Carg07924 (gene) Silver-seed gourd

Overview
NameCarg07924
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionPentatricopeptide repeat-containing protein
LocationCucurbita_argyrosperma_scaffold_066 : 751632 .. 753044 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAATTATCACCATCGTTTCGGTCAGCTATCTCCACCGCGATCGTTAACAAACCACCGCATCCTCCGGCGGCGCCATCGCTCTTGTCCGGTGAGATCCGCTCCTTGTCCAAGAAGCGTCCTCCGAAACATTCCCGGGAAAATCAGTCGGCGCAGAGCTCCGCCCACGGTGAAAAGCCTAAGCTCCCAACGCTGTTTAAATCGGCCAGTCTCGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCAACACCACAAAAGCCCCTCTCGACGTTCGATTCTATAACTCTCTCCTTCAGTCTTACGCTTCAATCGCCTCACTCAATGACTCAATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCGGAACGATCGACCTTCCATGTATTACTCTCTACCTCCGGGAATGGTACTGATTCCTCTCTCGCCTCGGTTCGGCAAATCCTCAATTTCATGGTCACCCAGGGATTCAATCCTGACAGGGCAACAACTGATATTGCTGTGCGATCGCTTTGTTCGGCAGGTCTGATTGATGAAGCTGTTGAATTAGTAAGAGAATTTTCGCAAAAACACTCACCTCCTGATTCTTATACATACAATCATCTCGTTAAACAGCTTTGCAAATCCAGATCTCTGTCTACGGTTTATGATTTTATTGAAGAAATGCGTAGTAGTTGTGGTGCGACTCCCGATCTTGTTACGTATACAATCTTGATTGATAATGTGTGTAATGGCAAGAATCTCCGTGAGGCGACGCGGTTGGTAAGTGTGCTAGCTAAGGAGGGGTTTAAGCCGGATTGCTTTGTTTATAACATAATTATGAAGGGCTATTGTATGCTTGGCAGGGGCGTTGAGGCAATTGGAGTGTATAAGAAAATGAAGGAGGAGGGATTGGAGCCTGATGTTGTGACTTTTAATACATTGATTTTTGGGTTATCGAAGTCAGGGCGAGTTAAGGATGCAAGAAAGTTTCTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCTGTTACTTACACTTCATTGATGAATGGAATGTGTCGCCAGGGTGATGCTCTGGGGGCATTGTCGTTGCTTGAGGAGATGGAGGCAAAGGGATGCAGTCCCAACTCGTGCACATACAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAATCCAGTGATATGAAGCTTGAAGTTGCTTCCTATGCTACTTTTGTGAGGGCACTTTGCAGGAGTGGTAGAATTGCGGAGGCCTATGAAGTATTTGATTATGCAGTTGAGAGTAAAAGTTTGACGGATGTTACTGCATATTCAACGTTAGAGATTACATTGAAGGCTCTCAAGAAAGCAGGGGAGAAAGGCAATGTCATATAA

mRNA sequence

ATGGGGAAATTATCACCATCGTTTCGGTCAGCTATCTCCACCGCGATCGTTAACAAACCACCGCATCCTCCGGCGGCGCCATCGCTCTTGTCCGGTGAGATCCGCTCCTTGTCCAAGAAGCGTCCTCCGAAACATTCCCGGGAAAATCAGTCGGCGCAGAGCTCCGCCCACGGTGAAAAGCCTAAGCTCCCAACGCTGTTTAAATCGGCCAGTCTCGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCAACACCACAAAAGCCCCTCTCGACGTTCGATTCTATAACTCTCTCCTTCAGTCTTACGCTTCAATCGCCTCACTCAATGACTCAATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCGGAACGATCGACCTTCCATGTATTACTCTCTACCTCCGGGAATGGTACTGATTCCTCTCTCGCCTCGGTTCGGCAAATCCTCAATTTCATGGTCACCCAGGGATTCAATCCTGACAGGGCAACAACTGATATTGCTGTGCGATCGCTTTGTTCGGCAGGTCTGATTGATGAAGCTGTTGAATTAGTAAGAGAATTTTCGCAAAAACACTCACCTCCTGATTCTTATACATACAATCATCTCGTTAAACAGCTTTGCAAATCCAGATCTCTGTCTACGGTTTATGATTTTATTGAAGAAATGCGTAGTAGTTGTGGTGCGACTCCCGATCTTGTTACGTATACAATCTTGATTGATAATGTGTGTAATGGCAAGAATCTCCGTGAGGCGACGCGGTTGGTAAGTGTGCTAGCTAAGGAGGGGTTTAAGCCGGATTGCTTTGTTTATAACATAATTATGAAGGGCTATTGTATGCTTGGCAGGGGCGTTGAGGCAATTGGAGTGTATAAGAAAATGAAGGAGGAGGGATTGGAGCCTGATGTTGTGACTTTTAATACATTGATTTTTGGGTTATCGAAGTCAGGGCGAGTTAAGGATGCAAGAAAGTTTCTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCTGTTACTTACACTTCATTGATGAATGGAATGTGTCGCCAGGGTGATGCTCTGGGGGCATTGTCGTTGCTTGAGGAGATGGAGGCAAAGGGATGCAGTCCCAACTCGTGCACATACAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAATCCAGTGATATGAAGCTTGAAGTTGCTTCCTATGCTACTTTTGTGAGGGCACTTTGCAGGAGTGGTAGAATTGCGGAGGCCTATGAAGTATTTGATTATGCAGTTGAGAGTAAAAGTTTGACGGATGTTACTGCATATTCAACGTTAGAGATTACATTGAAGGCTCTCAAGAAAGCAGGGGAGAAAGGCAATGTCATATAA

