Cla008167 (gene) Watermelon (97103) v1

Overview
NameCla008167
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCa2+ antiporter/cation exchanger (AHRD V1 *-*- B9IG90_POPTR)
LocationChr3 : 743256 .. 743498 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

mRNA sequence

ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

Coding sequence (CDS)

ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAAATTTACAGCTTTGGAAGAGTAAGCCTTCCATCACATTTTCATTTTCAAGTTGCCCTTTAA

Protein sequence

MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGRVSLPSHFHFQVAL
Homology
[Close]
BLAST of Cla008167 vs. TrEMBL
Match: J7KG37_CUCSA (Cation exchanger CAX4 OS=Cucumis sativus GN=CAX4 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.7e-20
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 

Query: 1  MGLNEPLVF-GDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          MGLNEPLV  GDLEIN G ET AV++ VRFGLVR+LW NLVKVVFGTKLA+LFPAIPLA+
Sbjct: 1  MGLNEPLVLNGDLEINEGAETVAVSLPVRFGLVRELWRNLVKVVFGTKLAVLFPAIPLAV 60

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 61 AADFYSFGR 69

[Close]
BLAST of Cla008167 vs. TrEMBL
Match: A0A0D2MRR3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G007100 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 23 VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          V+ +RF ++R+L  NL +V+ GTKLA+LFPAIPLA+AA+ Y FGR
Sbjct: 46 VSTIRFRILRELLANLQEVILGTKLAVLFPAIPLAIAADFYKFGR 90

[Close]
BLAST of Cla008167 vs. TrEMBL
Match: A0A0J8F8S9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102580 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-06
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 19 ETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          E   ++ VR G +R++  NL +V+ GTKL+LLFPAIPLA+AA +YSFGR
Sbjct: 49 ELQLISKVRIGWLRNILNNLQEVILGTKLSLLFPAIPLAIAAHVYSFGR 97

[Close]
BLAST of Cla008167 vs. TrEMBL
Match: M5VY96_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005835mg PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-06
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 23  VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
           V+ VRF ++R L  NL +VV GTKLALLFPAIPLA+AA+ Y FGR
Sbjct: 57  VSNVRFQMLRSLLNNLQEVVLGTKLALLFPAIPLAIAADFYHFGR 101

[Close]
BLAST of Cla008167 vs. TrEMBL
Match: A0A0U4VVR1_SALEU (Ca2+/H+ exchanger OS=Salicornia europaea PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.5e-06
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1 

Query: 22 AVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          +++ +RFGL++++  NL +V+ GTKLA+LFPA+P+A+ A +Y FGR
Sbjct: 51 SISKIRFGLLKNILSNLQEVILGTKLAILFPAVPMAIVAHVYGFGR 96

[Close]
BLAST of Cla008167 vs. NCBI nr
Match: gi|789503194|ref|NP_001292678.1| (vacuolar cation/proton exchanger 3-like [Cucumis sativus])

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-19
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 1 

Query: 1  MGLNEPLVF-GDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          MGLNEPLV  GDLEIN G ET AV++ VRFGLVR+LW NLVKVVFGTKLA+LFPAIPLA+
Sbjct: 1  MGLNEPLVLNGDLEINEGAETVAVSLPVRFGLVRELWRNLVKVVFGTKLAVLFPAIPLAV 60

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 61 AADFYSFGR 69

[Close]
BLAST of Cla008167 vs. NCBI nr
Match: gi|659115077|ref|XP_008457375.1| (PREDICTED: vacuolar cation/proton exchanger 3-like [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-17
Identity = 52/69 (75.36%), Postives = 58/69 (84.06%), Query Frame = 1 

Query: 1  MGLNEPLVF-GDLEINGGGETAAVAV-VRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAM 60
          +GL+EPLV  GDLEIN GGET   +V VR GLVR+LW NLVKVVFGTKLA+LF AIPLAM
Sbjct: 2  VGLHEPLVLIGDLEINEGGETVEASVPVRLGLVRELWRNLVKVVFGTKLAVLFSAIPLAM 61

Query: 61 AAEIYSFGR 68
          AA+ YSFGR
Sbjct: 62 AADFYSFGR 70

[Close]
BLAST of Cla008167 vs. NCBI nr
Match: gi|823145856|ref|XP_012472808.1| (PREDICTED: vacuolar cation/proton exchanger 3-like [Gossypium raimondii])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 

Query: 23 VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          V+ +RF ++R+L  NL +V+ GTKLA+LFPAIPLA+AA+ Y FGR
Sbjct: 46 VSTIRFRILRELLANLQEVILGTKLAVLFPAIPLAIAADFYKFGR 90

[Close]
BLAST of Cla008167 vs. NCBI nr
Match: gi|731332094|ref|XP_010677011.1| (PREDICTED: vacuolar cation/proton exchanger 3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 1.6e-06
Identity = 28/49 (57.14%), Postives = 38/49 (77.55%), Query Frame = 1 

Query: 19 ETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
          E   ++ VR G +R++  NL +V+ GTKL+LLFPAIPLA+AA +YSFGR
Sbjct: 49 ELQLISKVRIGWLRNILNNLQEVILGTKLSLLFPAIPLAIAAHVYSFGR 97

[Close]
BLAST of Cla008167 vs. NCBI nr
Match: gi|645216360|ref|XP_008220766.1| (PREDICTED: vacuolar cation/proton exchanger 3-like [Prunus mume])

HSP 1 Score: 60.1 bits (144), Expect = 2.1e-06
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 

Query: 23  VAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEIYSFGR 68
           V+ VRF ++R L  NL +VV GTKLALLFPAIPLA+AA+ Y FGR
Sbjct: 57  VSNVRFQMLRSLLNNLQEVVLGTKLALLFPAIPLAIAADFYHFGR 101

