Cla97C01G011970 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G011970
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat
Location	Cla97Chr01 : 24772485 .. 24773972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCGTTTTGTTAGCAACTTCAGTCTCTTCCATTCTGGTGAAAGGAAATGGAGAACTTGGTTGCCAGACTACGATGGCTCATTTCAATACCAACTCCAGAAGACACCCACCCAAAAACCTCCTCTATCCACGACGGGCCAAGCTTCCTCCTGATCCTATCGTCGTCAACCAATTCTTGAACAACAAAATCTCTGCCCCTTCCCCATCCTTCACTGATTTAACTTCCTCTGAGATTTCCCAACTCCCCGAAGGTGAAGAGGATGAGCATGAAGAAATCTATGCTTATGACTATAAAGATACTGATGTTGTTTGGGATTCGGATGAAATTGAAGCTATTTCATCACTCTTTCAAGGGAGAATTCCTCAGAAACCTGGTACATTGAACAGGGACAGACCTCTTCCTCTTCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCTAAAAATCCGCCCAAGAACAGTGGTCTCTTCGCGTGCTTTGATGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCCAGGGCGATTAGAGATTTGTCCCCGGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCTTTTTTGCAAAAGGGCTCTCTATCATTGACGATCAAGGAACTAGGTCATATGGGTCTTCCTGATAGAGCTTTAAAGACGTTCTGTTGGGCACAAGAACAACCTCGCCTCTTCCCGGATGATCGTGTTTTGGCCACAACGGTTGAGGTCCTTGCAAGGAACCATGAACTGAAGGTACCTCTAAACTTGGAAGAGTTCACTGAACTTGCTAGTCGTGGTGTGCTTGAGGCAATGGTGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGCGTAAGAGAATGTTGGATCCCAGCGTTTATGTGAAGTTAATACTGGAGCTTGGGAAGAACCCTGATAAAAACATGTTGGTTCTTACCTTAATGGATGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAGCAAGATACTACAGCTATAATTAAGGTATGCACAAGGCTTGGTAAATCTGAAATTGCTGAGGAACTTCATAGCTGGTATGTTGAATCTGGACATGAACCTAGTGTGGTTATGTATACTGCCTTAGTTCATAATCGCTACTCAGACAAGAAATACAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCATATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTGCCCCTACATATGATGTCTATAGGAATCTGATCACCATTTATTTAGTTTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCAGAGAATGCTGGATTTATCATGGATAAACAAATTACTTCAATGCTGTTGCAAGCAAAAAGATGA

mRNA sequence

ATGGATTCCGTTTTGTTAGCAACTTCAGTCTCTTCCATTCTGGTGAAAGGAAATGGAGAACTTGGTTGCCAGACTACGATGGCTCATTTCAATACCAACTCCAGAAGACACCCACCCAAAAACCTCCTCTATCCACGACGGGCCAAGCTTCCTCCTGATCCTATCGTCGTCAACCAATTCTTGAACAACAAAATCTCTGCCCCTTCCCCATCCTTCACTGATTTAACTTCCTCTGAGATTTCCCAACTCCCCGAAGGTGAAGAGGATGAGCATGAAGAAATCTATGCTTATGACTATAAAGATACTGATGTTGTTTGGGATTCGGATGAAATTGAAGCTATTTCATCACTCTTTCAAGGGAGAATTCCTCAGAAACCTGGTACATTGAACAGGGACAGACCTCTTCCTCTTCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCTAAAAATCCGCCCAAGAACAGTGGTCTCTTCGCGTGCTTTGATGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCCAGGGCGATTAGAGATTTGTCCCCGGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCTTTTTTGCAAAAGGGCTCTCTATCATTGACGATCAAGGAACTAGGTCATATGGGTCTTCCTGATAGAGCTTTAAAGACGTTCTGTTGGGCACAAGAACAACCTCGCCTCTTCCCGGATGATCGTGTTTTGGCCACAACGGTTGAGGTCCTTGCAAGGAACCATGAACTGAAGGTACCTCTAAACTTGGAAGAGTTCACTGAACTTGCTAGTCGTGGTGTGCTTGAGGCAATGGTGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGCGTAAGAGAATGTTGGATCCCAGCGTTTATGTGAAGTTAATACTGGAGCTTGGGAAGAACCCTGATAAAAACATGTTGGTTCTTACCTTAATGGATGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAGCAAGATACTACAGCTATAATTAAGGTATGCACAAGGCTTGGTAAATCTGAAATTGCTGAGGAACTTCATAGCTGGTATGTTGAATCTGGACATGAACCTAGTGTGGTTATGTATACTGCCTTAGTTCATAATCGCTACTCAGACAAGAAATACAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCATATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTGCCCCTACATATGATGTCTATAGGAATCTGATCACCATTTATTTAGTTTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCAGAGAATGCTGGATTTATCATGGATAAACAAATTACTTCAATGCTGTTGCAAGCAAAAAGATGA