Coding sequence (CDS)

ATGGGGAAATTATCACCATCGTTTCGGTCAGCTATCTCCACCGCGATCGTTAACAAACCACCGCATCCTCCGGCGGCGCCATCGCTCTTGTCCGGTGAGATCCGCTCCTTGTCCAAGAAGCGTCCTCCGAAACATTCCCGGGAAAATCAGTCGGCGCAGAGCTCCGCCCACGGTGAAAAGCCTAAGCTCCCAACGCTGTTTAAATCGGCCAGTCTCGCAGATGCCAAGAAGCTCTACAGCTCCTTCATCAACACCACAAAAGCCCCTCTCGACGTTCGATTCTATAACTCTCTCCTTCAGTCTTACGCTTCAATCGCCTCACTCAATGACTCAATCTCTTTCCTCCGCCACATGTCCAAAGTTCAACCTTCCTTCTCGCCGGAACGATCGACCTTCCATGTATTACTCTCTACCTCCGGGAATGGTACTGATTCCTCTCTCGCCTCGGTTCGGCAAATCCTCAATTTCATGGTCACCCAGGGATTCAATCCTGACAGGGCAACAACTGATATTGCTGTGCGATCGCTTTGTTCGGCAGGTCTGATTGATGAAGCTGTTGAATTAGTAAGAGAATTTTCGCAAAAACACTCACCTCCTGATTCTTATACATACAATCATCTCGTTAAACAGCTTTGCAAATCCAGATCTCTGTCTACGGTTTATGATTTTATTGAAGAAATGCGTAGTAGTTGTGGTGCGACTCCCGATCTTGTTACGTATACAATCTTGATTGATAATGTGTGTAATGGCAAGAATCTCCGTGAGGCGACGCGGTTGGTAAGTGTGCTAGCTAAGGAGGGGTTTAAGCCGGATTGCTTTGTTTATAACATAATTATGAAGGGCTATTGTATGCTTGGCAGGGGCGTTGAGGCAATTGGAGTGTATAAGAAAATGAAGGAGGAGGGATTGGAGCCTGATGTTGTGACTTTTAATACATTGATTTTTGGGTTATCGAAGTCAGGGCGAGTTAAGGATGCAAGAAAGTTTCTGGACATTATGGCAGAGATGGGTCATTTCCCTGATGCTGTTACTTACACTTCATTGATGAATGGAATGTGTCGCCAGGGTGATGCTCTGGGGGCATTGTCGTTGCTTGAGGAGATGGAGGCAAAGGGATGCAGTCCCAACTCGTGCACATACAATACGTTGCTCCATGGGTTGTCAAAGTCTAGGCTTTTGGATAGAGGGATTGAATTGTATGGTTTGATGAAATCCAGTGATATGAAGCTTGAAGTTGCTTCCTATGCTACTTTTGTGAGGGCACTTTGCAGGAGTGGTAGAATTGCGGAGGCCTATGAAGTATTTGATTATGCAGTTGAGAGTAAAAGTTTGACGGATGTTACTGCATATTCAACGTTAGAGATTACATTGAAGGCTCTCAAGAAAGCAGGGGAGAAAGGCAATGTCATATAA

Protein sequence

MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEKPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSKVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAGLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTILIDNVCNGKNLREATRLVSVLAKEGFKPDCFVYNIIMKGYCMLGRGVEAIGVYKKMKEEGLEPDVVTFNTLIFGLSKSGRVKDARKFLDIMAEMGHFPDAVTYTSLMNGMCRQGDALGALSLLEEMEAKGCSPNSCTYNTLLHGLSKSRLLDRGIELYGLMKSSDMKLEVASYATFVRALCRSGRIAEAYEVFDYAVESKSLTDVTAYSTLEITLKALKKAGEKGNVI
Homology
[Close]
BLAST of Carg07924 vs. NCBI nr
Match: XP_022926982.1 (pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926983.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_022926984.1 pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata])

HSP 1 Score: 508.8 bits (1309), Expect = 1.9e-140
Identity = 264/266 (99.25%), Postives = 265/266 (99.62%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60
           MGKLSPSFRSAIST IVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK
Sbjct: 1   MGKLSPSFRSAISTPIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60

Query: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120
           PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAG 180
           VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPD+ATTDIAVRSLCSAG
Sbjct: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDKATTDIAVRSLCSAG 180

