCATTGAATATGATCTATTTGTATTGTGACAGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAGTTTGTGTGTTTTTTCTTCATACCTCTCTCTCTCTCTCTCTGTCTTTCTTACGATGAGTTTCATAACTTTTCTTTTTAAAATTTTTGTTGTAATGACTTTGAATATAATATTTGGTACTTTGATTATATTCGTATTTGTTAAGGTTTAGAGAAATGTGTTATAACGTAAAGATACCTCTAATTTGTATTCTAATTATTCTCTGTAATAATAAATTGCTCTGACTCTACTCCTAAACATAACTAACACAATGTTAGGAATTACATAGATTTTTGTGTAAATTTCATAATAGATTTTATATGATTTTTGTAAGCTTTATGTTTGTAGATATACAATGGGTGTGAAAGTGCTTATAGATTGAACCCAAGTGGGAGCTTCAATGTTCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACGTGTTTCAAAACTTCTTGTTCTTCAACAGAGCTACGACACAAAACTTTCGAAATGTCCTCCGCGTCGGCTGCAGCTTCTCGAGCCAAGGAGGTAGGCCTTAG

mRNA sequence

ATGGCTTCCCCAGTTAGCTTCCTCCCCATCGTTCTCGCCCTCGTTCTCTCGCTCCGCTGCCCCTCAGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAATTGAACCCAAGTGGGAGCTTCAATGTTCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACGTGTTTCAAAACTTCTTGTTCTTCAACAGAGCTACGACACAAAACTTTCGAAATGTCCTCCGCGTCGGCTGCAGCTTCTCGAGCCAAGGAGGTAGGCCTTAG

Coding sequence (CDS)

ATGGCTTCCCCAGTTAGCTTCCTCCCCATCGTTCTCGCCCTCGTTCTCTCGCTCCGCTGCCCCTCAGTTTATGGTGAGGAGATTCCAGGACAAATGGTGGTTGAAGCCTTCAAATGTTTTGACAATAAATTGAACCCAAGTGGGAGCTTCAATGTTCCTCCTGAGGCTACTAACCTATTTTGCAATGGACCATGTTTGGTCGAAACACAACTTGTGCTCAACTGCCTTGACAACGTGTTTCAAAACTTCTTGTTCTTCAACAGAGCTACGACACAAAACTTTCGAAATGTCCTCCGCGTCGGCTGCAGCTTCTCGAGCCAAGGAGGTAGGCCTTAG

Protein sequence

MASPVSFLPIVLALVLSLRCPSVYGEEIPGQMVVEAFKCFDNKLNPSGSFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGGRP

Homology

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BLAST of Cla97C03G068070 vs. NCBI nr
Match: XP_004135766.2 (PREDICTED: uncharacterized protein LOC101204762 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 5.7e-43
Identity = 90/122 (73.77%), Postives = 99/122 (81.15%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVYG--EEIPGQMVVEAFKCFDNK-----------LNPS 60
           MASP+SFLPI LAL + LRCPSVY   +EIPGQMVVE FKCFDNK           LNPS
Sbjct: 1   MASPISFLPIALALAVLLRCPSVYSDDQEIPGQMVVEGFKCFDNKFIYNGCERAYRLNPS 60

Query: 61  GSFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQ 110
           GSFNVPPEATNLFCNGPCL+ETQL+LNCLDN FQNFLF+N+AT Q+ RN LRVGCS+SSQ
Sbjct: 61  GSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRVGCSYSSQ 120

[Close]

BLAST of Cla97C03G068070 vs. NCBI nr
Match: XP_008450550.1 (PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo])

HSP 1 Score: 182.6 bits (462), Expect = 7.5e-43
Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVYG-EEIPGQMVVEAFKCFDNK-----------LNPSG 60
           MASP+SFLP+VLALV+SLRCPSV G +EI GQMVVE+FKCFDNK           LNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQG 110
           SFNVPPEATNLFCNGPCL+ETQL+LNCLDN F NFLF+N+AT Q+ RN LR+GCSFSSQ 
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

[Close]

