ClCG02G012700 (gene) Watermelon (Charleston Gray)

NameClCG02G012700
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 26342174 .. 26342588 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTAAGTAAATGTTATTTGTTTATGATATATTTATCATTTTATTAATTAAAAGTTTGTTAATATGTTTGATCTACTATTGTAGGTACTTATACTCATTTTTTGTAGTCGAGAAGAAAGTTTCGAAGTACATTTTTGTAGATCTATCTCTTATATCTGCGGGCCAAAATACTCGAGAGATTAGAGCTTGA

mRNA sequence

ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTACTTATACTCATTTTTTGTAGTCGAGAAGAAAGTTTCGAAGTACATTTTTGTAGATCTATCTCTTATATCTGCGGGCCAAAATACTCGAGAGATTAGAGCTTGA

Coding sequence (CDS)

ATGGCGAAGGAGAATGAAGTTATTAATGCACCATCCAATTTATCAATATCCCTGGAATCTATTCTTAGGTATGCTGAGAAGGAAATGGTTGATGGGACTAGTATTTCCTTCCAACTACCTGCTGAGCTCTTTGGTTCCGGTCAAAAAAGTTATGTCCTATGTAAAGATGTAATCGACTTTTGCAGCATGCAAAAAGTGAAAATTTTATCAATGGTGGCTTATACCGCGTACTTATACTCATTTTTTGTAGTCGAGAAGAAAGTTTCGAAGTACATTTTTGTAGATCTATCTCTTATATCTGCGGGCCAAAATACTCGAGAGATTAGAGCTTGA

Protein sequence

MAKENEVINAPSNLSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDFCSMQKVKILSMVAYTAYLYSFFVVEKKVSKYIFVDLSLISAGQNTREIRA
BLAST of ClCG02G012700 vs. NCBI nr
Match: gi|659123561|ref|XP_008461723.1| (PREDICTED: uncharacterized protein LOC103500255 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.0e-16
Identity = 49/97 (50.52%), Postives = 71/97 (73.20%), Query Frame = 1

Query: 14  LSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDFCSMQKVKILSMVA 73
           + + L++ILR+ EK M   + I +QLP  LFG G+K+ VL +D+IDFC+M++VK L++VA
Sbjct: 1   MPLPLKTILRFVEKVMDKDSGIRYQLPFLLFGIGRKTCVLREDIIDFCNMREVKTLTLVA 60

Query: 74  YTAYLYSFFVVEKKVSKYIFVDLSLISAGQNTREIRA 111
           Y AYL+S    + ++S YIFVD SLI  G NT+E+RA
Sbjct: 61  YMAYLHS----QDELSNYIFVDPSLIYVGHNTQEVRA 93

BLAST of ClCG02G012700 vs. NCBI nr
Match: gi|778708464|ref|XP_011656204.1| (PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 46/94 (48.94%), Postives = 67/94 (71.28%), Query Frame = 1

Query: 17  SLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDFCSMQKVKILSMVAYTA 76
           ++E +LR+AEK M   +SI +QLP  LFG G+K++VL +D+ID C+M++V   ++VAY  
Sbjct: 238 AMERLLRFAEKVMDKDSSIRYQLPISLFGIGRKTFVLREDIIDLCNMREVNTFTLVAYMT 297

Query: 77  YLYSFFVVEKKVSKYIFVDLSLISAGQNTREIRA 111
           YL+S     + VS YIFV  SLIS G +T+E+RA
Sbjct: 298 YLHS-----QDVSNYIFVFPSLISVGHDTQEVRA 326

BLAST of ClCG02G012700 vs. NCBI nr
Match: gi|778714234|ref|XP_011657210.1| (PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-14
Identity = 47/105 (44.76%), Postives = 68/105 (64.76%), Query Frame = 1

Query: 1   MAKENEVI-NAPSNLSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVID 60
           M KE EV+  + S L + ++ ILRYAEK M   +SI+  LP  +FG  +K+ VL +D+ID
Sbjct: 1   MTKEKEVVCESTSVLPMGMKLILRYAEKIMEKDSSITIPLPVGIFGISRKTSVLREDIID 60

Query: 61  FCSMQKVKILSMVAYTAYLYSFFVVEKKVSKYIFVDLSLISAGQN 105
            C+M +VK  ++VAY  YLYS  +  K+  +YIF+D SL S G +
Sbjct: 61  LCNMNEVKTFTLVAYMTYLYSAILGSKENVQYIFIDPSLTSTGHS 105