Query: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240
           LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240

Query: 241 TILIDNVCNGKNLREATRLVSVLAKE 267
           TILIDNVCNGKNLREATRLVSVLAKE
Sbjct: 241 TILIDNVCNGKNLREATRLVSVLAKE 266

[Close]
BLAST of Carg07924 vs. NCBI nr
Match: XP_023518399.1 (pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo] >XP_023518400.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 501.5 bits (1290), Expect = 3.1e-138
Identity = 260/266 (97.74%), Postives = 262/266 (98.50%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60
           MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSS HGEK
Sbjct: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120
           PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLL+SYASIASLNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLRSYASIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAG 180
           VQPSFSPERSTFHVLLSTSG GTDSSLASVRQILNFMVTQGFNPD+ATTDIAVRSLCSAG
Sbjct: 121 VQPSFSPERSTFHVLLSTSGTGTDSSLASVRQILNFMVTQGFNPDKATTDIAVRSLCSAG 180

Query: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240
           LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMR SCGATPDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRISCGATPDLVTY 240

Query: 241 TILIDNVCNGKNLREATRLVSVLAKE 267
           TILIDNVCNGKNLRE TRLVSVLAKE
Sbjct: 241 TILIDNVCNGKNLREVTRLVSVLAKE 266

[Close]
BLAST of Carg07924 vs. NCBI nr
Match: XP_023003882.1 (pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003883.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003884.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >XP_023003885.1 pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima])

HSP 1 Score: 488.0 bits (1255), Expect = 3.5e-134
Identity = 253/266 (95.11%), Postives = 258/266 (96.99%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60
           MGKLSPSFRSAISTAIVNKPP+PPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSS HGEK
Sbjct: 1   MGKLSPSFRSAISTAIVNKPPNPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSGHGEK 60

Query: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120
           PKLPTLFKSASLA+AKKLYSSFINTTKAPLDVRFYNSLL SY SIASLNDSISFLRHMSK
Sbjct: 61  PKLPTLFKSASLAEAKKLYSSFINTTKAPLDVRFYNSLLHSYTSIASLNDSISFLRHMSK 120

Query: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAG 180
           VQP+FSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVT GFNPD+AT DIAVRSLCSAG
Sbjct: 121 VQPTFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTHGFNPDKATIDIAVRSLCSAG 180

Query: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240
           LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVY FI EMRSSCGA PDLVTY
Sbjct: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYGFIHEMRSSCGANPDLVTY 240

Query: 241 TILIDNVCNGKNLREATRLVSVLAKE 267
           TILIDNVCNGKNLREATRLVSVLA+E
Sbjct: 241 TILIDNVCNGKNLREATRLVSVLAEE 266

[Close]
BLAST of Carg07924 vs. NCBI nr
Match: XP_022133257.1 (pentatricopeptide repeat-containing protein At2g17670 [Momordica charantia])

HSP 1 Score: 417.2 bits (1071), Expect = 7.6e-113
Identity = 222/266 (83.46%), Postives = 242/266 (90.98%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHP-PAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGE 60
           MGKLSPSFRSAIST I+NKPP P  AAP LLSGE RSLSKK PPK SR+ QSAQSS   E
Sbjct: 1   MGKLSPSFRSAISTTILNKPPQPLAAAPPLLSGEPRSLSKKLPPKPSRKIQSAQSSGPLE 60

Query: 61  KPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMS 120
           KPK  TLFKS+SLADAKKLYSSFI TT+APLD+RFYNSLLQSYASIA+LNDSISFLR+MS
Sbjct: 61  KPKTATLFKSSSLADAKKLYSSFIATTRAPLDLRFYNSLLQSYASIATLNDSISFLRYMS 120

Query: 121 KVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSA 180
           KVQPSFSP+RSTFHVLLSTSGNG+ SSLASV+QILNFMV+ GFNPD+ TTDIAVRSLCSA
Sbjct: 121 KVQPSFSPDRSTFHVLLSTSGNGSGSSLASVQQILNFMVSNGFNPDKVTTDIAVRSLCSA 180

Query: 181 GLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVT 240
           GLIDEAVELV+E S+K SPPDS+TYNHLVKQLCKSR+LSTVY FI+EMRSS G+ PDLVT
Sbjct: 181 GLIDEAVELVKELSRKQSPPDSFTYNHLVKQLCKSRALSTVYGFIDEMRSSFGSKPDLVT 240

Query: 241 YTILIDNVCNGKNLREATRLVSVLAK 266
           YTILIDNVCNGKNLREATRL+SVL +
Sbjct: 241 YTILIDNVCNGKNLREATRLISVLGE 266

[Close]
BLAST of Carg07924 vs. NCBI nr
Match: XP_016899201.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Cucumis melo])

HSP 1 Score: 377.1 bits (967), Expect = 8.7e-101
Identity = 199/263 (75.67%), Postives = 224/263 (85.17%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60
           MGKLSPSFRS +ST++++KP   PAAP L        SKK  PK SR+  S QSS H  K
Sbjct: 1   MGKLSPSFRSILSTSVIHKPTLSPAAPPL-------SSKKPTPKPSRKTPSGQSSGHPVK 60