Coding sequence (CDS)

ATGGATTCCGTTTTGTTAGCAACTTCAGTCTCTTCCATTCTGGTGAAAGGAAATGGAGAACTTGGTTGCCAGACTACGATGGCTCATTTCAATACCAACTCCAGAAGACACCCACCCAAAAACCTCCTCTATCCACGACGGGCCAAGCTTCCTCCTGATCCTATCGTCGTCAACCAATTCTTGAACAACAAAATCTCTGCCCCTTCCCCATCCTTCACTGATTTAACTTCCTCTGAGATTTCCCAACTCCCCGAAGGTGAAGAGGATGAGCATGAAGAAATCTATGCTTATGACTATAAAGATACTGATGTTGTTTGGGATTCGGATGAAATTGAAGCTATTTCATCACTCTTTCAAGGGAGAATTCCTCAGAAACCTGGTACATTGAACAGGGACAGACCTCTTCCTCTTCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCTAAAAATCCGCCCAAGAACAGTGGTCTCTTCGCGTGCTTTGATGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCCAGGGCGATTAGAGATTTGTCCCCGGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCTTTTTTGCAAAAGGGCTCTCTATCATTGACGATCAAGGAACTAGGTCATATGGGTCTTCCTGATAGAGCTTTAAAGACGTTCTGTTGGGCACAAGAACAACCTCGCCTCTTCCCGGATGATCGTGTTTTGGCCACAACGGTTGAGGTCCTTGCAAGGAACCATGAACTGAAGGTACCTCTAAACTTGGAAGAGTTCACTGAACTTGCTAGTCGTGGTGTGCTTGAGGCAATGGTGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTTGTAGCTGCGAAGAAGCGTAAGAGAATGTTGGATCCCAGCGTTTATGTGAAGTTAATACTGGAGCTTGGGAAGAACCCTGATAAAAACATGTTGGTTCTTACCTTAATGGATGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAGCAAGATACTACAGCTATAATTAAGGTATGCACAAGGCTTGGTAAATCTGAAATTGCTGAGGAACTTCATAGCTGGTATGTTGAATCTGGACATGAACCTAGTGTGGTTATGTATACTGCCTTAGTTCATAATCGCTACTCAGACAAGAAATACAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGGCTGCAAACTGTCCTTTTGATCTTCCTGCATATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTGCCCCTACATATGATGTCTATAGGAATCTGATCACCATTTATTTAGTTTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCAGAGAATGCTGGATTTATCATGGATAAACAAATTACTTCAATGCTGTTGCAAGCAAAAAGATGA

Protein sequence

MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEGEEDEHEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR

Homology

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BLAST of Cla97C01G011970 vs. NCBI nr
Match: XP_008462173.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462181.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462189.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902994.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902996.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo])

HSP 1 Score: 852.4 bits (2201), Expect = 7.5e-244
Identity = 436/496 (87.90%), Postives = 462/496 (93.15%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           M S++ ATSVSSILVKGNG +GCQ TM HF  NSRR PPKNLL PRRAKLPPDP  VNQF
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDP-AVNQF 60

Query: 61  LNNKISAPSPSFTDLTSSEISQLPEGEEDEHEEIYAYDY-KDTDVVWDSDEIEAISSLFQ 120
           LNNK SAPSPSFTDL SS+I Q      DEHEEI+AYDY KDTDVVWDSDEIEAISSLFQ
Sbjct: 61  LNNKTSAPSPSFTDLISSKIFQ------DEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQ 120

Query: 121 GRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGL 180
           GRIPQKPG LNR+RPLPLPLPHKLRPPRLPN KIRP T VSSRAL+SK+VYK PDFLIGL
Sbjct: 121 GRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGL 180

Query: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFP 240
           ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFP
Sbjct: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFP 240

Query: 241 DDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAK 300
           DDRVLA+TVEVL+RNHELKVP+NLEEFT+LASRGVLEAM+RGFIKGGSLNLAWKLLVAAK
Sbjct: 241 DDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAK 300

