Cla97C03G051590 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G051590
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	vacuolar cation/proton exchanger 3-like
Location	Cla97Chr03 : 739260 .. 739502 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

mRNA sequence

ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

Coding sequence (CDS)

ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

Protein sequence

MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRVSLPSHFHFQVAL

Homology

[Close]

BLAST of Cla97C03G051590 vs. NCBI nr
Match: XP_022997996.1 (vacuolar cation/proton exchanger 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAA 60
          MG +EPLVF DLEINGGG T A A VRFGLVRDLWGNL+KVVFGTKLA+LFPAIPLA+AA
Sbjct: 1  MGSDEPLVFRDLEINGGGAT-ATATVRFGLVRDLWGNLLKVVFGTKLAVLFPAIPLAVAA 60

Query: 61 EIYSFG 67
          + Y+FG
Sbjct: 61 DFYNFG 65

[Close]

BLAST of Cla97C03G051590 vs. NCBI nr
Match: XP_022948769.1 (vacuolar cation/proton exchanger 3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-19
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAA 60
          MG +EPLVF DLEINGGG T A A VRFGLVRDLWGNL+K VFGTKLA+LFPAIPLA+AA
Sbjct: 1  MGSDEPLVFRDLEINGGGAT-ATATVRFGLVRDLWGNLLKAVFGTKLAVLFPAIPLAVAA 60

Query: 61 EIYSFG 67
          + Y+FG
Sbjct: 61 DFYNFG 65

[Close]

BLAST of Cla97C03G051590 vs. NCBI nr
Match: NP_001292678.1 (vacuolar cation/proton exchanger 3-like [Cucumis sativus] >XP_011658576.1 PREDICTED: vacuolar cation/proton exchanger 3-like [Cucumis sativus] >AFQ99296.1 cation exchanger CAX4 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 4.1e-19
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MGLNEPLVF-GDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          MGLNEPLV  GDLEIN G ET AV++ VRFGLVR+LW NLVKVVFGTKLA+LFPAIPLA+
Sbjct: 1  MGLNEPLVLNGDLEINEGAETVAVSLPVRFGLVRELWRNLVKVVFGTKLAVLFPAIPLAV 60

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 61 AADFYSFGR 69

[Close]

BLAST of Cla97C03G051590 vs. NCBI nr
Match: XP_008457375.1 (PREDICTED: vacuolar cation/proton exchanger 3-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 6.6e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MGLNEPLV-FGDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          +GL+EPLV  GDLEIN GGET   +V VR GLVR+LW NLVKVVFGTKLA+LF AIPLAM
Sbjct: 2  VGLHEPLVLIGDLEINEGGETVEASVPVRLGLVRELWRNLVKVVFGTKLAVLFSAIPLAM 61

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 62 AADFYSFGR 70

[Close]

BLAST of Cla97C03G051590 vs. NCBI nr
Match: XP_022997997.1 (vacuolar cation/proton exchanger 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 47/68 (69.12%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLA---LLFPAIPLA 60
          MG +EPLVF DLEINGGG T A A VRFGLVRDLWGNL+KVVFGTKLA   L    + LA
Sbjct: 1  MGSDEPLVFRDLEINGGGAT-ATATVRFGLVRDLWGNLLKVVFGTKLAAWTLGLSLLGLA 60

Query: 61 MAAEIYSF 66
            AE  SF
Sbjct: 61 HLAERVSF 67

[Close]

BLAST of Cla97C03G051590 vs. TrEMBL
Match: tr|J7KG37|J7KG37_CUCSA (Vacuolar cation/proton exchanger OS=Cucumis sativus OX=3659 GN=CAX4 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MGLNEPLVF-GDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          MGLNEPLV  GDLEIN G ET AV++ VRFGLVR+LW NLVKVVFGTKLA+LFPAIPLA+
Sbjct: 1  MGLNEPLVLNGDLEINEGAETVAVSLPVRFGLVRELWRNLVKVVFGTKLAVLFPAIPLAV 60

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 61 AADFYSFGR 69

[Close]

BLAST of Cla97C03G051590 vs. TrEMBL
Match: tr|A0A1S3C6N1|A0A1S3C6N1_CUCME (Vacuolar cation/proton exchanger OS=Cucumis melo OX=3656 GN=LOC103497083 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MGLNEPLV-FGDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          +GL+EPLV  GDLEIN GGET   +V VR GLVR+LW NLVKVVFGTKLA+LF AIPLAM
Sbjct: 2  VGLHEPLVLIGDLEINEGGETVEASVPVRLGLVRELWRNLVKVVFGTKLAVLFSAIPLAM 61

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 62 AADFYSFGR 70

[Close]

BLAST of Cla97C03G051590 vs. TrEMBL
Match: tr|A0A1U8M2M9|A0A1U8M2M9_GOSHI (Vacuolar cation/proton exchanger OS=Gossypium hirsutum OX=3635 GN=LOC107932431 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 23 VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          V+ +RF ++R+L  NL +V+ GTKLA+LFPAIPLA+AA+ Y FGR
Sbjct: 46 VSTIRFRILRELLANLQEVILGTKLAVLFPAIPLAIAADFYKFGR 90

[Close]

BLAST of Cla97C03G051590 vs. TrEMBL
Match: tr|A0A0D2MRR3|A0A0D2MRR3_GOSRA (Vacuolar cation/proton exchanger OS=Gossypium raimondii OX=29730 GN=B456_004G007100 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.9e-06
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 23 VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          V+ +RF ++R+L  NL +V+ GTKLA+LFPAIPLA+AA+ Y FGR
Sbjct: 46 VSTIRFRILRELLANLQEVILGTKLAVLFPAIPLAIAADFYKFGR 90

[Close]