Query: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120
           PKLPT+FKSASLADAKKLYSSFI+T+KAP ++R +NSLLQSYASIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTVFKSASLADAKKLYSSFISTSKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSK 120

Query: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAG 180
           VQPSFSP++STFH+LLSTS N  DSSLASVR+ILNFMVT GFNPD+ T D+AVRSLCS G
Sbjct: 121 VQPSFSPDQSTFHILLSTSENRPDSSLASVRKILNFMVTNGFNPDKVTADLAVRSLCSVG 180

Query: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240
           L+DEAVELV+E SQKH+P D YTYNHLVKQLCKSR+LSTVY+FI EMRSSCGA PDLVTY
Sbjct: 181 LVDEAVELVKELSQKHTPLDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240

Query: 241 TILIDNVCNGKNLREATRLVSVL 264
           TILIDNVCN  NLREA RLVS+L
Sbjct: 241 TILIDNVCNSNNLREAMRLVSLL 256

[Close]
BLAST of Carg07924 vs. TAIR10
Match: AT2G17670.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 238.0 bits (606), Expect = 1.2e-62
Identity = 128/264 (48.48%), Postives = 174/264 (65.91%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNK-PPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGE 60
           MGK+  SFRS  +  +V K  P PPA P           + R        +  Q++    
Sbjct: 1   MGKVPSSFRSMPANLLVRKTTPSPPAPPRDF--------RNRTAVGGDSAKLPQNTQAPR 60

Query: 61  KPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMS 120
           +P L   FKS +L+DAK L++S   T++ PLD++F+NS+LQSY SIA +ND++   +H+ 
Sbjct: 61  EPSLRNPFKSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHIL 120

Query: 121 KVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSA 180
           K QP+F P RSTF +LLS +    DSS+++V ++LN MV  G  PD+ TTDIAVRSLC  
Sbjct: 121 KSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCET 180

Query: 181 GLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVT 240
           G +DEA +L++E ++KHSPPD+YTYN L+K LCK + L  VY+F++EMR      PDLV+
Sbjct: 181 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 240

Query: 241 YTILIDNVCNGKNLREATRLVSVL 264
           +TILIDNVCN KNLREA  LVS L
Sbjct: 241 FTILIDNVCNSKNLREAMYLVSKL 256

[Close]
BLAST of Carg07924 vs. TAIR10
Match: AT3G09650.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-10
Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 125 FSPERSTFHVLL-STSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAGLID 184
           F+P+   +  L+     NG  +  A + + +     +  +PD  T    V +  +AGL+D
Sbjct: 410 FAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMD 469

Query: 185 EAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTIL 244
            A +++ E ++   P +  TYN L+K  CK   +    D + EM    G  PD+V+Y I+
Sbjct: 470 RARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNII 529

Query: 245 ID 246
           ID
Sbjct: 530 ID 531

[Close]
BLAST of Carg07924 vs. TAIR10
Match: AT1G76280.3 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 5.8e-06
Identity = 42/187 (22.46%), Postives = 87/187 (46.52%), Query Frame = 0 

Query: 95  YNSLLQSYASIASLNDSISFLRHMSKVQPSFSPERSTFHVLLSTSGNGT----DSSLAS- 154
           +N+LL +Y S+     ++  L  M +++    P+  T+ +L S  GN      + ++ S 
Sbjct: 434 FNNLLAAYDSLDQPERAVRVLARMKELK--LRPDMRTYELLFSLFGNVNAPYEEGNMLSQ 493

Query: 155 ------VRQILNFMVTQGFNPDRATTDIAVRSLCSAGLIDEAVELVREFSQKHSPPDSY- 214
                 +  I   M+  GF     +    +R+L + G+++E +  +++     +  + Y 
Sbjct: 494 VDCCKRINAIEMDMMRNGFQHSPISRLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYL 553

Query: 215 ---TYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTILIDNVCNGKNLREATRL 267
              TYN ++  L ++     V +  + M+ SCG   D+ TY I+ID      + + A  L
Sbjct: 554 GTPTYNIVLHSLLEANETDMVINIFKRMK-SCGCPADVATYNIMIDCCSLIHSYKSACAL 613

[Close]
BLAST of Carg07924 vs. TAIR10
Match: AT1G71210.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.4e-04
Identity = 30/102 (29.41%), Postives = 49/102 (48.04%), Query Frame = 0 

Query: 93  RFYNSLLQSYASIASLNDSISFLRHMSKVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQ 152
           R YN  +++      LN+   FL+   K+ P    E   F           +++L  V  
Sbjct: 322 RAYNIWIRALIKAGFLNNPADFLQ---KISPLEGCELEVFRYNSMVFQLLKENNLDGVYD 381

Query: 153 ILNFMVTQGFNPDRATTDIAVRSLCSAGLIDEAVELVREFSQ 195
           IL  M+ +G +P++ T + A+   C AG +DEA+EL R  S+
Sbjct: 382 ILTEMMVRGVSPNKKTMNAALCFFCKAGFVDEALELYRSRSE 420