Query: 301 KRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGK 360
           K KRMLDPSVYVKLILELGKNPDKN+LVLTL++ELGQREALKLNQQD+T IIKVCTRL K
Sbjct: 301 KGKRMLDPSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRK 360

Query: 361 SEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSV 420
            EIAE+L+ WYVESGHEPS+VMYTALVH+RYSD+KYREALSLVWEME+ANCPFDLPAY+V
Sbjct: 361 FEIAEKLYCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNV 420

Query: 421 VIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAG 480
           VIKLFVALGDLSRAVRYFAKLKEAGF+PTYDVYRN+ITIYLVSGRLAK KEIYKEAENAG
Sbjct: 421 VIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSGRLAKSKEIYKEAENAG 480

Query: 481 FIMDKQITSMLLQAKR 496
           FIMDKQITSMLLQAKR
Sbjct: 481 FIMDKQITSMLLQAKR 489

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BLAST of Cla97C01G011970 vs. NCBI nr
Match: XP_004139567.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_011654198.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_011654204.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >KGN64877.1 hypothetical protein Csa_1G144300 [Cucumis sativus])

HSP 1 Score: 851.3 bits (2198), Expect = 1.7e-243
Identity = 433/496 (87.30%), Postives = 461/496 (92.94%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           MDS++ ATSVSSILVKGNG +GCQ TM HF  NSRR PPKNLL PRRAKLPP+P  VNQF
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNP-AVNQF 60

Query: 61  LNNKISAPSPSFTDLTSSEISQLPEGEEDEHEEIYAYDY-KDTDVVWDSDEIEAISSLFQ 120
            NNK SAPSP FTDL SS+I Q      DEHEEI+A+DY KDTDVVWDSDEIEAISSLFQ
Sbjct: 61  FNNKTSAPSPPFTDLISSKIFQ------DEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQ 120

Query: 121 GRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGL 180
           GRIPQKPG LNR+RPLPLPLPHKLRPPRLPN KIRP TVVSSRAL+SKQVYK PDFLIGL
Sbjct: 121 GRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGL 180

Query: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFP 240
           AR IRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCWAQEQ RLFP
Sbjct: 181 AREIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFP 240

Query: 241 DDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAK 300
           DDRVLA+TVEVL+RNHELKV +NLEEFT+LASRGVLEAM+RGFI+GGSLNLAWKLLVAAK
Sbjct: 241 DDRVLASTVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAK 300

Query: 301 KRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGK 360
           K KRMLDPSVYVKLILELGKNPDKNMLVLTL++ELGQREALKLNQQD T I+KVCTRLGK
Sbjct: 301 KGKRMLDPSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGK 360

Query: 361 SEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSV 420
            EIAE+L+SWYVESGHEPS+VMYTALVH+RYSD+KYREALSLVWEME+ NCPFDLPAYSV
Sbjct: 361 FEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSV 420

Query: 421 VIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAG 480
           VIKLFVALGDLSRAVRYFAKLKEAGF+PTY+VYRN+ITIYLVSGRLAKCKEIYKEAENAG
Sbjct: 421 VIKLFVALGDLSRAVRYFAKLKEAGFSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAG 480

Query: 481 FIMDKQITSMLLQAKR 496
           F+MDKQITSMLLQAKR
Sbjct: 481 FMMDKQITSMLLQAKR 489

[Close]

BLAST of Cla97C01G011970 vs. NCBI nr
Match: XP_022951807.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita moschata])

HSP 1 Score: 801.2 bits (2068), Expect = 2.0e-228
Identity = 412/502 (82.07%), Postives = 443/502 (88.25%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           MDS+   T++SSILVK NG + CQ  +AHF TNSRR PPKNLLYPRR KLPPDP  VNQF
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDP-GVNQF 60

Query: 61  LNNKISAPSP--SFTDLTSSEISQLPEGEEDEHEE-----IYAYDYKDTDVVWDSDEIEA 120
           L  + S P P  SF DL SSE   LPE E DE EE      +A D  D+DVVWDS+EIEA
Sbjct: 61  LKKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEA 120

Query: 121 ISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCP 180
           I+SLF+GRIPQKPG LNR+RPLPLPLPHKLRPP LPN KIRPRT VSSRALMSKQVYK P
Sbjct: 121 ITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRP 180

Query: 181 DFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQE 240
           DFLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QE
Sbjct: 181 DFLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQE 240

