Cla97C02G038400 (gene) Watermelon (97103) v2

NameCla97C02G038400
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 25826553 .. 25826783 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTAA

mRNA sequence

ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTAA

Coding sequence (CDS)

ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTAA

Protein sequence

MAKENEVINAPSNLSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDFCSMQKVKILSMVAYTA
BLAST of Cla97C02G038400 vs. NCBI nr
Match: XP_011657210.1 (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 0

Query: 1  MAKENEVI-NAPSNLSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVID 60
          M KE EV+  + S L + ++ ILRYAEK M   +SI+  LP  +FG  +K+ VL +D+ID
Sbjct: 1  MTKEKEVVCESTSVLPMGMKLILRYAEKIMEKDSSITIPLPVGIFGISRKTSVLREDIID 60

Query: 61 FCSMQKVKILSMVAY 75
           C+M +VK  ++VAY
Sbjct: 61 LCNMNEVKTFTLVAY 75

BLAST of Cla97C02G038400 vs. NCBI nr
Match: XP_011656204.1 (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 4.5e-07
Identity = 28/58 (48.28%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 17  SLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDFCSMQKVKILSMVAY 75
           ++E +LR+AEK M   +SI +QLP  LFG G+K++VL +D+ID C+M++V   ++VAY
Sbjct: 238 AMERLLRFAEKVMDKDSSIRYQLPISLFGIGRKTFVLREDIIDLCNMREVNTFTLVAY 295

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011657210.12.6e-0745.33PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
XP_011656204.14.5e-0748.28PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G038400.1Cla97C02G038400.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G038400Cla020194Watermelon (97103) v1wmwmbB316
Cla97C02G038400ClCG02G012700Watermelon (Charleston Gray)wcgwmbB138
The following gene(s) are paralogous to this gene:

None