BLAST of Cla97C03G068070 vs. NCBI nr
Match: KGN66014.1 (hypothetical protein Csa_1G561940 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 2.7e-40
Identity = 88/129 (68.22%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVY---------GEEIPGQMVVEAFKCFDNK-------- 60
           MASP+SFLPI LAL + LRCPS +           EIPGQMVVE FKCFDNK        
Sbjct: 1   MASPISFLPIALALAVLLRCPSGHLHVIRELKPDTEIPGQMVVEGFKCFDNKFIYNGCER 60

Query: 61  ---LNPSGSFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRV 110
              LNPSGSFNVPPEATNLFCNGPCL+ETQL+LNCLDN FQNFLF+N+AT Q+ RN LRV
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120

[Close]

BLAST of Cla97C03G068070 vs. NCBI nr
Match: XP_022158829.1 (uncharacterized protein LOC111025289 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 2.6e-35
Identity = 80/120 (66.67%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVYGEEIPGQMVVEAFKCFDNK-----------LNPSGS 60
           MA P +FLPI+LAL +SL  PSV  EEIPGQ+V EA +CFDNK           LNPSGS
Sbjct: 1   MAFP-TFLPILLALAVSLPTPSVCAEEIPGQVVTEALRCFDNKFIYNGCDSGYRLNPSGS 60

Query: 61  FNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
           FNVPPEATNLFC+GPCLVET+LVL+CLD+ F NFLF+N+A  QN RN LR GCS+SSQ G
Sbjct: 61  FNVPPEATNLFCSGPCLVETRLVLDCLDDAFGNFLFYNKAMAQNVRNALRAGCSYSSQRG 119

[Close]

BLAST of Cla97C03G068070 vs. NCBI nr
Match: XP_022931673.1 (uncharacterized protein LOC111437811 [Cucurbita moschata])

HSP 1 Score: 137.9 bits (346), Expect = 2.1e-29
Identity = 70/120 (58.33%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVYGEEIPGQMVVEAFKCFDN-----------KLNPSGS 60
           MASP   LPI+  L+L+L C SV GEE+ GQ V +AF+CFDN           +LNP+G+
Sbjct: 1   MASP---LPIL--LLLALYCSSVCGEELEGQGVTQAFQCFDNNLIYYGCESAYRLNPTGN 60

Query: 61  FNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
            NVP EATNLFCNGPCL+ETQL+LNCLD+ F NFLF+N+AT  + +N LR GCS+S+Q G
Sbjct: 61  LNVPLEATNLFCNGPCLIETQLLLNCLDHAFHNFLFYNKATVPDIQNALRAGCSYSTQRG 115

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BLAST of Cla97C03G068070 vs. TrEMBL
Match: tr|A0A1S3BPH6|A0A1S3BPH6_CUCME (uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.9e-43
Identity = 90/121 (74.38%), Postives = 101/121 (83.47%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVYG-EEIPGQMVVEAFKCFDNK-----------LNPSG 60
           MASP+SFLP+VLALV+SLRCPSV G +EI GQMVVE+FKCFDNK           LNPSG
Sbjct: 1   MASPISFLPVVLALVVSLRCPSVNGDQEISGQMVVESFKCFDNKFIYNGCESAYRLNPSG 60

Query: 61  SFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQG 110
           SFNVPPEATNLFCNGPCL+ETQL+LNCLDN F NFLF+N+AT Q+ RN LR+GCSFSSQ 
Sbjct: 61  SFNVPPEATNLFCNGPCLIETQLLLNCLDNSFHNFLFYNKATAQSVRNALRIGCSFSSQR 120

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BLAST of Cla97C03G068070 vs. TrEMBL
Match: tr|A0A0A0LYD5|A0A0A0LYD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-40
Identity = 88/129 (68.22%), Postives = 97/129 (75.19%), Query Frame = 0


Query: 1   MASPVSFLPIVLALVLSLRCPSVY---------GEEIPGQMVVEAFKCFDNK-------- 60
           MASP+SFLPI LAL + LRCPS +           EIPGQMVVE FKCFDNK        
Sbjct: 1   MASPISFLPIALALAVLLRCPSGHLHVIRELKPDTEIPGQMVVEGFKCFDNKFIYNGCER 60

Query: 61  ---LNPSGSFNVPPEATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRV 110
              LNPSGSFNVPPEATNLFCNGPCL+ETQL+LNCLDN FQNFLF+N+AT Q+ RN LRV
Sbjct: 61  AYRLNPSGSFNVPPEATNLFCNGPCLIETQLLLNCLDNTFQNFLFYNKATAQSVRNALRV 120

[Close]

BLAST of Cla97C03G068070 vs. TrEMBL
Match: tr|M5WIC7|M5WIC7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G314800 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 60/115 (52.17%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 7   FLPIVLALVLSLRCPSVYGEEIPGQMVVEAFKCFDNK-----------LNPSGSFNVPPE 66
           FL   LAL+    C S Y EE P Q  V A  CF+NK           LN SG+FNVPPE
Sbjct: 11  FLCFTLALIAVSCCYSGYAEENPAQTFVTALACFNNKFIYAGCDEAYRLNESGNFNVPPE 70

Query: 67  ATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGGR 111
           AT+LFC+GPCL ETQ VLNC+D++   F+F NRAT  + R  LR GCS++SQ G+
Sbjct: 71  ATDLFCHGPCLAETQQVLNCVDHMLSGFVFNNRATLPDIRGALRAGCSYTSQRGK 125

[Close]

BLAST of Cla97C03G068070 vs. TrEMBL
Match: tr|A0A0S3SQI9|A0A0S3SQI9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G178100 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-22
Identity = 54/111 (48.65%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 10  IVLALVLSLRCPSVYGEEIPGQMVVEAFKCFDNK-----------LNPSGSFNVPPEATN 69
           I+L + +   C      E+ GQ VV+A  CF+NK           LNPSG+ N+P EAT+
Sbjct: 6   IILVISMFYLCSEAAEGELQGQSVVKALSCFNNKHIYVGCDEAFRLNPSGNINIPVEATD 65

Query: 70  LFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
            FC+GPCL E QLVLNC+D++  NFLF+N+AT Q  R  L  GCSFS Q G
Sbjct: 66  FFCSGPCLTEAQLVLNCIDDILSNFLFYNKATVQQMRYALNAGCSFSRQRG 116

[Close]

BLAST of Cla97C03G068070 vs. TrEMBL
Match: tr|K7LJG9|K7LJG9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G147900 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-22
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 10  IVLALVLSLRCPSVYGE----EIPGQMVVEAFKCFDNK-----------LNPSGSFNVPP 69
           I++ L +SL C   Y E    ++ GQ +++A  CFDNK           LNPSG+ N+PP
Sbjct: 24  ILVILSISLFC--FYSEAAEGDLQGQNMLKALSCFDNKLIYVGCDEAYRLNPSGNINIPP 83

Query: 70  EATNLFCNGPCLVETQLVLNCLDNVFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
            AT+ FC+GPCL ETQLVLNC+DN+  NF+F+N+AT Q  R  L  GCS+S Q G
Sbjct: 84  VATDFFCSGPCLTETQLVLNCIDNILSNFIFYNKATLQQMRYALNAGCSYSRQRG 136

[Close]

BLAST of Cla97C03G068070 vs. TAIR10
Match: AT1G56320.1 (BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2))

HSP 1 Score: 87.4 bits (215), Expect = 5.9e-18
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 30  GQMVVEAFKCFDN-----------KLNPSGSFNVPPEATNLFCNGPCLVETQLVLNCLDN 89
           G +V  A  CF+N           +LN  G F VPPE T+ FCNGPC  ET+LVL C+++
Sbjct: 37  GILVQRAAFCFNNNLLYRGCNEAFRLNQQGEFKVPPEETDRFCNGPCSAETELVLTCINS 96

Query: 90  VFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
           V  +F+F+NRAT ++ RN LR GCS S   G
Sbjct: 97  VMSDFVFYNRATPRDVRNALRGGCSSSFTRG 127

[Close]

