Bhi11G000974 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi11G000974
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Gibberellin-regulated protein 1, putative
Location	chr11 : 34037800 .. 34038470 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATAACAAATTTATTCCTTCTCTAATAAATACCTTCCAATGCTCAATTTCTCAATAGTGTGTTTCAATATATATTCCCAAGTTTTTTCCACTGATCTCAAACACTTTAAGCAAATATGAAGAAGCTTTTCTTTTTCACATTCTTACTTACCTTTCTTCTCTTAACATCTTCCTTCATAGACATTGTCATCGCCATGCCCGGTAAGTCGATCGTCTCTTCATTGTCGAATGTATACAGTCTTCCTCTTCTTCCGCGTTGATAATAACGTCTTTTACTTTAGGGATCTAACTTTCAACATTTTTTGTTTTAATGTTTGGTTGTTAATGCATATGTGAAGTGTTTTGTGGCAAAAAATGCAAGAAGAGATGCTCAAAGGCAGGAGTGATGGATAGATGCATCAAGTATTGTGGGATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGAACTTATGGAAATAAGCATGAGTGCCCTTGTTATAGGGACATGAGAAGTTCTAAGGGTAAGCCCAAGTGCCCTTGAGATGAGAAATGGCTATTCAACAAAAAGGCAGATATGCAATATGTGTTTGATGATTCCCCTTTAATAGCCTTTAGTGTGTTTTCAGATATATATATATATACACTAATGGTTCCGATTACTCGTGTTCGAAAAATTTGATCGACCAGAC

mRNA sequence

AAATAACAAATTTATTCCTTCTCTAATAAATACCTTCCAATGCTCAATTTCTCAATAGTGTGTTTCAATATATATTCCCAAGTTTTTTCCACTGATCTCAAACACTTTAAGCAAATATGAAGAAGCTTTTCTTTTTCACATTCTTACTTACCTTTCTTCTCTTAACATCTTCCTTCATAGACATTGTCATCGCCATGCCCGTGTTTTGTGGCAAAAAATGCAAGAAGAGATGCTCAAAGGCAGGAGTGATGGATAGATGCATCAAGTATTGTGGGATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGAACTTATGGAAATAAGCATGAGTGCCCTTGTTATAGGGACATGAGAAGTTCTAAGGGTAAGCCCAAGTGCCCTTGAGATGAGAAATGGCTATTCAACAAAAAGGCAGATATGCAATATGTGTTTGATGATTCCCCTTTAATAGCCTTTAGTGTGTTTTCAGATATATATATATATACACTAATGGTTCCGATTACTCGTGTTCGAAAAATTTGATCGACCAGAC

Coding sequence (CDS)

ATGAAGAAGCTTTTCTTTTTCACATTCTTACTTACCTTTCTTCTCTTAACATCTTCCTTCATAGACATTGTCATCGCCATGCCCGTGTTTTGTGGCAAAAAATGCAAGAAGAGATGCTCAAAGGCAGGAGTGATGGATAGATGCATCAAGTATTGTGGGATTTGCTGTGGCTATTGCAAGTGTGTTCCTTCTGGAACTTATGGAAATAAGCATGAGTGCCCTTGTTATAGGGACATGAGAAGTTCTAAGGGTAAGCCCAAGTGCCCTTGA

Protein sequence

MKKLFFFTFLLTFLLLTSSFIDIVIAMPVFCGKKCKKRCSKAGVMDRCIKYCGICCGYCKCVPSGTYGNKHECPCYRDMRSSKGKPKCP

Homology

[Close]

BLAST of Bhi11G000974 vs. TAIR10
Match: AT2G14900.1 (Gibberellin-regulated family protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.1e-10
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 60  KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
           +CVPSGTYGNKHEC CYRD  SSKG PKCP
Sbjct: 79  QCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

[Close]

BLAST of Bhi11G000974 vs. TAIR10
Match: AT5G59845.1 (Gibberellin-regulated family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.8e-10
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 61 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

[Close]

BLAST of Bhi11G000974 vs. TAIR10
Match: AT1G10588.1 (Gibberellin-regulated family protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.2e-10
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 62 CVPSGTYGNKDECPCYRDMKNSKGGSKCP 90

[Close]

BLAST of Bhi11G000974 vs. TAIR10
Match: AT2G39540.1 (Gibberellin-regulated family protein)

HSP 1 Score: 57.0 bits (136), Expect = 6.9e-09
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGT+G+K ECPCYRDM++SKG  KCP
Sbjct: 59 CVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

[Close]

BLAST of Bhi11G000974 vs. TAIR10
Match: AT2G30810.1 (Gibberellin-regulated family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.9e-07
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 0


Query: 61  CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
           CVPSGTYG+K ECPCY +  + +G PKCP
Sbjct: 78  CVPSGTYGHKEECPCYNNWTTKEGGPKCP 106

[Close]

