Cla97C01G020260 (gene) Watermelon (97103) v2

Overview
NameCla97C01G020260
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat
LocationCla97Chr01 : 32995089 .. 32996281 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAGAAGCTCTACACCTCCTTCATCTCCACTACAAAAGCCCCTCTCGACCTTCGTTTCCATAATTCCCTCCTTCAGTCTTACGCTTCAATCGCCACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTGCTCTCTCGCCTCAATTCGGCAAATTCTCAATTTCATGGTCACCAATGGCTTCGATCCTGACAAGGTAACCACTGATCTTGCTGTGCGTTCGCTTTGTTCGGTAGGTCTGGTTGATGAAGCTGTAGAATTAGTTAAGGAATTATCGCAAAAACACTCGCCTCCTGATTCTTATACATATAATCATCTCGTTAAGCAACTCTGCAAGTCCAGAGCTCTGTCTACGGTTTATGATTTTATTGTTGAAATGCGTACTAGCTGTGGTGCGAAGCCCGATCTTGTTACTTTCACAATCTTGATAGATAACGTGTGTAATAGCAAGAATCTACGGGAGGCTATGCGGTTGGTAAGTTTGCTGTATAAGGAGGGTTTTAAGCCGGATTGCTTTGTTTATAACACAATTATGAAGGGTTATTGTATGATTGGCAGGGGCAGCGAGGCAATTGAAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAACTTTTAATACGTTGATTTTTGGGTTATCAAAGTCGGGGCGAGTTAAGGAAGCCAGAAAGTTTTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGAGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGGTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGCGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTCGAAACAGCTTCATATGCTACTTTTGTGAGGGTGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACTTTAGAGACTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

mRNA sequence

ATGCCAAGAAGCTCTACACCTCCTTCATCTCCACTACAAAAGCCCCTCTCGACCTTCGTTTCCATAATTCCCTCCTTCAGTCTTACGCTTCAATCGCCACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTGCTCTCTCGCCTCAATTCGGCAAATTCTCAATTTCATGGTCACCAATGGCTTCGATCCTGACAAGGGGCAGCGAGGCAATTGAAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAACTTTTAATACGTTGATTTTTGGGTTATCAAAGTCGGGGCGAGTTAAGGAAGCCAGAAAGTTTTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGAGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGGTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGCGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTCGAAACAGCTTCATATGCTACTTTTGTGAGGGTGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACTTTAGAGACTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

Coding sequence (CDS)

ATGCCAAGAAGCTCTACACCTCCTTCATCTCCACTACAAAAGCCCCTCTCGACCTTCGTTTCCATAATTCCCTCCTTCAGTCTTACGCTTCAATCGCCACACTCAATGACTCCATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCCGATCAATCGACCTTCCATGTCTTACTCTCCACCTCCGGGAATGGTCCTGATTGCTCTCTCGCCTCAATTCGGCAAATTCTCAATTTCATGGTCACCAATGGCTTCGATCCTGACAAGGGGCAGCGAGGCAATTGAAGTCTATAAGAAAATGAAGGAGGTGGGATTGGAGCCTGATGTTGTAACTTTTAATACGTTGATTTTTGGGTTATCAAAGTCGGGGCGAGTTAAGGAAGCCAGAAAGTTTTTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCAGTTACTTACACTTCATTGATGAATGGAATGTGTTGTGAGGGTGATGCTTTGAGAGCACTGTCATTGCTTGAGGAGATGGAGGCAAAGGGGTGCAGCCCCAATTCGTGCACATATAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGCGATTGAATTGTATGGTTTGATGAAGTCTAGTGATATGAAGCTCGAAACAGCTTCATATGCTACTTTTGTGAGGGTGCTTTGCAGGAGTGGTAGAATTGCTGAAGCCTATGAAGTGTTTGATTATGCAGTTGAGAGTAAAAGTCTGACTGATGTTGCTGCATATTCAACTTTAGAGACTACATTGAAGTCTCTGAAGAAAGCAAGGGAGCAAGCCCATGCTATATAA

Protein sequence

MPRSSTPPSSPLQKPLSTFVSIIPSFSLTLQSPHSMTPSLSSATCPKFNLPSRPINRPSMSYSPPPGMVLIALSPQFGKFSISWSPMASILTRGSEAIEVYKKMKEVGLEPDVVTFNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSLMNGMCCEGDALRALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRAIELYGLMKSSDMKLETASYATFVRVLCRSGRIAEAYEVFDYAVESKSLTDVAAYSTLETTLKSLKKAREQAHAI
Homology
[Close]
BLAST of Cla97C01G020260 vs. NCBI nr
Match: ERM96398.1 (hypothetical protein AMTR_s00001p00240640 [Amborella trichopoda])

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 90  ILTRGSEAIEVYKKMKEVGLEPDVVTFNTLIFGLSKSGR 129
           +L RG+EA+ VYKKM+E G EPD+V++NTLI+GLS +G+
Sbjct: 6   MLDRGAEALTVYKKMREDGSEPDLVSYNTLIYGLSNAGK 44

