Cla97C02G033610 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G033610
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Gibberellin-regulated protein
Location	Cla97Chr02 : 7156915 .. 7157130 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATATGTGGAATGTGTTCGGGATCGAGGGAAGATGTGTGCACAAGACCGTGCAGGAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGTAGGATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAA

mRNA sequence

ATGATGATATGTGGAATGTGTTCGGGATCGAGGGAAGATGTGTGCACAAGACCGTGCAGGAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGTAGGATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAA

Coding sequence (CDS)

ATGATGATATGTGGAATGTGTTCGGGATCGAGGGAAGATGTGTGCACAAGACCGTGCAGGAAGAGGTGCTCGAAAGCGAAGCTGAAGCGTCGGTGCATGAAGTATTGTAGGATATGTTGTAGTAAATGCAAGTGTGTGCCAGGGAGTTATGGCAAGCACCATTGCCCTTGCTATAGCCATGTTCACACCCTTAGGGGTAGGGCCAAGTGCCCTTAA

Protein sequence

MMICGMCSGSREDVCTRPCRKRCSKAKLKRRCMKYCRICCSKCKCVPGSYGKHHCPCYSHVHTLRGRAKCP

Homology

[Close]

BLAST of Cla97C02G033610 vs. NCBI nr
Match: KGN43868.1 (hypothetical protein Csa_7G071570 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 1.9e-15
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 13 DVCTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVPGSYGKHHCPCYSHVHTLRGRAKCP 72
          D CTRPCRKRCSKAKLK XXXXXXXXXXXX  CVPG YGK HCPCYSHVHT+RGRAKCP
Sbjct: 30 DRCTRPCRKRCSKAKLKXXXXXXXXXXXXXXXCVPGGYGKRHCPCYSHVHTIRGRAKCP 88

[Close]

BLAST of Cla97C02G033610 vs. NCBI nr
Match: XP_010028389.1 (PREDICTED: peamaclein [Eucalyptus grandis] >KCW55129.1 hypothetical protein EUGRSUZ_I01086 [Eucalyptus grandis])

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-05
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 15 CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP 72
          C   CR RC+KAK+K             CKCVP G+YG KH CPCY +    +G+ KCP
Sbjct: 29 CEGKCRARCAKAKVKGRCAKYCNICCAECKCVPSGTYGNKHQCPCYRNKKNSKGKPKCP 87

[Close]

BLAST of Cla97C02G033610 vs. NCBI nr
Match: XP_021683427.1 (snakin-1-like [Hevea brasiliensis])

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-05
Identity = 26/64 (40.62%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 10 SREDVCTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG-KHHCPCYSHVHTLRGR 69
          ++   CT+ C+ RC+KA +K             CKCVP G+YG KH CPCY      +G+
Sbjct: 25 AKSPYCTKKCKARCAKAGVKDRCIKYCGICCAECKCVPSGTYGNKHECPCYRDKKNSKGK 84

Query: 70 AKCP 72
           KCP
Sbjct: 85 PKCP 88

[Close]

BLAST of Cla97C02G033610 vs. NCBI nr
Match: XP_022149266.1 (peamaclein-like [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 8.8e-05
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 15 CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP 72
          C + C+KRCSKA +              CKCVP G+YG KH CPCY  + + +G+ KCP
Sbjct: 31 CDKQCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89

[Close]

BLAST of Cla97C02G033610 vs. NCBI nr
Match: ACU14995.1 (unknown [Glycine max])

HSP 1 Score: 54.7 bits (130), Expect = 1.5e-04
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 1   MMICGMCSGSREDV-------CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG- 60
           ++IC + S S  +V       C+  C KRCS+A +K             C+CVP G+YG 
Sbjct: 36  LLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRCVPSGTYGN 95

Query: 61  KHHCPCYSHVHTLRGRAKCP 72
           KH CPCY  +   +G+ KCP
Sbjct: 96  KHECPCYRDMKNSKGKPKCP 115

[Close]