Query: 241 QPRLFPDDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWK 300
           QPRL+PDDRVLA+TVEVLARNHELK+P NL+EFT+LASRGVLEAM+RGFIKGG L+LAWK
Sbjct: 241 QPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWK 300

Query: 301 LLVAAKKRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKV 360
           LLVAAK  KRMLDPSVYVKLILE+GKNPDKNMLVL L+DELGQREAL LNQQDT+AIIKV
Sbjct: 301 LLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKV 360

Query: 361 CTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFD 420
            TRLGK EIAE L+SWYVESGHEPSVVMYTALVHNRYS++KYREALS+VWEMEAAN PFD
Sbjct: 361 STRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFD 420

Query: 421 LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYK 480
           LPAYSVV+KLFVALGDLSRAVRYFAKLKEAGF PTY +YRNLITIYL +GRLAKCKEIYK
Sbjct: 421 LPAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYK 480

Query: 481 EAENAGFIMDKQITSMLLQAKR 496
           EAENAG++MDKQITSMLLQAKR
Sbjct: 481 EAENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Cla97C01G011970 vs. NCBI nr
Match: XP_023537574.1 (pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pepo] >XP_023537576.1 pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 797.3 bits (2058), Expect = 2.9e-227
Identity = 410/502 (81.67%), Postives = 440/502 (87.65%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           MDS+   T++SSILVK NG + CQ  MAHF TNSRR PPKNLLYPRR KLPPDP  VNQF
Sbjct: 1   MDSLFSTTTISSILVKRNGGVSCQIPMAHFQTNSRRRPPKNLLYPRRTKLPPDP-GVNQF 60

Query: 61  LNNKISAPSP--SFTDLTSSEISQLPEGEEDEHEE-----IYAYDYKDTDVVWDSDEIEA 120
           L  + S P P  S  DL  SE    PE E DE EE      +A D  D+D+VWDS+EIEA
Sbjct: 61  LKKRTSGPHPDTSLPDLIPSEKIGPPEEELDELEETAADNYFANDDNDSDIVWDSEEIEA 120

Query: 121 ISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCP 180
           I+SLF+GRIPQKPG LNR+RPLPLPLPHKLRPP LPN KIRPRT VSSRALMSKQVYK P
Sbjct: 121 ITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRP 180

Query: 181 DFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQE 240
           DFLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QE
Sbjct: 181 DFLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQE 240

Query: 241 QPRLFPDDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWK 300
           QPRL+PDDRVLA+TVEVLARNHELK+P NL+EFT+LASRGVLEAM+RGFIKGG L+LAWK
Sbjct: 241 QPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWK 300

Query: 301 LLVAAKKRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKV 360
           LLVAAK  KRMLDPSVYVKLILE+GKNPDKNMLVL L+DELGQREAL LNQQDT+AIIKV
Sbjct: 301 LLVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKV 360

Query: 361 CTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFD 420
            TRLGK EIAE L+SWYVESGHEPSVVMYTALVHNRYS++KYREALS+VWEMEAA CPFD
Sbjct: 361 STRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAAKCPFD 420

Query: 421 LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYK 480
           LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGF PTY +YRNLITIYL +GRLAKCKEIYK
Sbjct: 421 LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYK 480

Query: 481 EAENAGFIMDKQITSMLLQAKR 496
           EAENAG++MDKQITSMLLQAKR
Sbjct: 481 EAENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Cla97C01G011970 vs. NCBI nr
Match: XP_023001961.1 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita maxima])

HSP 1 Score: 795.8 bits (2054), Expect = 8.3e-227
Identity = 409/502 (81.47%), Postives = 443/502 (88.25%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           MDS+   T+VSSILVK NG + CQ  MAHF TNS+R PPKNLLYPRR KLPPDP  VNQF
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDP-GVNQF 60

Query: 61  LNNKISAPSP--SFTDLTSSEISQLPEGEEDEHEE-----IYAYDYKDTDVVWDSDEIEA 120
           L  + S P P  S+ DL  SE   LPE E DE EE      +A D  D+D+VWD +EIEA
Sbjct: 61  LKKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEA 120

Query: 121 ISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCP 180
           I+SLF+GRIPQKPG LNR+RPLPLPLPHKLRPP LPN KIRPRT VSSRALMSKQVYK P
Sbjct: 121 ITSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRP 180

Query: 181 DFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQE 240
           DFLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QE
Sbjct: 181 DFLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQE 240