The following BLAST results are available for this feature:
BLAST of Cla008167 vs. TrEMBL
Match NameE-valueIdentityDescription
J7KG37_CUCSA8.7e-2079.71Cation exchanger CAX4 OS=Cucumis sativus GN=CAX4 PE=2 SV=1[more]
A0A0D2MRR3_GOSRA1.1e-0660.00Uncharacterized protein OS=Gossypium raimondii GN=B456_004G007100 PE=3 SV=1[more]
A0A0J8F8S9_BETVU1.1e-0657.14Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g102580 PE=3 S... [more]
M5VY96_PRUPE1.4e-0666.67Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005835mg PE=3 SV=1[more]
A0A0U4VVR1_SALEU2.5e-0650.00Ca2+/H+ exchanger OS=Salicornia europaea PE=2 SV=1[more]
BLAST of Cla008167 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|789503194|ref|NP_001292678.1|1.3e-1979.71vacuolar cation/proton exchanger 3-like [Cucumis sativus][more]
gi|659115077|ref|XP_008457375.1|2.0e-1775.36PREDICTED: vacuolar cation/proton exchanger 3-like [Cucumis melo][more]
gi|823145856|ref|XP_012472808.1|1.6e-0660.00PREDICTED: vacuolar cation/proton exchanger 3-like [Gossypium raimondii][more]
gi|731332094|ref|XP_010677011.1|1.6e-0657.14PREDICTED: vacuolar cation/proton exchanger 3-like [Beta vulgaris subsp. vulgari... [more]
gi|645216360|ref|XP_008220766.1|2.1e-0666.67PREDICTED: vacuolar cation/proton exchanger 3-like [Prunus mume][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070588 calcium ion transmembrane transport
biological_process GO:0006885 regulation of pH
biological_process GO:0006816 calcium ion transport
biological_process GO:0098655 cation transmembrane transport
biological_process GO:0006812 cation transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0015369 calcium:proton antiporter activity
molecular_function GO:0008324 cation transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla008167Cla008167.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla008167Cla97C03G051590Watermelon (97103) v2wmwmbB124
Cla008167ClCG03G000780Watermelon (Charleston Gray)wcgwmB223
Cla008167CSPI01G23850Wild cucumber (PI 183967)cpiwmB023
Cla008167Cucsa.147040Cucumber (Gy14) v1cgywmB255
Cla008167CmaCh01G006610Cucurbita maxima (Rimu)cmawmB429
Cla008167CmoCh01G006930Cucurbita moschata (Rifu)cmowmB422
Cla008167Lsi02G012860Bottle gourd (USVL1VR-Ls)lsiwmB185
Cla008167CsGy1G023330Cucumber (Gy14) v2cgybwmB023
Cla008167MELO3C020552.2Melon (DHL92) v3.6.1medwmB143
Cla008167CsaV3_1G036160Cucumber (Chinese Long) v3cucwmB026
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla008167Silver-seed gourdcarwmB0150
Cla008167Silver-seed gourdcarwmB0376
Cla008167Silver-seed gourdcarwmB0440
Cla008167Silver-seed gourdcarwmB0662
Cla008167Silver-seed gourdcarwmB0997
Cla008167Cucumber (Chinese Long) v3cucwmB409
Cla008167Cucumber (Chinese Long) v3cucwmB508
Cla008167Watermelon (97103) v2wmwmbB115
Cla008167Watermelon (97103) v2wmwmbB139
Cla008167Wax gourdwgowmB325
Cla008167Wax gourdwgowmB369
Cla008167Wax gourdwgowmB471
Cla008167Watermelon (97103) v1wmwmB041
Cla008167Watermelon (97103) v1wmwmB081
Cla008167Watermelon (97103) v1wmwmB089
Cla008167Watermelon (97103) v1wmwmB096
Cla008167Cucumber (Gy14) v1cgywmB229
Cla008167Cucumber (Gy14) v1cgywmB335
Cla008167Cucurbita maxima (Rimu)cmawmB185
Cla008167Cucurbita maxima (Rimu)cmawmB231
Cla008167Cucurbita maxima (Rimu)cmawmB673
Cla008167Cucurbita maxima (Rimu)cmawmB675
Cla008167Cucurbita maxima (Rimu)cmawmB793
Cla008167Cucurbita moschata (Rifu)cmowmB173
Cla008167Cucurbita moschata (Rifu)cmowmB216
Cla008167Cucurbita moschata (Rifu)cmowmB548
Cla008167Cucurbita moschata (Rifu)cmowmB668
Cla008167Cucurbita moschata (Rifu)cmowmB669
Cla008167Cucurbita moschata (Rifu)cmowmB787
Cla008167Melon (DHL92) v3.5.1mewmB146
Cla008167Melon (DHL92) v3.5.1mewmB355
Cla008167Watermelon (Charleston Gray)wcgwmB064
Cla008167Cucumber (Chinese Long) v2cuwmB021
Cla008167Cucumber (Chinese Long) v2cuwmB482
Cla008167Cucumber (Chinese Long) v2cuwmB213
Cla008167Cucurbita pepo (Zucchini)cpewmB507
Cla008167Cucurbita pepo (Zucchini)cpewmB400
Cla008167Cucurbita pepo (Zucchini)cpewmB551
Cla008167Bottle gourd (USVL1VR-Ls)lsiwmB056
Cla008167Bottle gourd (USVL1VR-Ls)lsiwmB250
Cla008167Cucumber (Gy14) v2cgybwmB358
Cla008167Cucumber (Gy14) v2cgybwmB452
Cla008167Melon (DHL92) v3.6.1medwmB353