BLAST of Cla97C02G033610 vs. TrEMBL
Match: tr|A0A0A0K2Z1|A0A0A0K2Z1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071570 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-15
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 13 DVCTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVPGSYGKHHCPCYSHVHTLRGRAKCP 72
          D CTRPCRKRCSKAKLK XXXXXXXXXXXX  CVPG YGK HCPCYSHVHT+RGRAKCP
Sbjct: 30 DRCTRPCRKRCSKAKLKXXXXXXXXXXXXXXXCVPGGYGKRHCPCYSHVHTIRGRAKCP 88

[Close]

BLAST of Cla97C02G033610 vs. TrEMBL
Match: tr|A0A059AMZ0|A0A059AMZ0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01086 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-05
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 0


Query: 15 CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG-KHHCPCYSHVHTLRGRAKCP 72
          C   CR RC+KAK+K             CKCVP G+YG KH CPCY +    +G+ KCP
Sbjct: 29 CEGKCRARCAKAKVKGRCAKYCNICCAECKCVPSGTYGNKHQCPCYRNKKNSKGKPKCP 87

[Close]

BLAST of Cla97C02G033610 vs. TrEMBL
Match: tr|A0A0R0GKV9|A0A0R0GKV9_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G087200 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 1  MMICGMCSGSREDV-------CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG- 60
          ++IC + S S  +V       C+  C KRCS+A +K             C+CVP G+YG 
Sbjct: 9  LLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRCVPSGTYGN 68

Query: 61 KHHCPCYSHVHTLRGRAKCP 72
          KH CPCY  +   +G+ KCP
Sbjct: 69 KHECPCYRDMKNSKGKPKCP 88

[Close]

BLAST of Cla97C02G033610 vs. TrEMBL
Match: tr|A0A0B2QJ72|A0A0B2QJ72_GLYSO (Snakin-1 OS=Glycine soja OX=3848 GN=glysoja_042468 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 1  MMICGMCSGSREDV-------CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG- 60
          ++IC + S S  +V       C+  C KRCS+A +K             C+CVP G+YG 
Sbjct: 9  LLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRCVPSGTYGN 68

Query: 61 KHHCPCYSHVHTLRGRAKCP 72
          KH CPCY  +   +G+ KCP
Sbjct: 69 KHECPCYRDMKNSKGKPKCP 88

[Close]

BLAST of Cla97C02G033610 vs. TrEMBL
Match: tr|C6T0H2|C6T0H2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-05
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 1   MMICGMCSGSREDV-------CTRPCRKRCSKAKLKRXXXXXXXXXXXXCKCVP-GSYG- 60
           ++IC + S S  +V       C+  C KRCS+A +K             C+CVP G+YG 
Sbjct: 36  LLICLVLSSSLFEVSMAGSAFCSSKCAKRCSRAGMKDRCTRFCGICCSKCRCVPSGTYGN 95

Query: 61  KHHCPCYSHVHTLRGRAKCP 72
           KH CPCY  +   +G+ KCP
Sbjct: 96  KHECPCYRDMKNSKGKPKCP 115

The following BLAST results are available for this feature:

BLAST of Cla97C02G033610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43868.1	1.9e-15	88.14	hypothetical protein Csa_7G071570 [Cucumis sativus]	[more]
XP_010028389.1	8.8e-05	45.76	PREDICTED: peamaclein [Eucalyptus grandis] >KCW55129.1 hypothetical protein EUGR...	[more]
XP_021683427.1	8.8e-05	40.63	snakin-1-like [Hevea brasiliensis]	[more]
XP_022149266.1	8.8e-05	44.07	peamaclein-like [Momordica charantia]	[more]
ACU14995.1	1.5e-04	37.50	unknown [Glycine max]	[more]

