Cla97C02G036380 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G036380
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	metallothionein-like protein 4A
Location	Cla97Chr02 : 18538968 .. 18539240 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

mRNA sequence

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

Coding sequence (CDS)

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

Protein sequence

MAESGGGGYKVIGCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAARIAGVKHESLDETKYENDDVLA

Homology

[Close]

BLAST of Cla97C02G036380 vs. NCBI nr
Match: XP_008448405.1 (PREDICTED: metallothionein-like protein 4A [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 41/67 (61.19%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MAESGG----GGYKVI--GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG    GG       CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGLSGRGGVGACNQSCGCAVPCPGGNACRCSTATAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of Cla97C02G036380 vs. NCBI nr
Match: XP_011658404.1 (PREDICTED: EC protein homolog 1-like [Cucumis sativus] >KGN46651.1 hypothetical protein Csa_6G118310 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 41/67 (61.19%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MAESGG----GGYKVI--GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG    GG       CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGRSGRGGVGACNQSCGCAVPCPGGNACRCSTAAAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of Cla97C02G036380 vs. NCBI nr
Match: AAD02561.1 (PGPS/NH21 [Petunia x hybrida])

HSP 1 Score: 69.7 bits (169), Expect = 5.7e-09
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 14 CGCAVPCPHGIACRYATAKAPV--GVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAAR 70
          CGC  PCP G+ACR A+  A    G +M   +CPCGE+C CNPCTCP +E   A + +
Sbjct: 15 CGCPSPCPGGVACRCASGGAATAGGGDMEHKKCPCGEHCGCNPCTCPKSEGTTAGSGK 72

[Close]

BLAST of Cla97C02G036380 vs. NCBI nr
Match: CDO98633.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 65.9 bits (159), Expect = 8.3e-08
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 13 GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          GCGC VPCP G++CR AT +      +   RC CGE+C CNPC CP
Sbjct: 9  GCGCPVPCPGGVSCRCATGRREDDPSIEHKRCSCGEHCGCNPCACP 54

[Close]

BLAST of Cla97C02G036380 vs. NCBI nr
Match: XP_002520927.1 (metallothionein-like protein 4B [Ricinus communis] >EEF41472.1 EC protein III, putative [Ricinus communis])

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 1  MAESGGGGYKVIG-CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          MA++ GG       CGC VPCP G ACR   ++A  G   A  +C CGE+C CNPCTCP
Sbjct: 1  MADTRGGSIACNDRCGCPVPCPGGTACRCRISQAAGGAGDAHSKCSCGEHCGCNPCTCP 59

[Close]

BLAST of Cla97C02G036380 vs. TrEMBL
Match: tr|A0A1S3BJL5|A0A1S3BJL5_CUCME (metallothionein-like protein 4A OS=Cucumis melo OX=3656 GN=LOC103490606 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 41/67 (61.19%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MAESGG----GGYKVI--GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG    GG       CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGLSGRGGVGACNQSCGCAVPCPGGNACRCSTATAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of Cla97C02G036380 vs. TrEMBL
Match: tr|A0A0A0KFY0|A0A0A0KFY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G118310 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-13
Identity = 41/67 (61.19%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 1  MAESGG----GGYKVI--GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG    GG       CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGRSGRGGVGACNQSCGCAVPCPGGNACRCSTAAAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of Cla97C02G036380 vs. TrEMBL
Match: tr|Q9ZTM1|Q9ZTM1_PETHY (PGPS/NH21 OS=Petunia hybrida OX=4102 GN=PGPS/NH21 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-09
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 14 CGCAVPCPHGIACRYATAKAPV--GVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAAR 70
          CGC  PCP G+ACR A+  A    G +M   +CPCGE+C CNPCTCP +E   A + +
Sbjct: 15 CGCPSPCPGGVACRCASGGAATAGGGDMEHKKCPCGEHCGCNPCTCPKSEGTTAGSGK 72

[Close]

BLAST of Cla97C02G036380 vs. TrEMBL
Match: tr|A0A068TTG8|A0A068TTG8_COFCA (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022793001 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-08
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 0