BLAST of Bhi11G000974 vs. Swiss-Prot
Match: sp|Q948Z4|SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.0e-10
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRD ++SKGK KCP
Sbjct: 59 KCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88

[Close]

BLAST of Bhi11G000974 vs. Swiss-Prot
Match: sp|P86888|PMLN_PRUPE (Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-09
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGTYGNK ECPCYRD+++SKG PKCP
Sbjct: 35 CVPSGTYGNKDECPCYRDLKNSKGNPKCP 63

[Close]

BLAST of Bhi11G000974 vs. Swiss-Prot
Match: sp|O82328|GASA7_ARATH (Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.9e-09
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 60  KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
           +CVPSGTYGNKHEC CYRD  SSKG PKCP
Sbjct: 79  QCVPSGTYGNKHECACYRDKLSSKGTPKCP 108

[Close]

BLAST of Bhi11G000974 vs. Swiss-Prot
Match: sp|Q8LFM2|GASAA_ARATH (Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGTYGNK ECPCYRDM++SKG  KCP
Sbjct: 61 CVPSGTYGNKDECPCYRDMKNSKGTSKCP 89

[Close]

BLAST of Bhi11G000974 vs. Swiss-Prot
Match: sp|O80641|GASA8_ARATH (Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 61 CVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          CVPSGT+G+K ECPCYRDM++SKG  KCP
Sbjct: 59 CVPSGTFGHKDECPCYRDMKNSKGGSKCP 87

[Close]

BLAST of Bhi11G000974 vs. TrEMBL
Match: tr|A0A2P5EYK4|A0A2P5EYK4_9ROSA (Gibberellin regulated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136680 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 64 KCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

[Close]

BLAST of Bhi11G000974 vs. TrEMBL
Match: tr|A0A2P5DN83|A0A2P5DN83_PARAD (Gibberellin regulated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048070 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 64 KCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

[Close]

BLAST of Bhi11G000974 vs. TrEMBL
Match: tr|A0A022RD12|A0A022RD12_ERYGU (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a024675mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.4e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKH+CPCYRDMRSSKGKPKCP
Sbjct: 64 KCVPSGTYGNKHQCPCYRDMRSSKGKPKCP 93

[Close]

BLAST of Bhi11G000974 vs. TrEMBL
Match: tr|K0E174|K0E174_POPTO (Gibberellin-regulated protein OS=Populus tomentosa OX=118781 GN=GASA PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDM++SKGKPKCP
Sbjct: 59 KCVPSGTYGNKHECPCYRDMKNSKGKPKCP 88

[Close]

BLAST of Bhi11G000974 vs. TrEMBL
Match: tr|H9D2D5|H9D2D5_MEDSA (Snakin-1 OS=Medicago sativa OX=3879 GN=SNK-1 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.8e-10
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDM++SKGKPKCP
Sbjct: 62 KCVPSGTYGNKHECPCYRDMKNSKGKPKCP 91

[Close]

BLAST of Bhi11G000974 vs. NCBI nr
Match: XP_022149266.1 (peamaclein-like [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 3.0e-10
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMRSSKGKPKCP
Sbjct: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 89

[Close]

BLAST of Bhi11G000974 vs. NCBI nr
Match: XP_012836782.1 (PREDICTED: peamaclein [Erythranthe guttata] >EYU37603.1 hypothetical protein MIMGU_mgv1a024675mg [Erythranthe guttata])

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKH+CPCYRDMRSSKGKPKCP
Sbjct: 64 KCVPSGTYGNKHQCPCYRDMRSSKGKPKCP 93

[Close]

BLAST of Bhi11G000974 vs. NCBI nr
Match: XP_015972571.1 (peamaclein [Arachis duranensis])

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 59 KCVPSGTYGNKHECPCYRDMRNSKGKPKCP 88

[Close]

BLAST of Bhi11G000974 vs. NCBI nr
Match: PON74748.1 (Gibberellin regulated protein [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 64 KCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

[Close]

BLAST of Bhi11G000974 vs. NCBI nr
Match: PON90613.1 (Gibberellin regulated protein [Trema orientalis])

HSP 1 Score: 72.8 bits (177), Expect = 6.7e-10
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 60 KCVPSGTYGNKHECPCYRDMRSSKGKPKCP 90
          KCVPSGTYGNKHECPCYRDMR+SKGKPKCP
Sbjct: 64 KCVPSGTYGNKHECPCYRDMRNSKGKPKCP 93

The following BLAST results are available for this feature:

BLAST of Bhi11G000974 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G14900.1	2.1e-10	83.33	Gibberellin-regulated family protein	[more]
AT5G59845.1	4.8e-10	82.76	Gibberellin-regulated family protein	[more]
AT1G10588.1	6.2e-10	82.76	Gibberellin-regulated family protein	[more]
AT2G39540.1	6.9e-09	75.86	Gibberellin-regulated family protein	[more]
AT2G30810.1	2.9e-07	65.52	Gibberellin-regulated family protein	[more]

