ClCG02G010380 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G010380
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	EC metallothionein-like protein, family 15
Location	CG_Chr02 : 19337892 .. 19338164 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

mRNA sequence

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

Coding sequence (CDS)

ATGGCAGAATCAGGCGGCGGCGGCTACAAAGTCATTGGCTGTGGTTGCGCCGTTCCCTGCCCCCACGGCATCGCTTGCAGGTATGCGACTGCAAAGGCACCGGTGGGAGTAGAGATGGCGCAGTGGAGATGCCCATGCGGGGAGTACTGTGACTGTAACCCCTGCACGTGTCCCGGTACGGAAAGGATAATTGCAGCTGCGGCGAGAATTGCCGGTGTGAAACATGAGAGTTTGGATGAAACCAAATACGAAAACGACGACGTTTTGGCCTGA

Protein sequence

MAESGGGGYKVIGCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAARIAGVKHESLDETKYENDDVLA

Homology

[Close]

BLAST of ClCG02G010380 vs. Swiss-Prot
Match: MT4A_ARATH (Metallothionein-like protein 4A OS=Arabidopsis thaliana GN=MT4A PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-09
Identity = 32/76 (42.11%), Postives = 38/76 (50.00%), Query Frame = 1


Query: 1  MAESGGGGYKVIGC----GCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCT 60
          MA++G G   V GC    GC  PCP G +CR    +A  G +     CPCGE+C CNPC 
Sbjct: 1  MADTGKGS-SVAGCNDSCGCPSPCPGGNSCRCRMREASAG-DQGHMVCPCGEHCGCNPCN 60

Query: 61 CPGTERIIAAAARIAG 73
          CP T+   +A     G
Sbjct: 61 CPKTQTQTSAKGCTCG 74

[Close]

BLAST of ClCG02G010380 vs. Swiss-Prot
Match: MT4B_ARATH (Metallothionein-like protein 4B OS=Arabidopsis thaliana GN=MT4B PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 2.3e-09
Identity = 29/75 (38.67%), Postives = 34/75 (45.33%), Query Frame = 1


Query: 1  MAESGGGGYKVI---GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 60
          MA++G G         CGC  PCP G +CR        G +     CPCGE+C CNPC C
Sbjct: 1  MADTGKGSASASCNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNC 60

Query: 61 PGTERIIAAAARIAG 73
          P T+   +A     G
Sbjct: 61 PKTQTQTSAKGCTCG 75

[Close]

BLAST of ClCG02G010380 vs. Swiss-Prot
Match: EC3_WHEAT (EC protein III OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 22/44 (50.00%), Postives = 24/44 (54.55%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 58
          CGCAVPCP G  CR  +A++          C CGE+C CNPC C
Sbjct: 7  CGCAVPCPGGTGCRCTSARSDAAAG-EHTTCGCGEHCGCNPCAC 49

[Close]

BLAST of ClCG02G010380 vs. Swiss-Prot
Match: EC1_WHEAT (EC protein I/II OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-07
Identity = 22/44 (50.00%), Postives = 24/44 (54.55%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 58
          CGCAVPCP G  CR  +A++          C CGE+C CNPC C
Sbjct: 7  CGCAVPCPGGTGCRCTSARSGAAAG-EHTTCGCGEHCGCNPCAC 49

[Close]

BLAST of ClCG02G010380 vs. Swiss-Prot
Match: EC_MAIZE (EC protein homolog OS=Zea mays PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-07
Identity = 22/44 (50.00%), Postives = 25/44 (56.82%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 58
          CGCAVPCP G  CR  +     G +     C CGE+C+C+PCTC
Sbjct: 7  CGCAVPCPGGKDCRCTSGS---GGQREHTTCGCGEHCECSPCTC 47

[Close]

BLAST of ClCG02G010380 vs. TrEMBL
Match: A0A0A0KFY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118310 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 9.5e-15
Identity = 41/67 (61.19%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MAESGG-GGYKVIG-----CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG  G   +G     CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGRSGRGGVGACNQSCGCAVPCPGGNACRCSTAAAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of ClCG02G010380 vs. TrEMBL
Match: Q9ZTM1_PETHY (PGPS/NH21 OS=Petunia hybrida GN=PGPS/NH21 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.0e-10
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPV--GVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAAR 70
          CGC  PCP G+ACR A+  A    G +M   +CPCGE+C CNPCTCP +E   A + +
Sbjct: 15 CGCPSPCPGGVACRCASGGAATAGGGDMEHKKCPCGEHCGCNPCTCPKSEGTTAGSGK 72

[Close]