Query: 241 QPRLFPDDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWK 300
           QPRL+PDDRVLA+TVEVLARNHELK+P NL+EFT+LASRGVLEAM+RGFIKGG L+LAWK
Sbjct: 241 QPRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWK 300

Query: 301 LLVAAKKRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKV 360
           LLVAAK  KRMLDPSV+VKLILE+GKNPDKNMLVL L+DELGQREAL L+QQDT+AIIKV
Sbjct: 301 LLVAAKNGKRMLDPSVHVKLILEIGKNPDKNMLVLALLDELGQREALNLSQQDTSAIIKV 360

Query: 361 CTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFD 420
            TRLGK EIAE+L+SWYVESGHEPSVVMYTALVHNRYS++KYREALS+VWEMEAANCPFD
Sbjct: 361 STRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFD 420

Query: 421 LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYK 480
           LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGF PTY +YRNLITIYL +GRLAKCKEIYK
Sbjct: 421 LPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYK 480

Query: 481 EAENAGFIMDKQITSMLLQAKR 496
           EAENAG++MDKQITSMLLQAKR
Sbjct: 481 EAENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Cla97C01G011970 vs. TrEMBL
Match: tr|A0A1S3CGD0|A0A1S3CGD0_CUCME (pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN=LOC103500594 PE=4 SV=1)

HSP 1 Score: 852.4 bits (2201), Expect = 4.9e-244
Identity = 436/496 (87.90%), Postives = 462/496 (93.15%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           M S++ ATSVSSILVKGNG +GCQ TM HF  NSRR PPKNLL PRRAKLPPDP  VNQF
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDP-AVNQF 60

Query: 61  LNNKISAPSPSFTDLTSSEISQLPEGEEDEHEEIYAYDY-KDTDVVWDSDEIEAISSLFQ 120
           LNNK SAPSPSFTDL SS+I Q      DEHEEI+AYDY KDTDVVWDSDEIEAISSLFQ
Sbjct: 61  LNNKTSAPSPSFTDLISSKIFQ------DEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQ 120

Query: 121 GRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGL 180
           GRIPQKPG LNR+RPLPLPLPHKLRPPRLPN KIRP T VSSRAL+SK+VYK PDFLIGL
Sbjct: 121 GRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGL 180

Query: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFP 240
           ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFP
Sbjct: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFP 240

Query: 241 DDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAK 300
           DDRVLA+TVEVL+RNHELKVP+NLEEFT+LASRGVLEAM+RGFIKGGSLNLAWKLLVAAK
Sbjct: 241 DDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAK 300

Query: 301 KRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGK 360
           K KRMLDPSVYVKLILELGKNPDKN+LVLTL++ELGQREALKLNQQD+T IIKVCTRL K
Sbjct: 301 KGKRMLDPSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRK 360

Query: 361 SEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSV 420
            EIAE+L+ WYVESGHEPS+VMYTALVH+RYSD+KYREALSLVWEME+ANCPFDLPAY+V
Sbjct: 361 FEIAEKLYCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNV 420

Query: 421 VIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAG 480
           VIKLFVALGDLSRAVRYFAKLKEAGF+PTYDVYRN+ITIYLVSGRLAK KEIYKEAENAG
Sbjct: 421 VIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSGRLAKSKEIYKEAENAG 480

Query: 481 FIMDKQITSMLLQAKR 496
           FIMDKQITSMLLQAKR
Sbjct: 481 FIMDKQITSMLLQAKR 489

[Close]

BLAST of Cla97C01G011970 vs. TrEMBL
Match: tr|A0A0A0LVM0|A0A0A0LVM0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1)

HSP 1 Score: 851.3 bits (2198), Expect = 1.1e-243
Identity = 433/496 (87.30%), Postives = 461/496 (92.94%), Query Frame = 0


Query: 1   MDSVLLATSVSSILVKGNGELGCQTTMAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQF 60
           MDS++ ATSVSSILVKGNG +GCQ TM HF  NSRR PPKNLL PRRAKLPP+P  VNQF
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNP-AVNQF 60

Query: 61  LNNKISAPSPSFTDLTSSEISQLPEGEEDEHEEIYAYDY-KDTDVVWDSDEIEAISSLFQ 120
            NNK SAPSP FTDL SS+I Q      DEHEEI+A+DY KDTDVVWDSDEIEAISSLFQ
Sbjct: 61  FNNKTSAPSPPFTDLISSKIFQ------DEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQ 120