BLAST of Bhi11G000974 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q948Z4\|SNAK1_SOLTU	2.0e-10	86.67	Snakin-1 OS=Solanum tuberosum OX=4113 GN=SN1 PE=1 SV=1	[more]
sp\|P86888\|PMLN_PRUPE	1.7e-09	82.76	Peamaclein OS=Prunus persica OX=3760 PE=1 SV=1	[more]
sp\|O82328\|GASA7_ARATH	3.9e-09	83.33	Gibberellin-regulated protein 7 OS=Arabidopsis thaliana OX=3702 GN=GASA7 PE=3 SV...	[more]
sp\|Q8LFM2\|GASAA_ARATH	8.6e-09	82.76	Gibberellin-regulated protein 10 OS=Arabidopsis thaliana OX=3702 GN=GASA10 PE=2 ...	[more]
sp\|O80641\|GASA8_ARATH	1.2e-07	75.86	Gibberellin-regulated protein 8 OS=Arabidopsis thaliana OX=3702 GN=At2g39540 PE=...	[more]

BLAST of Bhi11G000974 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P5EYK4\|A0A2P5EYK4_9ROSA	4.4e-10	96.67	Gibberellin regulated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_136680 ...	[more]
tr\|A0A2P5DN83\|A0A2P5DN83_PARAD	4.4e-10	96.67	Gibberellin regulated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048...	[more]
tr\|A0A022RD12\|A0A022RD12_ERYGU	4.4e-10	96.67	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a024675mg PE...	[more]
tr\|K0E174\|K0E174_POPTO	9.8e-10	93.33	Gibberellin-regulated protein OS=Populus tomentosa OX=118781 GN=GASA PE=2 SV=1	[more]
tr\|H9D2D5\|H9D2D5_MEDSA	9.8e-10	93.33	Snakin-1 OS=Medicago sativa OX=3879 GN=SNK-1 PE=2 SV=1	[more]

BLAST of Bhi11G000974 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022149266.1	3.0e-10	100.00	peamaclein-like [Momordica charantia]	[more]
XP_012836782.1	6.7e-10	96.67	PREDICTED: peamaclein [Erythranthe guttata] >EYU37603.1 hypothetical protein MIM...	[more]
XP_015972571.1	6.7e-10	96.67	peamaclein [Arachis duranensis]	[more]
PON74748.1	6.7e-10	96.67	Gibberellin regulated protein [Parasponia andersonii]	[more]
PON90613.1	6.7e-10	96.67	Gibberellin regulated protein [Trema orientalis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003854	GASA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0015937	coenzyme A biosynthetic process
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006952	defense response
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004140	dephospho-CoA kinase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi11M000974	Bhi11M000974	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 30..89 e-value: 1.0E-22 score: 79.9
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 3..89
None	No IPR available	PANTHER	PTHR23201:SF10	GIBBERELLIN-REGULATED GASA/GAST/SNAKIN FAMILY PROTEIN-RELATED	coord: 3..89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi11G000974	Csa7G071570	Cucumber (Chinese Long) v2	cuwgoB651
Bhi11G000974	Csa4G001520	Cucumber (Chinese Long) v2	cuwgoB356
Bhi11G000974	MELO3C017984	Melon (DHL92) v3.5.1	mewgoB564
Bhi11G000974	MELO3C018503	Melon (DHL92) v3.5.1	mewgoB198
Bhi11G000974	ClCG02G006630	Watermelon (Charleston Gray)	wcgwgoB259
Bhi11G000974	ClCG10G010600	Watermelon (Charleston Gray)	wcgwgoB078
Bhi11G000974	CSPI04G00570	Wild cucumber (PI 183967)	cpiwgoB358
Bhi11G000974	CSPI07G07040	Wild cucumber (PI 183967)	cpiwgoB659
Bhi11G000974	Cucsa.219320	Cucumber (Gy14) v1	cgywgoB443
Bhi11G000974	Cucsa.097360	Cucumber (Gy14) v1	cgywgoB125
Bhi11G000974	Lsi03G005590	Bottle gourd (USVL1VR-Ls)	lsiwgoB307
Bhi11G000974	Lsi03G010390	Bottle gourd (USVL1VR-Ls)	lsiwgoB292
Bhi11G000974	CsGy4G000500	Cucumber (Gy14) v2	cgybwgoB342
Bhi11G000974	CsGy7G006610	Cucumber (Gy14) v2	cgybwgoB619
Bhi11G000974	MELO3C017982.2	Melon (DHL92) v3.6.1	medwgoB569
Bhi11G000974	MELO3C018503.2	Melon (DHL92) v3.6.1	medwgoB200
Bhi11G000974	CsaV3_4G000520	Cucumber (Chinese Long) v3	cucwgoB360
Bhi11G000974	Cla006405	Watermelon (97103) v1	wgowmB007
Bhi11G000974	Cla97C10G193530	Watermelon (97103) v2	wgowmbB001
Bhi11G000974	Cla97C02G033610	Watermelon (97103) v2	wgowmbB033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None