BLAST of ClCG02G012700 vs. NCBI nr
Match: gi|659125929|ref|XP_008462926.1| (PREDICTED: uncharacterized protein LOC103501188 [Cucumis melo])

HSP 1 Score: 82.8 bits (203), Expect = 4.1e-13
Identity = 43/67 (64.18%), Postives = 50/67 (74.63%), Query Frame = 1

Query: 1  MAKENEVINAPSNLSISLESILRYAEKEMVDGTSISFQLPAELFGSGQKSYVLCKDVIDF 60
          M KE EV + PSNL I L+ IL Y E+  VDG S SFQLP ELFG  +KSY+L +DVIDF
Sbjct: 28 MTKEVEVTSEPSNLPIHLKYILIYVERVNVDGYSFSFQLPLELFGIPRKSYILREDVIDF 87

Query: 61 CSMQKVK 68
          C+MQKVK
Sbjct: 88 CNMQKVK 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
gi|659123561|ref|XP_008461723.1|1.0e-1650.52PREDICTED: uncharacterized protein LOC103500255 [Cucumis melo][more]
gi|778708464|ref|XP_011656204.1|3.4e-1548.94PREDICTED: uncharacterized protein LOC105435665 [Cucumis sativus][more]
gi|778714234|ref|XP_011657210.1|1.7e-1444.76PREDICTED: uncharacterized protein LOC105435826 [Cucumis sativus][more]
gi|659125929|ref|XP_008462926.1|4.1e-1364.18PREDICTED: uncharacterized protein LOC103501188 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G012700.1ClCG02G012700.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G012700Cla020194Watermelon (97103) v1wcgwmB197
ClCG02G012700Cla97C02G038400Watermelon (97103) v2wcgwmbB138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G012700Cucurbita maxima (Rimu)cmawcgB500
ClCG02G012700Cucurbita maxima (Rimu)cmawcgB533
ClCG02G012700Cucurbita maxima (Rimu)cmawcgB550
ClCG02G012700Cucurbita maxima (Rimu)cmawcgB755
ClCG02G012700Cucurbita moschata (Rifu)cmowcgB489
ClCG02G012700Cucurbita moschata (Rifu)cmowcgB578
ClCG02G012700Cucurbita moschata (Rifu)cmowcgB532
ClCG02G012700Cucurbita moschata (Rifu)cmowcgB547
ClCG02G012700Cucurbita moschata (Rifu)cmowcgB756
ClCG02G012700Wild cucumber (PI 183967)cpiwcgB125
ClCG02G012700Wild cucumber (PI 183967)cpiwcgB476
ClCG02G012700Cucumber (Chinese Long) v2cuwcgB119
ClCG02G012700Melon (DHL92) v3.5.1mewcgB093
ClCG02G012700Melon (DHL92) v3.5.1mewcgB106
ClCG02G012700Cucurbita pepo (Zucchini)cpewcgB429
ClCG02G012700Cucurbita pepo (Zucchini)cpewcgB653
ClCG02G012700Cucurbita pepo (Zucchini)cpewcgB666
ClCG02G012700Bottle gourd (USVL1VR-Ls)lsiwcgB045
ClCG02G012700Bottle gourd (USVL1VR-Ls)lsiwcgB129
ClCG02G012700Cucumber (Gy14) v2cgybwcgB115
ClCG02G012700Cucumber (Gy14) v2cgybwcgB418
ClCG02G012700Melon (DHL92) v3.6.1medwcgB090
ClCG02G012700Melon (DHL92) v3.6.1medwcgB102
ClCG02G012700Silver-seed gourdcarwcgB1029
ClCG02G012700Silver-seed gourdcarwcgB1031
ClCG02G012700Cucumber (Chinese Long) v3cucwcgB134
ClCG02G012700Cucumber (Chinese Long) v3cucwcgB477
ClCG02G012700Watermelon (97103) v2wcgwmbB132
ClCG02G012700Wax gourdwcgwgoB296
ClCG02G012700Wax gourdwcgwgoB304
ClCG02G012700Watermelon (Charleston Gray)wcgwcgB089
ClCG02G012700Cucumber (Gy14) v1cgywcgB136
ClCG02G012700Cucumber (Gy14) v1cgywcgB629