BLAST of ClCG02G010380 vs. TrEMBL
Match: A0A068TTG8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022793001 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-09
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 13 GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          GCGC VPCP G++CR AT +      +   RC CGE+C CNPC CP
Sbjct: 9  GCGCPVPCPGGVSCRCATGRREDDPSIEHKRCSCGEHCGCNPCACP 54

[Close]

BLAST of ClCG02G010380 vs. TrEMBL
Match: A0A022RJ84_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017202mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-08
Identity = 27/50 (54.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAK-APVGVEMAQWRCPCGEYCDCNPCTCPGTER 63
          CGC  PCP GI CR A+ + A  G +M   +CPCGE+C CNPC C  TE+
Sbjct: 15 CGCPSPCPGGIGCRCASGEMAASGGDMEHKQCPCGEHCGCNPCNCSKTEQ 64

[Close]

BLAST of ClCG02G010380 vs. TrEMBL
Match: K4B484_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-08
Identity = 28/56 (50.00%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAAR 70
          CGC  PCP G +CR A++ A     M   RC CGE+C CNPCTC  +E   AAA +
Sbjct: 15 CGCPCPCPGGTSCRCASSDA----NMEHKRCSCGEHCGCNPCTCSKSEGTTAAAGK 66

[Close]

BLAST of ClCG02G010380 vs. TAIR10
Match: AT2G42000.2 (AT2G42000.2 Plant EC metallothionein-like protein, family 15)

HSP 1 Score: 63.9 bits (154), Expect = 5.7e-11
Identity = 32/76 (42.11%), Postives = 38/76 (50.00%), Query Frame = 1


Query: 1   MAESGGGGYKVIGC----GCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCT 60
           MA++G G   V GC    GC  PCP G +CR    +A  G +     CPCGE+C CNPC 
Sbjct: 37  MADTGKGS-SVAGCNDSCGCPSPCPGGNSCRCRMREASAG-DQGHMVCPCGEHCGCNPCN 96

Query: 61  CPGTERIIAAAARIAG 73
           CP T+   +A     G
Sbjct: 97  CPKTQTQTSAKGCTCG 110

[Close]

BLAST of ClCG02G010380 vs. TAIR10
Match: AT2G23240.1 (AT2G23240.1 Plant EC metallothionein-like protein, family 15)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 29/75 (38.67%), Postives = 34/75 (45.33%), Query Frame = 1


Query: 1  MAESGGGGYKVI---GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTC 60
          MA++G G         CGC  PCP G +CR        G +     CPCGE+C CNPC C
Sbjct: 1  MADTGKGSASASCNDRCGCPSPCPGGESCRCKMMSEASGGDQEHNTCPCGEHCGCNPCNC 60

Query: 61 PGTERIIAAAARIAG 73
          P T+   +A     G
Sbjct: 61 PKTQTQTSAKGCTCG 75

[Close]

BLAST of ClCG02G010380 vs. NCBI nr
Match: gi|659095117|ref|XP_008448405.1| (PREDICTED: EC protein homolog 1-like [Cucumis melo])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 41/67 (61.19%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MAESGG-GGYKVIG-----CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG  G   +G     CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGLSGRGGVGACNQSCGCAVPCPGGNACRCSTATAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of ClCG02G010380 vs. NCBI nr
Match: gi|778722096|ref|XP_011658404.1| (PREDICTED: EC protein homolog 1-like [Cucumis sativus])

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 41/67 (61.19%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 1  MAESGG-GGYKVIG-----CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNP 60
          MAE GG  G   +G     CGCAVPCP G ACR +TA A  G     WRCPCGE+CDCNP
Sbjct: 1  MAEPGGRSGRGGVGACNQSCGCAVPCPGGNACRCSTAAAAGGETAYNWRCPCGEHCDCNP 60

Query: 61 CTCPGTE 62
          CTCP TE
Sbjct: 61 CTCPRTE 67

[Close]

BLAST of ClCG02G010380 vs. NCBI nr
Match: gi|4105810|gb|AAD02561.1| (PGPS/NH21 [Petunia x hybrida])

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-09
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPV--GVEMAQWRCPCGEYCDCNPCTCPGTERIIAAAAR 70
          CGC  PCP G+ACR A+  A    G +M   +CPCGE+C CNPCTCP +E   A + +
Sbjct: 15 CGCPSPCPGGVACRCASGGAATAGGGDMEHKKCPCGEHCGCNPCTCPKSEGTTAGSGK 72

[Close]

BLAST of ClCG02G010380 vs. NCBI nr
Match: gi|661898666|emb|CDO98633.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-09
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1