BLAST of Cla97C03G051590 vs. TrEMBL
Match: tr|M5VY96|M5VY96_PRUPE (Vacuolar cation/proton exchanger OS=Prunus persica OX=3760 GN=PRUPE_ppa005835mg PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.8e-06
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 0


Query: 23  VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
           V+ VRF ++R L  NL +VV GTKLALLFPAIPLA+AA+ Y FGR
Sbjct: 57  VSNVRFQMLRSLLNNLQEVVLGTKLALLFPAIPLAIAADFYHFGR 101

[Close]

BLAST of Cla97C03G051590 vs. TAIR10
Match: AT3G51860.1 (cation exchanger 3)

HSP 1 Score: 41.6 bits (96), Expect = 2.7e-04
Identity = 19/37 (51.35%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 31 VRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          ++++  NL +V+ GTKL LLF AIPLA+ A  Y++GR
Sbjct: 59 LKNILSNLQEVILGTKLTLLFLAIPLAILANSYNYGR 95

The following BLAST results are available for this feature:

BLAST of Cla97C03G051590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022997996.1	1.1e-19	80.30	vacuolar cation/proton exchanger 3-like isoform X1 [Cucurbita maxima]	[more]
XP_022948769.1	3.2e-19	78.79	vacuolar cation/proton exchanger 3-like isoform X1 [Cucurbita moschata]	[more]
NP_001292678.1	4.1e-19	79.71	vacuolar cation/proton exchanger 3-like [Cucumis sativus] >XP_011658576.1 PREDIC...	[more]
XP_008457375.1	6.6e-17	75.36	PREDICTED: vacuolar cation/proton exchanger 3-like [Cucumis melo]	[more]
XP_022997997.1	1.1e-11	69.12	vacuolar cation/proton exchanger 3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Cla97C03G051590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|J7KG37\|J7KG37_CUCSA	2.7e-19	79.71	Vacuolar cation/proton exchanger OS=Cucumis sativus OX=3659 GN=CAX4 PE=2 SV=1	[more]
tr\|A0A1S3C6N1\|A0A1S3C6N1_CUCME	4.4e-17	75.36	Vacuolar cation/proton exchanger OS=Cucumis melo OX=3656 GN=LOC103497083 PE=3 SV...	[more]
tr\|A0A1U8M2M9\|A0A1U8M2M9_GOSHI	5.9e-06	60.00	Vacuolar cation/proton exchanger OS=Gossypium hirsutum OX=3635 GN=LOC107932431 P...	[more]
tr\|A0A0D2MRR3\|A0A0D2MRR3_GOSRA	5.9e-06	60.00	Vacuolar cation/proton exchanger OS=Gossypium raimondii OX=29730 GN=B456_004G007...	[more]
tr\|M5VY96\|M5VY96_PRUPE	7.8e-06	66.67	Vacuolar cation/proton exchanger OS=Prunus persica OX=3760 GN=PRUPE_ppa005835mg ...	[more]

BLAST of Cla97C03G051590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C03G051590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51860.1	2.7e-04	51.35	cation exchanger 3	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070588	calcium ion transmembrane transport
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0006812	cation transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006885	regulation of pH
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0015369	calcium:proton antiporter activity
molecular_function	GO:0008324	cation transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G051590.1	Cla97C03G051590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G051590	Cla008167	Watermelon (97103) v1	wmwmbB124
Cla97C03G051590	CSPI01G23850	Wild cucumber (PI 183967)	cpiwmbB044
Cla97C03G051590	CmoCh01G006930	Cucurbita moschata (Rifu)	cmowmbB448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G051590	Watermelon (97103) v2	wmbwmbB051
Cla97C03G051590	Silver-seed gourd	carwmbB0404
Cla97C03G051590	Silver-seed gourd	carwmbB0467
Cla97C03G051590	Silver-seed gourd	carwmbB0694
Cla97C03G051590	Silver-seed gourd	carwmbB1053
Cla97C03G051590	Cucumber (Gy14) v2	cgybwmbB042
Cla97C03G051590	Cucumber (Gy14) v1	cgywmbB246
Cla97C03G051590	Cucumber (Gy14) v1	cgywmbB320
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB225
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB257
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB467
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB748
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB749
Cla97C03G051590	Cucurbita maxima (Rimu)	cmawmbB854
Cla97C03G051590	Cucurbita moschata (Rifu)	cmowmbB209
Cla97C03G051590	Cucurbita moschata (Rifu)	cmowmbB237
Cla97C03G051590	Cucurbita moschata (Rifu)	cmowmbB720
Cla97C03G051590	Cucurbita moschata (Rifu)	cmowmbB721
Cla97C03G051590	Cucurbita moschata (Rifu)	cmowmbB830
Cla97C03G051590	Wild cucumber (PI 183967)	cpiwmbB204
Cla97C03G051590	Cucumber (Chinese Long) v3	cucwmbB042
Cla97C03G051590	Cucumber (Chinese Long) v2	cuwmbB043
Cla97C03G051590	Cucumber (Chinese Long) v2	cuwmbB199
Cla97C03G051590	Bottle gourd (USVL1VR-Ls)	lsiwmbB177
Cla97C03G051590	Melon (DHL92) v3.6.1	medwmbB142
Cla97C03G051590	Melon (DHL92) v3.6.1	medwmbB316
Cla97C03G051590	Melon (DHL92) v3.5.1	mewmbB153
Cla97C03G051590	Melon (DHL92) v3.5.1	mewmbB328
Cla97C03G051590	Watermelon (Charleston Gray)	wcgwmbB046
Cla97C03G051590	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G051590	Watermelon (97103) v1	wmwmbB065
Cla97C03G051590	Wax gourd	wgowmbB470