BLAST of Cla97C03G068070 vs. TAIR10
Match: AT5G49350.1 (Glycine-rich protein family)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-13
Identity = 33/92 (35.87%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 29  PGQMVVEAFKCFDNK-----------LNPSGSFNVPPEATNLFCNGPCLVETQLVLNCLD 88
           P ++V +A +C + K           L  +G  N+P   T  FC GPC  ET L LNC++
Sbjct: 177 PPEIVAKALECLNEKHIYRECDESWRLTLNGDLNIPLGRTEEFCEGPCFSETHLALNCIE 236

Query: 89  NVFQNFLFFNRATTQNFRNVLRVGCSFSSQGG 110
            +  ++ FFNRAT  + R  L+ GCS+  + G
Sbjct: 237 EIIHHYRFFNRATIHDIRETLKSGCSYGPERG 268

The following BLAST results are available for this feature:

BLAST of Cla97C03G068070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135766.2	5.7e-43	73.77	PREDICTED: uncharacterized protein LOC101204762 [Cucumis sativus]	[more]
XP_008450550.1	7.5e-43	74.38	PREDICTED: uncharacterized protein LOC103492117 [Cucumis melo]	[more]
KGN66014.1	2.7e-40	68.22	hypothetical protein Csa_1G561940 [Cucumis sativus]	[more]
XP_022158829.1	2.6e-35	66.67	uncharacterized protein LOC111025289 [Momordica charantia]	[more]
XP_022931673.1	2.1e-29	58.33	uncharacterized protein LOC111437811 [Cucurbita moschata]	[more]

BLAST of Cla97C03G068070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BPH6\|A0A1S3BPH6_CUCME	4.9e-43	74.38	uncharacterized protein LOC103492117 OS=Cucumis melo OX=3656 GN=LOC103492117 PE=...	[more]
tr\|A0A0A0LYD5\|A0A0A0LYD5_CUCSA	1.8e-40	68.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G561940 PE=4 SV=1	[more]
tr\|M5WIC7\|M5WIC7_PRUPE	2.5e-23	52.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G314800 PE=4 SV=1	[more]
tr\|A0A0S3SQI9\|A0A0S3SQI9_PHAAN	2.8e-22	48.65	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.08G...	[more]
tr\|K7LJG9\|K7LJG9_SOYBN	6.3e-22	48.70	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_10G147900 PE=4 SV=1	[more]

BLAST of Cla97C03G068070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G068070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56320.1	5.9e-18	47.25	BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT...	[more]
AT5G49350.1	1.5e-13	35.87	Glycine-rich protein family	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G068070.1	Cla97C03G068070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34366	FAMILY NOT NAMED	coord: 7..109
None	No IPR available	PANTHER	PTHR34366:SF3	SUBFAMILY NOT NAMED	coord: 7..109

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G068070	Cla005163	Watermelon (97103) v1	wmwmbB125
Cla97C03G068070	Csa1G561940	Cucumber (Chinese Long) v2	cuwmbB046
Cla97C03G068070	ClCG03G017700	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G068070	CSPI01G25900	Wild cucumber (PI 183967)	cpiwmbB045
Cla97C03G068070	Cucsa.051140	Cucumber (Gy14) v1	cgywmbB033
Cla97C03G068070	CmaCh11G012330	Cucurbita maxima (Rimu)	cmawmbB117
Cla97C03G068070	CsGy1G025200	Cucumber (Gy14) v2	cgybwmbB044
Cla97C03G068070	MELO3C029286.2	Melon (DHL92) v3.6.1	medwmbB236
Cla97C03G068070	CsaV3_1G038300	Cucumber (Chinese Long) v3	cucwmbB044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G068070	Cucurbita maxima (Rimu)	cmawmbB061
Cla97C03G068070	Cucurbita moschata (Rifu)	cmowmbB047
Cla97C03G068070	Cucurbita moschata (Rifu)	cmowmbB102
Cla97C03G068070	Bottle gourd (USVL1VR-Ls)	lsiwmbB365
Cla97C03G068070	Melon (DHL92) v3.5.1	mewmbB250
Cla97C03G068070	Wax gourd	wgowmbB631