[Close]
BLAST of Carg07924 vs. TAIR10
Match: AT5G18475.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 44.3 bits (103), Expect = 2.4e-04
Identity = 41/164 (25.00%), Postives = 75/164 (45.73%), Query Frame = 0 

Query: 93  RFYNSL---LQSYASIASLNDSI----SFLRHMSKVQPSFSPERSTFHVLLSTSGNGTDS 152
           RF  SL   L  + S + L+D +    + ++ +++V+PS +   +  ++L+ +       
Sbjct: 121 RFQESLFLNLMRHFSRSDLHDKVMEMFNLIQVIARVKPSLNAISTCLNLLIDSGEVNLSR 180

Query: 153 SLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAGLIDEAVELVREFSQKH-SPPDSYTY 212
            L     +L      G  P+    +I V+  C  G I+ A  +V E  +   S P+S TY
Sbjct: 181 KL-----LLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITY 240

Query: 213 NHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTILIDNVC 249
           + L+  L          +  E+M S  G +PD VT+ ++I+  C
Sbjct: 241 STLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFC 279

[Close]
BLAST of Carg07924 vs. Swiss-Prot
Match: sp|Q84J71|PP161_ARATH (Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX=3702 GN=At2g17670 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-61
Identity = 128/264 (48.48%), Postives = 174/264 (65.91%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNK-PPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGE 60
           MGK+  SFRS  +  +V K  P PPA P           + R        +  Q++    
Sbjct: 1   MGKVPSSFRSMPANLLVRKTTPSPPAPPRDF--------RNRTAVGGDSAKLPQNTQAPR 60

Query: 61  KPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMS 120
           +P L   FKS +L+DAK L++S   T++ PLD++F+NS+LQSY SIA +ND++   +H+ 
Sbjct: 61  EPSLRNPFKSPNLSDAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHIL 120

Query: 121 KVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSA 180
           K QP+F P RSTF +LLS +    DSS+++V ++LN MV  G  PD+ TTDIAVRSLC  
Sbjct: 121 KSQPNFRPGRSTFLILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCET 180

Query: 181 GLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVT 240
           G +DEA +L++E ++KHSPPD+YTYN L+K LCK + L  VY+F++EMR      PDLV+
Sbjct: 181 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVS 240

Query: 241 YTILIDNVCNGKNLREATRLVSVL 264
           +TILIDNVCN KNLREA  LVS L
Sbjct: 241 FTILIDNVCNSKNLREAMYLVSKL 256

[Close]
BLAST of Carg07924 vs. Swiss-Prot
Match: sp|Q9SF38|PP222_ARATH (Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF152 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-09
Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = 0 

Query: 125 FSPERSTFHVLL-STSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAGLID 184
           F+P+   +  L+     NG  +  A + + +     +  +PD  T    V +  +AGL+D
Sbjct: 410 FAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMD 469

Query: 185 EAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTIL 244
            A +++ E ++   P +  TYN L+K  CK   +    D + EM    G  PD+V+Y I+
Sbjct: 470 RARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREMTEDAGIEPDVVSYNII 529

Query: 245 ID 246
           ID
Sbjct: 530 ID 531

[Close]
BLAST of Carg07924 vs. Swiss-Prot
Match: sp|Q9SGQ6|PP126_ARATH (Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana OX=3702 GN=At1g76280 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.0e-04
Identity = 42/187 (22.46%), Postives = 87/187 (46.52%), Query Frame = 0 

Query: 95  YNSLLQSYASIASLNDSISFLRHMSKVQPSFSPERSTFHVLLSTSGNGT----DSSLAS- 154
           +N+LL +Y S+     ++  L  M +++    P+  T+ +L S  GN      + ++ S 
Sbjct: 406 FNNLLAAYDSLDQPERAVRVLARMKELK--LRPDMRTYELLFSLFGNVNAPYEEGNMLSQ 465

Query: 155 ------VRQILNFMVTQGFNPDRATTDIAVRSLCSAGLIDEAVELVREFSQKHSPPDSY- 214
                 +  I   M+  GF     +    +R+L + G+++E +  +++     +  + Y 
Sbjct: 466 VDCCKRINAIEMDMMRNGFQHSPISRLNVLRALGAEGMVNEMIRHLQKAENLSAHSNMYL 525

Query: 215 ---TYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTYTILIDNVCNGKNLREATRL 267
              TYN ++  L ++     V +  + M+ SCG   D+ TY I+ID      + + A  L
Sbjct: 526 GTPTYNIVLHSLLEANETDMVINIFKRMK-SCGCPADVATYNIMIDCCSLIHSYKSACAL 585