Query: 13 GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          GCGC VPCP G++CR AT +      +   RC CGE+C CNPC CP
Sbjct: 9  GCGCPVPCPGGVSCRCATGRREDDPSIEHKRCSCGEHCGCNPCACP 54

[Close]

BLAST of Cla97C02G036380 vs. TrEMBL
Match: tr|B9S4K8|B9S4K8_RICCO (EC protein III, putative OS=Ricinus communis OX=3988 GN=RCOM_0810020 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-08
Identity = 30/59 (50.85%), Postives = 36/59 (61.02%), Query Frame = 0


Query: 1  MAESGGGGYKVIG-CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          MA++ GG       CGC VPCP G ACR   ++A  G   A  +C CGE+C CNPCTCP
Sbjct: 1  MADTRGGSIACNDRCGCPVPCPGGTACRCRISQAAGGAGDAHSKCSCGEHCGCNPCTCP 59

[Close]

BLAST of Cla97C02G036380 vs. Swiss-Prot
Match: sp|P93746|MT4A_ARATH (Metallothionein-like protein 4A OS=Arabidopsis thaliana OX=3702 GN=MT4A PE=2 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-08
Identity = 30/65 (46.15%), Postives = 37/65 (56.92%), Query Frame = 0


Query: 1  MAESGGGGYKVIG----CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCT 60
          MA++G G   V G    CGC  PCP G +CR    +A  G +     CPCGE+C CNPC 
Sbjct: 1  MADTGKGS-SVAGCNDSCGCPSPCPGGNSCRCRMREASAG-DQGHMVCPCGEHCGCNPCN 60

Query: 61 CPGTE 62
          CP T+
Sbjct: 61 CPKTQ 63

[Close]

BLAST of Cla97C02G036380 vs. Swiss-Prot
Match: sp|Q42377|MT4B_ARATH (Metallothionein-like protein 4B OS=Arabidopsis thaliana OX=3702 GN=MT4B PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-08
Identity = 27/64 (42.19%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MAESGGGGYKVI---GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 60
          MA++G G         CGC  PCP G +CR        G +     CPCGE+C CNPC C
Sbjct: 1  MADTGKGSASASCNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNC 60

Query: 61 PGTE 62
          P T+
Sbjct: 61 PKTQ 64

[Close]

BLAST of Cla97C02G036380 vs. Swiss-Prot
Match: sp|Q109B0|MT21A_ORYSJ (Class II metallothionein-like protein 1A OS=Oryza sativa subsp. japonica OX=39947 GN=MT21A PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 22/44 (50.00%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 58
          CGCAVPCP G  CR A++    G +     C CG++C CNPC C
Sbjct: 7  CGCAVPCPGGTGCRCASSARSGGGD--HTTCSCGDHCGCNPCRC 48

[Close]

BLAST of Cla97C02G036380 vs. TAIR10
Match: AT2G23240.1 (Plant EC metallothionein-like protein, family 15)

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-09
Identity = 27/64 (42.19%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MAESGGGGYKVI---GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 60
          MA++G G         CGC  PCP G +CR        G +     CPCGE+C CNPC C
Sbjct: 1  MADTGKGSASASCNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNC 60

Query: 61 PGTE 62
          P T+
Sbjct: 61 PKTQ 64

[Close]

BLAST of Cla97C02G036380 vs. TAIR10
Match: AT2G42000.2 (Plant EC metallothionein-like protein, family 15)

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 27/65 (41.54%), Postives = 35/65 (53.85%), Query Frame = 0


Query: 1  MAESGGGGYKVIGCGCAVPCP----HGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCT 60
          MA++G G   V GC  +  CP     G +CR    +A  G +     CPCGE+C CNPC 
Sbjct: 37 MADTGKGS-SVAGCNDSCGCPXXXXXGNSCRCRMREASAG-DQGHMVCPCGEHCGCNPCN 96

Query: 61 CPGTE 62
          CP T+
Sbjct: 97 CPKTQ 99

The following BLAST results are available for this feature:

BLAST of Cla97C02G036380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448405.1	1.7e-13	61.19	PREDICTED: metallothionein-like protein 4A [Cucumis melo]	[more]
XP_011658404.1	1.7e-13	61.19	PREDICTED: EC protein homolog 1-like [Cucumis sativus] >KGN46651.1 hypothetical ...	[more]
AAD02561.1	5.7e-09	50.00	PGPS/NH21 [Petunia x hybrida]	[more]
CDO98633.1	8.3e-08	54.35	unnamed protein product [Coffea canephora]	[more]
XP_002520927.1	1.1e-07	50.85	metallothionein-like protein 4B [Ricinus communis] >EEF41472.1 EC protein III, p...	[more]

BLAST of Cla97C02G036380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BJL5\|A0A1S3BJL5_CUCME	1.1e-13	61.19	metallothionein-like protein 4A OS=Cucumis melo OX=3656 GN=LOC103490606 PE=4 SV=...	[more]
tr\|A0A0A0KFY0\|A0A0A0KFY0_CUCSA	1.1e-13	61.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G118310 PE=4 SV=1	[more]
tr\|Q9ZTM1\|Q9ZTM1_PETHY	3.8e-09	50.00	PGPS/NH21 OS=Petunia hybrida OX=4102 GN=PGPS/NH21 PE=2 SV=1	[more]
tr\|A0A068TTG8\|A0A068TTG8_COFCA	5.5e-08	54.35	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00022793001 PE=4 ...	[more]
tr\|B9S4K8\|B9S4K8_RICCO	7.1e-08	50.85	EC protein III, putative OS=Ricinus communis OX=3988 GN=RCOM_0810020 PE=4 SV=1	[more]

BLAST of Cla97C02G036380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P93746\|MT4A_ARATH	1.1e-08	46.15	Metallothionein-like protein 4A OS=Arabidopsis thaliana OX=3702 GN=MT4A PE=2 SV=...	[more]
sp\|Q42377\|MT4B_ARATH	1.9e-08	42.19	Metallothionein-like protein 4B OS=Arabidopsis thaliana OX=3702 GN=MT4B PE=2 SV=...	[more]
sp\|Q109B0\|MT21A_ORYSJ	1.8e-06	50.00	Class II metallothionein-like protein 1A OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of Cla97C02G036380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23240.1	1.1e-09	42.19	Plant EC metallothionein-like protein, family 15	[more]
AT2G42000.2	2.9e-07	41.54	Plant EC metallothionein-like protein, family 15	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000316	Metallthion_15

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G036380.1	Cla97C02G036380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000316	Plant EC metallothionein-like protein, family 15	PFAM	PF02068	Metallothio_PEC	coord: 13..63 e-value: 3.3E-13 score: 49.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G036380	Csa6G118310	Cucumber (Chinese Long) v2	cuwmbB447
Cla97C02G036380	MELO3C013494	Melon (DHL92) v3.5.1	mewmbB114
Cla97C02G036380	ClCG02G010380	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G036380	CSPI06G09650	Wild cucumber (PI 183967)	cpiwmbB470
Cla97C02G036380	Cucsa.119890	Cucumber (Gy14) v1	cgywmbB178
Cla97C02G036380	CmaCh20G007140	Cucurbita maxima (Rimu)	cmawmbB583
Cla97C02G036380	CmoCh20G007100	Cucurbita moschata (Rifu)	cmowmbB562
Cla97C02G036380	Lsi10G001290	Bottle gourd (USVL1VR-Ls)	lsiwmbB046
Cla97C02G036380	CsGy6G009750	Cucumber (Gy14) v2	cgybwmbB425
Cla97C02G036380	MELO3C013494.2	Melon (DHL92) v3.6.1	medwmbB106
Cla97C02G036380	Carg16134	Silver-seed gourd	carwmbB0364

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G036380	Silver-seed gourd	carwmbB0890
Cla97C02G036380	Cucurbita maxima (Rimu)	cmawmbB627
Cla97C02G036380	Cucurbita moschata (Rifu)	cmowmbB601
Cla97C02G036380	Cucumber (Chinese Long) v3	cucwmbB465
Cla97C02G036380	Melon (DHL92) v3.6.1	medwmbB093
Cla97C02G036380	Watermelon (97103) v1	wmwmbB321
Cla97C02G036380	Wax gourd	wgowmbB358