[Close]
BLAST of Cla97C01G020260 vs. TrEMBL
Match: tr|F6HJU5|F6HJU5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s1360g00010 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.5e-08
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 0 

Query: 90  ILTRGSEAIEVYKKMKEVGLEPDVVTFNTLIFGLSKSGRV 130
           IL +GSEAI VYKKMKE G+EPD+VT+NTLIFGLSKSGRV
Sbjct: 6   ILDKGSEAIGVYKKMKEEGVEPDLVTYNTLIFGLSKSGRV 45

[Close]
BLAST of Cla97C01G020260 vs. TrEMBL
Match: tr|W1NLI8|W1NLI8_AMBTC (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00001p00240640 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.0e-04
Identity = 24/39 (61.54%), Postives = 34/39 (87.18%), Query Frame = 0 

Query: 90  ILTRGSEAIEVYKKMKEVGLEPDVVTFNTLIFGLSKSGR 129
           +L RG+EA+ VYKKM+E G EPD+V++NTLI+GLS +G+
Sbjct: 6   MLDRGAEALTVYKKMREDGSEPDLVSYNTLIYGLSNAGK 44

The following BLAST results are available for this feature:
BLAST of Cla97C01G020260 vs. NCBI nr
Match NameE-valueIdentityDescription
ERM96398.11.5e-0461.54hypothetical protein AMTR_s00001p00240640 [Amborella trichopoda][more]
BLAST of Cla97C01G020260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|F6HJU5|F6HJU5_VITVI1.5e-0882.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_00s1360g00010 PE=4 SV=... [more]
tr|W1NLI8|W1NLI8_AMBTC1.0e-0461.54Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00001p00240640... [more]
BLAST of Cla97C01G020260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G020260 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0008150 biological_process
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009451 RNA modification
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G020260.1Cla97C01G020260.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 220..242
e-value: 0.052
score: 13.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 111..159
e-value: 9.1E-16
score: 57.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 220..248
e-value: 3.4E-4
score: 18.6
coord: 149..183
e-value: 9.9E-10
score: 36.0
coord: 184..215
e-value: 1.7E-7
score: 28.9
coord: 114..148
e-value: 2.9E-7
score: 28.2
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 177..210
e-value: 3.7E-9
score: 36.1
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 182..216
score: 10.928
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 217..251
score: 8.605
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..111
score: 5.338
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 112..146
score: 12.244
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 147..181
score: 12.54
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 92..139
e-value: 2.5E-13
score: 51.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 140..275
e-value: 1.8E-32
score: 115.1
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 90..273
NoneNo IPR availablePANTHERPTHR24015:SF893SUBFAMILY NOT NAMEDcoord: 90..273
NoneNo IPR availableSUPERFAMILYSSF81901HCP-likecoord: 96..246

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G020260Cla014337Watermelon (97103) v1wmwmbB234
Cla97C01G020260Csa6G507510Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G020260MELO3C007960Melon (DHL92) v3.5.1mewmbB513
Cla97C01G020260ClCG01G020760Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G020260CSPI06G32340Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G020260Cucsa.044120Cucumber (Gy14) v1cgywmbB017
Cla97C01G020260CmaCh07G003920Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G020260CmoCh07G003860Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G020260Lsi01G005460Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G020260CsGy6G031910Cucumber (Gy14) v2cgybwmbB394
Cla97C01G020260MELO3C007960.2Melon (DHL92) v3.6.1medwmbB505
Cla97C01G020260Carg07924Silver-seed gourdcarwmbB0669
Cla97C01G020260CsaV3_6G047710Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G020260Bhi03G000582Wax gourdwgowmbB402
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G020260Watermelon (97103) v2wmbwmbB003
Cla97C01G020260Silver-seed gourdcarwmbB0356
Cla97C01G020260Silver-seed gourdcarwmbB0426
Cla97C01G020260Silver-seed gourdcarwmbB0452
Cla97C01G020260Cucumber (Gy14) v2cgybwmbB171
Cla97C01G020260Cucumber (Gy14) v1cgywmbB561
Cla97C01G020260Cucurbita maxima (Rimu)cmawmbB328
Cla97C01G020260Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G020260Cucurbita moschata (Rifu)cmowmbB310
Cla97C01G020260Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G020260Wild cucumber (PI 183967)cpiwmbB182
Cla97C01G020260Cucumber (Chinese Long) v3cucwmbB180
Cla97C01G020260Cucumber (Chinese Long) v2cuwmbB178
Cla97C01G020260Bottle gourd (USVL1VR-Ls)lsiwmbB392
Cla97C01G020260Melon (DHL92) v3.6.1medwmbB411
Cla97C01G020260Melon (DHL92) v3.5.1mewmbB420
Cla97C01G020260Watermelon (Charleston Gray)wcgwmbB037
Cla97C01G020260Watermelon (97103) v1wmwmbB049
Cla97C01G020260Wax gourdwgowmbB000