Query: 121 GRIPQKPGTLNRDRPLPLPLPHKLRPPRLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGL 180
           GRIPQKPG LNR+RPLPLPLPHKLRPPRLPN KIRP TVVSSRAL+SKQVYK PDFLIGL
Sbjct: 121 GRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGL 180

Query: 181 ARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFP 240
           AR IRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCWAQEQ RLFP
Sbjct: 181 AREIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFP 240

Query: 241 DDRVLATTVEVLARNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAK 300
           DDRVLA+TVEVL+RNHELKV +NLEEFT+LASRGVLEAM+RGFI+GGSLNLAWKLLVAAK
Sbjct: 241 DDRVLASTVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAK 300

Query: 301 KRKRMLDPSVYVKLILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGK 360
           K KRMLDPSVYVKLILELGKNPDKNMLVLTL++ELGQREALKLNQQD T I+KVCTRLGK
Sbjct: 301 KGKRMLDPSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGK 360

Query: 361 SEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSV 420
            EIAE+L+SWYVESGHEPS+VMYTALVH+RYSD+KYREALSLVWEME+ NCPFDLPAYSV
Sbjct: 361 FEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSV 420

Query: 421 VIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAG 480
           VIKLFVALGDLSRAVRYFAKLKEAGF+PTY+VYRN+ITIYLVSGRLAKCKEIYKEAENAG
Sbjct: 421 VIKLFVALGDLSRAVRYFAKLKEAGFSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAG 480

Query: 481 FIMDKQITSMLLQAKR 496
           F+MDKQITSMLLQAKR
Sbjct: 481 FMMDKQITSMLLQAKR 489

[Close]

BLAST of Cla97C01G011970 vs. TrEMBL
Match: tr|A0A2N9HFH8|A0A2N9HFH8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38191 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 3.1e-169
Identity = 314/469 (66.95%), Postives = 377/469 (80.38%), Query Frame = 0


Query: 31  NTNSRRHPPKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEGEEDE 90
           N++++R  PKNL YPR  KLPPD   VN FL  K +   PS TDL +S +++  EGEED 
Sbjct: 32  NSSTKRRLPKNLRYPRSTKLPPD-FGVNLFLKKKTT--DPSLTDLINSHLAE--EGEEDT 91

Query: 91  HEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPRLPN 150
            EE       DT +VWDSDEIEAISSLF+GRIPQKPG LNR RPL     +KLRP  LP 
Sbjct: 92  QEE-------DTGIVWDSDEIEAISSLFRGRIPQKPGKLNRQRPLXXXXXYKLRPAGLPA 151

Query: 151 LKIRPRTV----VSSRALMSKQVYKCPDFLIGLARAIRDLSPEENVSKVLNRWGPFLQKG 210
            K   ++V    +SSRA +SKQ+YK P  LIG+AR I+ LS EE+VS +LN+W  FL+KG
Sbjct: 152 PKKHVKSVSPSALSSRASLSKQLYKNPGVLIGIAREIKSLSSEEDVSVILNKWASFLRKG 211

Query: 211 SLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLARNHELKVPLNLEEF 270
           SLSLTI+ELGHMGLP+RALKTFCWAQ+QP+LFPDDR+LA+TVEVLARNHELKVP NLE+F
Sbjct: 212 SLSLTIRELGHMGLPERALKTFCWAQKQPQLFPDDRILASTVEVLARNHELKVPFNLEKF 271

Query: 271 TELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVKLILELGKNPDKNML 330
           T LASRGV+EAMVRGFI+GGSL+LA K+L+ AK  KRMLD SVY KLILELGKNPDK +L
Sbjct: 272 TALASRGVIEAMVRGFIRGGSLHLARKVLLIAKHGKRMLDSSVYAKLILELGKNPDKQLL 331

Query: 331 VLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALV 390
           V+ L+DELG+R+   L+QQD TAI+KVC RL K +I E L +W+ +SGH+PSVVMYT L+
Sbjct: 332 VVALLDELGERDDFNLSQQDCTAIMKVCIRLRKFDIVESLFNWFKQSGHDPSVVMYTTLI 391

Query: 391 HNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFA 450
           H+RYS+KKYREAL++VWEMEA+NC FDLPAY VVI+LFVAL DLSRAVRYF+KLKEAGF 
Sbjct: 392 HSRYSEKKYREALAVVWEMEASNCLFDLPAYRVVIRLFVALSDLSRAVRYFSKLKEAGFC 451