[Close]
BLAST of Carg07924 vs. TrEMBL
Match: tr|A0A1S4DT84|A0A1S4DT84_CUCME (pentatricopeptide repeat-containing protein At2g17670 OS=Cucumis melo OX=3656 GN=LOC103485180 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.8e-101
Identity = 199/263 (75.67%), Postives = 224/263 (85.17%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGEK 60
           MGKLSPSFRS +ST++++KP   PAAP L        SKK  PK SR+  S QSS H  K
Sbjct: 1   MGKLSPSFRSILSTSVIHKPTLSPAAPPL-------SSKKPTPKPSRKTPSGQSSGHPVK 60

Query: 61  PKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMSK 120
           PKLPT+FKSASLADAKKLYSSFI+T+KAP ++R +NSLLQSYASIA+LNDSISFLRHMSK
Sbjct: 61  PKLPTVFKSASLADAKKLYSSFISTSKAPFNLRVHNSLLQSYASIATLNDSISFLRHMSK 120

Query: 121 VQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSAG 180
           VQPSFSP++STFH+LLSTS N  DSSLASVR+ILNFMVT GFNPD+ T D+AVRSLCS G
Sbjct: 121 VQPSFSPDQSTFHILLSTSENRPDSSLASVRKILNFMVTNGFNPDKVTADLAVRSLCSVG 180

Query: 181 LIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVTY 240
           L+DEAVELV+E SQKH+P D YTYNHLVKQLCKSR+LSTVY+FI EMRSSCGA PDLVTY
Sbjct: 181 LVDEAVELVKELSQKHTPLDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTY 240

Query: 241 TILIDNVCNGKNLREATRLVSVL 264
           TILIDNVCN  NLREA RLVS+L
Sbjct: 241 TILIDNVCNSNNLREAMRLVSLL 256

[Close]
BLAST of Carg07924 vs. TrEMBL
Match: tr|A0A0A0KHF8|A0A0A0KHF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 7.6e-93
Identity = 187/264 (70.83%), Postives = 212/264 (80.30%), Query Frame = 0 

Query: 1   MGKLSPSFRSAIST-AIVNKPPHPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHGE 60
           MGKLSPSFRS +S+  ++NKPPH PAAP L        SKK  PK SR+  S QSS H E
Sbjct: 1   MGKLSPSFRSILSSNTVINKPPHSPAAPPL-------SSKKATPKPSRKTPSGQSSGHPE 60

Query: 61  KPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHMS 120
           KPKLPT+FKSASLADAKKLYSSF++ TKAP ++R +NSLLQSYASIA+LNDSISFLRHMS
Sbjct: 61  KPKLPTVFKSASLADAKKLYSSFVSATKAPFNLRVHNSLLQSYASIATLNDSISFLRHMS 120

Query: 121 KVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCSA 180
           KVQPSFSP++STFH+LLSTSGN  DS+LASV+QILNFMVT GFNPD+ T D+AVRSLCS 
Sbjct: 121 KVQPSFSPDQSTFHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCSV 180

Query: 181 GLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLVT 240
           GL+DEAVELV+E SQKH+PPD YTYNHLVKQLCKSR+LSTVY+FI EMRSSCGA      
Sbjct: 181 GLVDEAVELVKELSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAXXXXXX 240

Query: 241 YTILIDNVCNGKNLREATRLVSVL 264
                       NLREA RLVS+L
Sbjct: 241 XXXXXXXXXXXXNLREAMRLVSLL 257

[Close]
BLAST of Carg07924 vs. TrEMBL
Match: tr|A0A061DL82|A0A061DL82_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_000098 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 8.4e-76
Identity = 156/265 (58.87%), Postives = 195/265 (73.58%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPP--HPPAAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHG 60
           MGK+ PSFR AIS +++ + P   P A P          +KKRP +HS+  Q++  S   
Sbjct: 1   MGKIPPSFRPAISNSLIKRQPLESPTAIPHQFP---EKTTKKRPSQHSKTAQASLGSRKA 60

Query: 61  EKPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHM 120
           E      LFKS  L+ AKK+++S + TTKAP+D+RF+N+LLQSYAS++++NDSISFL HM
Sbjct: 61  E-----PLFKSPDLSSAKKVFNSIVVTTKAPIDLRFHNTLLQSYASVSTVNDSISFLHHM 120

Query: 121 SKVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCS 180
            K  PSFSP+RST+H+LLS S    DSSL+ VRQ LN MVT G  P++ TTD+A+RSLC 
Sbjct: 121 VKAHPSFSPDRSTYHILLSQSCKAPDSSLSPVRQTLNLMVTNGLKPNQVTTDVAIRSLCE 180

Query: 181 AGLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLV 240
           AG ID AVELV+E S KHSPPD++T+N LVK LCK R+LSTVY FI++M+SS G  PDLV
Sbjct: 181 AGRIDHAVELVKELSLKHSPPDNFTFNFLVKNLCKCRTLSTVYGFIDDMKSSFGIKPDLV 240

Query: 241 TYTILIDNVCNGKNLREATRLVSVL 264
           TYTILIDNVCN KNLREA RLV VL
Sbjct: 241 TYTILIDNVCNSKNLREAMRLVGVL 257

[Close]
BLAST of Carg07924 vs. TrEMBL
Match: tr|A0A1R3GCE7|A0A1R3GCE7_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27053 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.7e-74
Identity = 156/265 (58.87%), Postives = 195/265 (73.58%), Query Frame = 0 