Query: 13 GCGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCP 59
          GCGC VPCP G++CR AT +      +   RC CGE+C CNPC CP
Sbjct: 9  GCGCPVPCPGGVSCRCATGRREDDPSIEHKRCSCGEHCGCNPCACP 54

[Close]

BLAST of ClCG02G010380 vs. NCBI nr
Match: gi|672177994|ref|XP_008809112.1| (PREDICTED: EC protein homolog [Phoenix dactylifera])

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 14 CGCAVPCPHGIACRYATAKAPVGVEMAQWRCPCGEYCDCNPCTCPGT 61
          CGCAVPCP G++CR ATA    G E+    C CG++C CNPCTC  T
Sbjct: 14 CGCAVPCPGGVSCRCATATIGGGGEVRHNLCSCGQHCGCNPCTCGRT 60

The following BLAST results are available for this feature:

BLAST of ClCG02G010380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MT4A_ARATH	1.0e-09	42.11	Metallothionein-like protein 4A OS=Arabidopsis thaliana GN=MT4A PE=2 SV=2	[more]
MT4B_ARATH	2.3e-09	38.67	Metallothionein-like protein 4B OS=Arabidopsis thaliana GN=MT4B PE=2 SV=2	[more]
EC3_WHEAT	1.2e-07	50.00	EC protein III OS=Triticum aestivum PE=2 SV=2	[more]
EC1_WHEAT	1.6e-07	50.00	EC protein I/II OS=Triticum aestivum PE=1 SV=2	[more]
EC_MAIZE	2.8e-07	50.00	EC protein homolog OS=Zea mays PE=3 SV=2	[more]

BLAST of ClCG02G010380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFY0_CUCSA	9.5e-15	61.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G118310 PE=4 SV=1	[more]
Q9ZTM1_PETHY	7.0e-10	50.00	PGPS/NH21 OS=Petunia hybrida GN=PGPS/NH21 PE=2 SV=1	[more]
A0A068TTG8_COFCA	4.6e-09	54.35	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022793001 PE=4 SV=1	[more]
A0A022RJ84_ERYGU	2.3e-08	54.00	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017202mg PE=4 SV=1	[more]
K4B484_SOLLC	5.0e-08	50.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of ClCG02G010380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42000.2	5.7e-11	42.11	Plant EC metallothionein-like protein, family 15	[more]
AT2G23240.1	1.3e-10	38.67	Plant EC metallothionein-like protein, family 15	[more]

BLAST of ClCG02G010380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095117\|ref\|XP_008448405.1\|	1.4e-14	61.19	PREDICTED: EC protein homolog 1-like [Cucumis melo]	[more]
gi\|778722096\|ref\|XP_011658404.1\|	1.4e-14	61.19	PREDICTED: EC protein homolog 1-like [Cucumis sativus]	[more]
gi\|4105810\|gb\|AAD02561.1\|	1.0e-09	50.00	PGPS/NH21 [Petunia x hybrida]	[more]
gi\|661898666\|emb\|CDO98633.1\|	6.6e-09	54.35	unnamed protein product [Coffea canephora]	[more]
gi\|672177994\|ref\|XP_008809112.1\|	1.1e-08	57.45	PREDICTED: EC protein homolog [Phoenix dactylifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000316	Metallthion_15

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0016020	membrane
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G010380.1	ClCG02G010380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000316	Plant EC metallothionein-like protein, family 15	PFAM	PF02068	Metallothio_PEC	coord: 13..63 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G010380	Csa6G118310	Cucumber (Chinese Long) v2	cuwcgB457
ClCG02G010380	MELO3C013494	Melon (DHL92) v3.5.1	mewcgB112
ClCG02G010380	Cla97C02G036380	Watermelon (97103) v2	wcgwmbB138
ClCG02G010380	CSPI06G09650	Wild cucumber (PI 183967)	cpiwcgB479
ClCG02G010380	CmaCh20G007140	Cucurbita maxima (Rimu)	cmawcgB495
ClCG02G010380	CsGy6G009750	Cucumber (Gy14) v2	cgybwcgB420
ClCG02G010380	MELO3C013494.2	Melon (DHL92) v3.6.1	medwcgB108
ClCG02G010380	Carg16134	Silver-seed gourd	carwcgB0341

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G010380	Cucurbita pepo (Zucchini)	cpewcgB260
ClCG02G010380	Cucumber (Chinese Long) v3	cucwcgB478
ClCG02G010380	Wax gourd	wcgwgoB287
ClCG02G010380	Cucumber (Gy14) v1	cgywcgB183
ClCG02G010380	Cucurbita moschata (Rifu)	cmowcgB496