Cla97C03G062050 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G062050
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Secretion protein HlyD family protein
Location	Cla97Chr03 : 22572941 .. 22573291 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

mRNA sequence

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Coding sequence (CDS)

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Protein sequence

MVTRVPLEDLTRAQTPISRANRLLTETMVELESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFKKLHQDRSLYLCF

Homology

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BLAST of Cla97C03G062050 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 65.5 bits (158), Expect = 1.4e-07
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 6    PLEDLTRAQTPISRANRLLTETMVELE----SSNANNARIQAKLDKIEAPLCDAAYLEEK 65
            P E L +A + +++AN LL  T  +LE     S    A +Q +LD++ A L ++ +L  +
Sbjct: 1139 PREKLEQAISSLNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLARE 1198

Query: 66   FKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
            FK+T+ +  LQ+S ME GV W +++ S Q P +D+ FL   F+
Sbjct: 1199 FKKTQEYVDLQNSAMECGVFWFLRQVSTQHPDIDISFLPERFR 1241

[Close]

BLAST of Cla97C03G062050 vs. NCBI nr
Match: KGN65677.1 (Secretion protein HlyD family protein [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]

BLAST of Cla97C03G062050 vs. NCBI nr
Match: XP_011657959.1 (PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 3.1e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 177 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 236

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 237 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 268

[Close]

BLAST of Cla97C03G062050 vs. NCBI nr
Match: XP_008457530.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X1 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 247 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 306

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 307 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 338

[Close]

BLAST of Cla97C03G062050 vs. NCBI nr
Match: XP_008457532.1 (PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 4.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 214 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 273

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 274 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 305

[Close]

BLAST of Cla97C03G062050 vs. TrEMBL
Match: tr|A0A0A0LXX2|A0A0A0LXX2_CUCSA (Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]

BLAST of Cla97C03G062050 vs. TrEMBL
Match: tr|A0A1S3C5B2|A0A1S3C5B2_CUCME (uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 247 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 306

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 307 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 338

[Close]

BLAST of Cla97C03G062050 vs. TrEMBL
Match: tr|A0A1S4E2A9|A0A1S4E2A9_CUCME (uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 202 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 261

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 262 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 293

[Close]

BLAST of Cla97C03G062050 vs. TrEMBL
Match: tr|A0A1S3C5V5|A0A1S3C5V5_CUCME (uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497199 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 214 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 273

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 274 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 305

The following BLAST results are available for this feature:

BLAST of Cla97C03G062050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	1.4e-07	35.92	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
KGN65677.1	3.1e-07	39.13	Secretion protein HlyD family protein [Cucumis sativus]	[more]
XP_011657959.1	3.1e-07	39.13	PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus]	[more]
XP_008457530.1	4.0e-07	39.13	PREDICTED: uncharacterized protein LOC103497199 isoform X1 [Cucumis melo]	[more]
XP_008457532.1	4.0e-07	39.13	PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo]	[more]

BLAST of Cla97C03G062050 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXX2\|A0A0A0LXX2_CUCSA	2.0e-07	39.13	Secretion protein HlyD family protein OS=Cucumis sativus OX=3659 GN=Csa_1G495250...	[more]
tr\|A0A1S3C5B2\|A0A1S3C5B2_CUCME	2.7e-07	39.13	uncharacterized protein LOC103497199 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E2A9\|A0A1S4E2A9_CUCME	2.7e-07	39.13	uncharacterized protein LOC103497199 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C5V5\|A0A1S3C5V5_CUCME	2.7e-07	39.13	uncharacterized protein LOC103497199 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Cla97C03G062050 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G062050 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G062050.1	Cla97C03G062050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G062050	Cla001031	Watermelon (97103) v1	wmwmbB128
Cla97C03G062050	ClCG03G011820	Watermelon (Charleston Gray)	wcgwmbB186

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G062050	Silver-seed gourd	carwmbB0562
Cla97C03G062050	Silver-seed gourd	carwmbB1020
Cla97C03G062050	Cucumber (Gy14) v2	cgybwmbB046
Cla97C03G062050	Cucumber (Gy14) v1	cgywmbB611
Cla97C03G062050	Cucurbita maxima (Rimu)	cmawmbB063
Cla97C03G062050	Cucurbita maxima (Rimu)	cmawmbB116
Cla97C03G062050	Cucurbita moschata (Rifu)	cmowmbB050
Cla97C03G062050	Cucurbita moschata (Rifu)	cmowmbB101
Cla97C03G062050	Wild cucumber (PI 183967)	cpiwmbB048
Cla97C03G062050	Cucumber (Chinese Long) v3	cucwmbB046
Cla97C03G062050	Cucumber (Chinese Long) v2	cuwmbB047
Cla97C03G062050	Bottle gourd (USVL1VR-Ls)	lsiwmbB365
Cla97C03G062050	Melon (DHL92) v3.6.1	medwmbB237
Cla97C03G062050	Melon (DHL92) v3.5.1	mewmbB251
Cla97C03G062050	Watermelon (97103) v1	wmwmbB129
Cla97C03G062050	Wax gourd	wgowmbB630