BLAST of Cla97C02G033610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K2Z1\|A0A0A0K2Z1_CUCSA	1.3e-15	88.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G071570 PE=4 SV=1	[more]
tr\|A0A059AMZ0\|A0A059AMZ0_EUCGR	5.8e-05	45.76	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01086 PE=4 SV...	[more]
tr\|A0A0R0GKV9\|A0A0R0GKV9_SOYBN	9.9e-05	37.50	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_14G087200 PE=4 SV=1	[more]
tr\|A0A0B2QJ72\|A0A0B2QJ72_GLYSO	9.9e-05	37.50	Snakin-1 OS=Glycine soja OX=3848 GN=glysoja_042468 PE=4 SV=1	[more]
tr\|C6T0H2\|C6T0H2_SOYBN	9.9e-05	37.50	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Cla97C02G033610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G033610 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015937	coenzyme A biosynthetic process
biological_process	GO:0006952	defense response
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004140	dephospho-CoA kinase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G033610.1	Cla97C02G033610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 15..71 e-value: 1.5E-14 score: 53.8
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 11..71
None	No IPR available	PANTHER	PTHR23201:SF10	GIBBERELLIN-REGULATED GASA/GAST/SNAKIN FAMILY PROTEIN-RELATED	coord: 11..71

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G033610	Cla022611	Watermelon (97103) v1	wmwmbB088
Cla97C02G033610	Cla006405	Watermelon (97103) v1	wmwmbB063
Cla97C02G033610	ClCG10G010600	Watermelon (Charleston Gray)	wcgwmbB044
Cla97C02G033610	ClCG02G006630	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G033610	CmaCh11G017140	Cucurbita maxima (Rimu)	cmawmbB104
Cla97C02G033610	CmoCh11G014010	Cucurbita moschata (Rifu)	cmowmbB088
Cla97C02G033610	Lsi08G015100	Bottle gourd (USVL1VR-Ls)	lsiwmbB433
Cla97C02G033610	Lsi03G005590	Bottle gourd (USVL1VR-Ls)	lsiwmbB226
Cla97C02G033610	CsGy7G006610	Cucumber (Gy14) v2	cgybwmbB503
Cla97C02G033610	Carg26992	Silver-seed gourd	carwmbB0193
Cla97C02G033610	Bhi11G000974	Wax gourd	wgowmbB033
Cla97C02G033610	Bhi04G000374	Wax gourd	wgowmbB297

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla97C02G033610	Cla97C10G193530	Watermelon (97103) v2	wmbwmbB048
Cla97C02G033610	Cla97C08G160010	Watermelon (97103) v2	wmbwmbB110

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G033610	Melon (DHL92) v3.6.1	medwmbB166
Cla97C02G033610	Melon (DHL92) v3.5.1	mewmbB180
Cla97C02G033610	Watermelon (97103) v1	wmwmbB317
Cla97C02G033610	Watermelon (97103) v2	wmbwmbB101
Cla97C02G033610	Watermelon (97103) v2	wmbwmbB102
Cla97C02G033610	Silver-seed gourd	carwmbB0303
Cla97C02G033610	Silver-seed gourd	carwmbB0394
Cla97C02G033610	Silver-seed gourd	carwmbB0477
Cla97C02G033610	Cucumber (Gy14) v1	cgywmbB395
Cla97C02G033610	Cucumber (Gy14) v1	cgywmbB600
Cla97C02G033610	Cucurbita maxima (Rimu)	cmawmbB342
Cla97C02G033610	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G033610	Cucurbita maxima (Rimu)	cmawmbB744
Cla97C02G033610	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G033610	Cucurbita moschata (Rifu)	cmowmbB717
Cla97C02G033610	Wild cucumber (PI 183967)	cpiwmbB554
Cla97C02G033610	Cucumber (Chinese Long) v3	cucwmbB292
Cla97C02G033610	Cucumber (Chinese Long) v3	cucwmbB550
Cla97C02G033610	Cucumber (Chinese Long) v2	cuwmbB530
Cla97C02G033610	Bottle gourd (USVL1VR-Ls)	lsiwmbB277