Query: 1   MGKLSPSFRSAISTAIVNKPPHPP--AAPSLLSGEIRSLSKKRPPKHSRENQSAQSSAHG 60
           MGK+ PSFR+AIS ++V K P  P  A P  + G+     KK+P +HS+  Q++  S   
Sbjct: 1   MGKVPPSFRTAISNSLVKKIPLEPQTAIPRQVPGK---TPKKKPSQHSKTFQASVGSRRT 60

Query: 61  EKPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFLRHM 120
           E     +LFKS  L+ AKK+ SS + +TKAPLDVRF+N+LLQSYA +++LNDSIS L HM
Sbjct: 61  E-----SLFKSPDLSSAKKVLSSIVASTKAPLDVRFHNALLQSYAFVSTLNDSISLLHHM 120

Query: 121 SKVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRSLCS 180
            K QPSFSP+RST+H+LLS S    DSSL+ V Q LN MVT GF P++ T D+A+RSLC 
Sbjct: 121 LKTQPSFSPDRSTYHILLSQSCKAADSSLSPVHQTLNLMVTNGFQPNQVTVDVAIRSLCD 180

Query: 181 AGLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATPDLV 240
           AG ID A+ELV+E S KHSPPD++T+N LVK LCK  +LSTVY FI++M++S G  PDLV
Sbjct: 181 AGRIDHALELVKELSLKHSPPDNFTFNFLVKNLCKCTTLSTVYGFIDDMKTSFGIKPDLV 240

Query: 241 TYTILIDNVCNGKNLREATRLVSVL 264
           TYTILIDNVCN KNLREA RLV VL
Sbjct: 241 TYTILIDNVCNSKNLREAMRLVGVL 257

[Close]
BLAST of Carg07924 vs. TrEMBL
Match: tr|A5BBA7|A5BBA7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032887 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 8.7e-73
Identity = 152/270 (56.30%), Postives = 197/270 (72.96%), Query Frame = 0 

Query: 1   MGKLSPSFRSA---ISTAIVNKPPHPPAAPSLLS--GEIRSLSKKRPPKHSRENQSAQSS 60
           MGK+ PSFR++   ++T + N P   P   ++L    +     KKRP    +  ++    
Sbjct: 1   MGKIPPSFRTSTVPVTTLLKNPPAVLPKQSTVLETPQKPHHFPKKRPQPSGKTKKTRTPI 60

Query: 61  AHGEKPKLPTLFKSASLADAKKLYSSFINTTKAPLDVRFYNSLLQSYASIASLNDSISFL 120
              E PK P +F S +L DAKKL++S   T+  PLD+RF+N+LLQSY+SI+++NDSISFL
Sbjct: 61  ---EDPKSPVIFNSPNLLDAKKLFASITTTSTTPLDLRFHNALLQSYSSISTVNDSISFL 120

Query: 121 RHMSKVQPSFSPERSTFHVLLSTSGNGTDSSLASVRQILNFMVTQGFNPDRATTDIAVRS 180
           RHM K QPSFSPERST+H+LLS S    +S L++V Q LN MVT GF PDR TTDIAVRS
Sbjct: 121 RHMIKSQPSFSPERSTYHILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAVRS 180

Query: 181 LCSAGLIDEAVELVREFSQKHSPPDSYTYNHLVKQLCKSRSLSTVYDFIEEMRSSCGATP 240
           LCSAG  + A+ELV+E S KHSPPDS+TYN +++ LCK+R+LSTVY+FI+E+++S    P
Sbjct: 181 LCSAGREEHAIELVKELSLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKP 240

Query: 241 DLVTYTILIDNVCNGKNLREATRLVSVLAK 266
           DLVTYTILIDNVCNGKNLREATRL+ VL +
Sbjct: 241 DLVTYTILIDNVCNGKNLREATRLLEVLGE 267