Query: 451 PTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR 496
           PTYD+YR+LI IY++SGRLAKCKE+ KEA  AGF +DK+ TS LLQ +R
Sbjct: 452 PTYDLYRDLIKIYMISGRLAKCKEVCKEAGQAGFKLDKETTSWLLQFER 488

[Close]

BLAST of Cla97C01G011970 vs. TrEMBL
Match: tr|A0A2P6QJA8|A0A2P6QJA8_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0066911 PE=4 SV=1)

HSP 1 Score: 563.9 bits (1452), Expect = 3.5e-157
Identity = 291/469 (62.05%), Postives = 364/469 (77.61%), Query Frame = 0


Query: 27  MAHFNTNSRRHPPKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEG 86
           M   ++  RR  PKNL YPR+AKLPPD + VNQFLN             TS++ S   E 
Sbjct: 26  MVRPSSTRRRSLPKNLRYPRQAKLPPD-LGVNQFLNK------------TSNDAS---EP 85

Query: 87  EEDEHEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPP 146
           E  E EE Y    +D D+VW+SDEIEAI SLFQGRIPQKPG+LNR RP      +K+RP 
Sbjct: 86  EFPEEEEKYT---EDGDIVWESDEIEAIQSLFQGRIPQKPGSLNRQRPXXXXXXYKVRPS 145

Query: 147 RLPNLKIRPRTVVSSRALMSKQVYKCPDFLIGLARAIRDLSPEENVSKVLNRWGPFLQKG 206
           RLP+    P+        MSKQVYK P+ L+GLAR IR L+ +++V  VLN+   FL+KG
Sbjct: 146 RLPS----PKKNAVKIGPMSKQVYKNPNALVGLAREIRSLAADKDVGIVLNKRVHFLRKG 205

Query: 207 SLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLARNHELKVPLNLEEF 266
           SLS+TI+ELGHMGLP+RAL+TFCWAQ+QP+L+PDDR+L++TVEVLARNHELK+P NL++F
Sbjct: 206 SLSMTIRELGHMGLPERALQTFCWAQKQPQLYPDDRILSSTVEVLARNHELKLPFNLDKF 265

Query: 267 TELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVKLILELGKNPDKNML 326
           T  ASRGV+EAMVRGFIKGGSL+LAWKL+  AK  +R LDPS+Y KLI+E GKNPDK+M+
Sbjct: 266 TSSASRGVIEAMVRGFIKGGSLHLAWKLVSVAKDNQRKLDPSLYAKLIVEFGKNPDKHMV 325

Query: 327 VLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALV 386
           V+TL++ELG+RE L L+QQD TAI+KVC RLGK E+ E ++ W+ +SGH+P+VV+YT L+
Sbjct: 326 VMTLLEELGEREDLSLSQQDCTAIMKVCIRLGKFEVVESVYDWFRQSGHDPTVVIYTTLI 385

Query: 387 HNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFA 446
           H+RYS+K+YREAL++VWEMEA+NC FD PAY VVIKLFVAL DL+RA RYF+KLKEAGF 
Sbjct: 386 HSRYSEKRYREALAVVWEMEASNCLFDFPAYRVVIKLFVALNDLARAARYFSKLKEAGFT 445

Query: 447 PTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR 496
           PTYDVYR+LI IY+VSGRLAKC+EI KE E  G  +D++  S LLQ +R
Sbjct: 446 PTYDVYRDLIRIYMVSGRLAKCREICKEVEMGGLKLDQETMSHLLQLER 471

[Close]

BLAST of Cla97C01G011970 vs. TrEMBL
Match: tr|A0A2I4GWH4|A0A2I4GWH4_9ROSI (pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Juglans regia OX=51240 GN=LOC109011476 PE=4 SV=1)

HSP 1 Score: 563.5 bits (1451), Expect = 4.6e-157
Identity = 294/472 (62.29%), Postives = 360/472 (76.27%), Query Frame = 0


Query: 32  TNSRRHPPKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEGEEDE- 91
           + +RR PPKNL YPR  K PP+   VN FL         + T+ T   ++ L +G++   
Sbjct: 31  SKTRRRPPKNLRYPRHPKSPPN-FGVNLFLKK-------TSTNSTDISLAYLIDGKKPRL 90

Query: 92  --------------HEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLP 151
                                  ++T + WDSDEIEAISSLFQGR+PQKPG LNR+RPL 
Sbjct: 91  AGKKGXXXXXXXXXXXXXXXXXRQETGICWDSDEIEAISSLFQGRVPQKPGKLNRERPLX 150

