Cla001031 (gene) Watermelon (97103) v1

Overview
NameCla001031
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 21937054 .. 21937404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

mRNA sequence

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Coding sequence (CDS)

ATGGTGACCCGAGTTCCTTTGGAAGATTTGACTCGTGCTCAAACTCCAATTTCTCGAGCTAATCGTCTTCTAACTGAAACCATGGTAGAGCTGGAATCATCTAATGCTAACAATGCTCGAATTCAAGCCAAACTTGACAAAATTGAAGCCCCCCTTTGTGATGCAGCTTACTTGGAAGAAAAATTTAAGGAAACTAAATCATTCACTAGGCTTCAAGATTCTGTTATGGAATATGGAGTTCAATGGTGTGTGAAGAGAGGCTCTCGTCAGGAGCCCCTAGTGGATCTTCAATTCCTCTCTAGTAACTTTAAGAAGCTTCATCAAGATCGATCCTTATATCTTTGCTTCTGA

Protein sequence

MVTRVPLEDLTRAQTPISRANRLLTETMVELESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQDSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFKKLHQDRSLYLCF
Homology
[Close]
BLAST of Cla001031 vs. TrEMBL
Match: A0A0A0LXX2_CUCSA (Secretion protein HlyD family protein OS=Cucumis sativus GN=Csa_1G495250 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]
BLAST of Cla001031 vs. NCBI nr
Match: gi|778661357|ref|XP_011657959.1| (PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 177 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 236

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 237 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 268

[Close]
BLAST of Cla001031 vs. NCBI nr
Match: gi|700210581|gb|KGN65677.1| (Secretion protein HlyD family protein [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 18  LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLTEAKSELSDAKCLAEKFSKTEEFVVMQ 77

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 78  NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 109

[Close]
BLAST of Cla001031 vs. NCBI nr
Match: gi|659115383|ref|XP_008457530.1| (PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 247 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 306

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 307 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 338

[Close]
BLAST of Cla001031 vs. NCBI nr
Match: gi|659115385|ref|XP_008457531.1| (PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 215 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 274

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 275 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 306

[Close]
BLAST of Cla001031 vs. NCBI nr
Match: gi|659115387|ref|XP_008457532.1| (PREDICTED: uncharacterized protein LOC103497199 isoform X4 [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-08
Identity = 36/92 (39.13%), Postives = 53/92 (57.61%), Query Frame = 1 

Query: 17  ISRANRLLTETMVEL----ESSNANNARIQAKLDKIEAPLCDAAYLEEKFKETKSFTRLQ 76
           + RANR L E  VEL     SS     +++A+L + ++ L DA  L EKF +T+ F  +Q
Sbjct: 214 LMRANRRLEEAKVELGLCQASSQVKIDKLKAQLAEAKSQLSDAKCLAEKFSKTEEFVVMQ 273

Query: 77  DSVMEYGVQWCVKRGSRQEPLVDLQFLSSNFK 105
           + +ME GV W V++ S + P +D  FL   FK
Sbjct: 274 NKIMECGVNWSVRQASIEHPGIDFSFLPIRFK 305

The following BLAST results are available for this feature:
BLAST of Cla001031 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXX2_CUCSA5.0e-0839.13Secretion protein HlyD family protein OS=Cucumis sativus GN=Csa_1G495250 PE=4 SV... [more]
BLAST of Cla001031 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661357|ref|XP_011657959.1|7.1e-0839.13PREDICTED: uncharacterized protein LOC105435920, partial [Cucumis sativus][more]
gi|700210581|gb|KGN65677.1|7.1e-0839.13Secretion protein HlyD family protein [Cucumis sativus][more]
gi|659115383|ref|XP_008457530.1|9.3e-0839.13PREDICTED: uncharacterized protein LOC103497199 isoform X2 [Cucumis melo][more]
gi|659115385|ref|XP_008457531.1|9.3e-0839.13PREDICTED: uncharacterized protein LOC103497199 isoform X3 [Cucumis melo][more]
gi|659115387|ref|XP_008457532.1|9.3e-0839.13PREDICTED: uncharacterized protein LOC103497199 isoform X4 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla001031Cla001031.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla001031Cla97C03G062050Watermelon (97103) v2wmwmbB128
Cla001031ClCG03G011820Watermelon (Charleston Gray)wcgwmB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla001031Watermelon (97103) v2wmwmbB129