The following BLAST results are available for this feature:
BLAST of Carg07924 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022926982.11.9e-14099.25pentatricopeptide repeat-containing protein At2g17670 [Cucurbita moschata] >XP_0... [more]
XP_023518399.13.1e-13897.74pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita pepo subsp... [more]
XP_023003882.13.5e-13495.11pentatricopeptide repeat-containing protein At2g17670-like [Cucurbita maxima] >X... [more]
XP_022133257.17.6e-11383.46pentatricopeptide repeat-containing protein At2g17670 [Momordica charantia][more]
XP_016899201.18.7e-10175.67PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Cucumis melo][more]
BLAST of Carg07924 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G17670.11.2e-6248.48Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G09650.13.0e-1028.69Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G76280.35.8e-0622.46Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G71210.12.4e-0429.41Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G18475.12.4e-0425.00Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Carg07924 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q84J71|PP161_ARATH2.1e-6148.48Pentatricopeptide repeat-containing protein At2g17670 OS=Arabidopsis thaliana OX... [more]
sp|Q9SF38|PP222_ARATH5.4e-0928.69Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidop... [more]
sp|Q9SGQ6|PP126_ARATH1.0e-0422.46Pentatricopeptide repeat-containing protein At1g76280 OS=Arabidopsis thaliana OX... [more]
BLAST of Carg07924 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DT84|A0A1S4DT84_CUCME5.8e-10175.67pentatricopeptide repeat-containing protein At2g17670 OS=Cucumis melo OX=3656 GN... [more]
tr|A0A0A0KHF8|A0A0A0KHF8_CUCSA7.6e-9370.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507510 PE=4 SV=1[more]
tr|A0A061DL82|A0A061DL82_THECC8.4e-7658.87Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao OX=36... [more]
tr|A0A1R3GCE7|A0A1R3GCE7_COCAP2.7e-7458.87Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_27053 PE=4 ... [more]
tr|A5BBA7|A5BBA7_VITVI8.7e-7356.30Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_032887 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg07924-RACarg07924-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 409..436
e-value: 8.3E-6
score: 25.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 199..249
e-value: 1.7E-10
score: 40.8
coord: 340..389
e-value: 1.4E-16
score: 60.3
coord: 270..319
e-value: 2.4E-14
score: 53.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 173..192
e-value: 0.45
score: 10.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 202..236
e-value: 4.9E-4
score: 18.1
coord: 378..409
e-value: 2.3E-6
score: 25.4
coord: 308..342
e-value: 9.4E-7
score: 26.6
coord: 274..307
e-value: 4.0E-10
score: 37.2
coord: 238..272
e-value: 8.0E-4
score: 17.4
coord: 343..377
e-value: 2.8E-10
score: 37.7
coord: 414..442
e-value: 2.2E-4
score: 19.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 341..375
score: 13.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 271..305
score: 12.584
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 128..164
score: 5.437
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..230
score: 8.977
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 91..121
score: 7.048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 411..445
score: 9.065
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 376..410
score: 10.424
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..270
score: 10.194
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..340
score: 12.025
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 336..469
e-value: 8.0E-31
score: 109.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 261..335
e-value: 3.6E-21
score: 77.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..63
NoneNo IPR availablePANTHERPTHR24015:SF893SUBFAMILY NOT NAMEDcoord: 1..468
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..468

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg07924Cla014337Watermelon (97103) v1carwmB0642
Carg07924Csa6G507510Cucumber (Chinese Long) v2carcuB0663
Carg07924MELO3C007960Melon (DHL92) v3.5.1carmeB0643
Carg07924ClCG01G020760Watermelon (Charleston Gray)carwcgB0623
Carg07924CSPI06G32340Wild cucumber (PI 183967)carcpiB0672
Carg07924Cucsa.044120Cucumber (Gy14) v1carcgyB0714
Carg07924CmaCh07G003920Cucurbita maxima (Rimu)carcmaB0914
Carg07924CmaCh03G006340Cucurbita maxima (Rimu)carcmaB0912
Carg07924CmoCh03G006600Cucurbita moschata (Rifu)carcmoB0886
Carg07924CmoCh07G003860Cucurbita moschata (Rifu)carcmoB0888
Carg07924Lsi01G005460Bottle gourd (USVL1VR-Ls)carlsiB585
Carg07924Cp4.1LG19g08460Cucurbita pepo (Zucchini)carcpeB0915
Carg07924CsGy6G031910Cucumber (Gy14) v2carcgybB0640
Carg07924MELO3C007960.2Melon (DHL92) v3.6.1carmedB0653
Carg07924CsaV3_6G047710Cucumber (Chinese Long) v3carcucB0674
Carg07924Cla97C01G020260Watermelon (97103) v2carwmbB0669
Carg07924Bhi03G000582Wax gourdcarwgoB0759
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg07924Carg00544Silver-seed gourdcarcarB425
The following block(s) are covering this gene:
GeneOrganismBlock
Carg07924Silver-seed gourdcarcarB122
Carg07924Silver-seed gourdcarcarB371
Carg07924Silver-seed gourdcarcarB441
Carg07924Cucumber (Gy14) v2carcgybB0639
Carg07924Cucumber (Gy14) v1carcgyB0718
Carg07924Cucurbita maxima (Rimu)carcmaB0909
Carg07924Cucurbita pepo (Zucchini)carcpeB0913
Carg07924Cucurbita pepo (Zucchini)carcpeB0917
Carg07924Wild cucumber (PI 183967)carcpiB0671
Carg07924Cucumber (Chinese Long) v2carcuB0662
Carg07924Cucumber (Chinese Long) v3carcucB0673
Carg07924Bottle gourd (USVL1VR-Ls)carlsiB588
Carg07924Bottle gourd (USVL1VR-Ls)carlsiB589
Carg07924Melon (DHL92) v3.5.1carmeB0641
Carg07924Melon (DHL92) v3.6.1carmedB0651
Carg07924Watermelon (Charleston Gray)carwcgB0622
Carg07924Watermelon (97103) v1carwmB0639
Carg07924Watermelon (97103) v2carwmbB0670