Query: 152 LPLPHKLRPPRLP----NLKIRPRTVVSSRALMSKQVYKCPDFLIGLARAIRDLSPEENV 211
               +KL P  LP    ++K     VVSSRA +SKQVYK P  LIG+AR I+ +S EE+V
Sbjct: 151 XXXXYKLXPLGLPTPKKHVKSASPLVVSSRASLSKQVYKNPGVLIGIAREIKMISSEEDV 210

Query: 212 SKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLA 271
           S VLN+W  FL+KGSLSLTI+ELGHMGLP+RAL+TFCWAQ+Q +LFPDDR+LA+TVEVLA
Sbjct: 211 SVVLNKWARFLRKGSLSLTIRELGHMGLPERALQTFCWAQKQTQLFPDDRILASTVEVLA 270

Query: 272 RNHELKVPLNLEEFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVK 331
           RNHELKVP  L +FT LASRGV+EAMVRGFI+GGSL+LAWKLL  A+  KRMLDPS+Y K
Sbjct: 271 RNHELKVPFKLGKFTSLASRGVMEAMVRGFIRGGSLHLAWKLLSVARDGKRMLDPSIYAK 330

Query: 332 LILELGKNPDKNMLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVE 391
           LILELGKNPDK+MLV++L+DELG+RE L L+QQD TAI+K+C RLGK ++ + L +W+ +
Sbjct: 331 LILELGKNPDKHMLVVSLLDELGEREDLNLSQQDCTAIMKICIRLGKFDVVDGLFNWFKQ 390

Query: 392 SGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSR 451
           SG+EPSVVMYT L+H+ YS++KYREAL+LVWEMEA+NC  DLPAY VVIKLFVAL D+SR
Sbjct: 391 SGYEPSVVMYTTLIHSHYSERKYREALALVWEMEASNCLLDLPAYRVVIKLFVALNDISR 450

Query: 452 AVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDK 485
           AVRYF+KLKEAGF+PTYD+YR LI IY+VSGRLAKCKE+ KEAE AGF +DK
Sbjct: 451 AVRYFSKLKEAGFSPTYDMYRELIKIYMVSGRLAKCKEVCKEAEIAGFKLDK 494

[Close]

BLAST of Cla97C01G011970 vs. Swiss-Prot
Match: sp|Q5XET4|PP142_ARATH (Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX=3702 GN=EMB975 PE=2 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 3.2e-121
Identity = 244/471 (51.80%), Postives = 316/471 (67.09%), Query Frame = 0


Query: 31  NTNSRRHP---PKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEGE 90
           N + R H     KNL  PRR KLPPD   VN FL        P    L            
Sbjct: 31  NASQRNHSKKLTKNLRNPRRTKLPPD-FGVNLFLR------KPKIEPLVI---------X 90

Query: 91  EDEHEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPR 150
                             W+ +EIEAISSLFQ RIPQKP   +R RPLPL          
Sbjct: 91  XXXXXXXXXXXXXXXXXXWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPL---XXXXXXX 150

Query: 151 LPNLKIRPRTVVSSRAL--MSKQVYKCPDFLIGLARAIRDL-SPEENVSKVLNRWGPFLQ 210
                     ++ S AL  +SKQVYK P FLIGLAR I+ L S + +VS VLN+W  FL+
Sbjct: 151 XXXXXXXXXNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVSFLR 210

Query: 211 KGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLARNHELKVPLNLE 270
           KGSLS TI+ELGHMGLP+RAL+T+ WA++   L PD+R+LA+T++VLA++HELK+   L+
Sbjct: 211 KGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL---LK 270

Query: 271 EFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVKLILELGKNPDKN 330
               LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ KNPDK 
Sbjct: 271 FDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNPDKY 330

Query: 331 MLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTA 390
            LV+ L++EL +RE LKL+QQD T+I+K+C +LG+ E+ E L  W+  S  EPSVVMYT 
Sbjct: 331 HLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVMYTT 390

Query: 391 LVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAG 450
           ++H+RYS++KYREA+S+VWEME +NC  DLPAY VVIKLFVAL DL RA+RY++KLKEAG
Sbjct: 391 MIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLKEAG 450

Query: 451 FAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR 496
           F+PTYD+YR++I++Y  SGRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 451 FSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

[Close]

BLAST of Cla97C01G011970 vs. Swiss-Prot
Match: sp|Q8GZ63|PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-10
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 348 TAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEA 407
           T ++ V    G+   A+ +     E+GH PS++ YT L+      K+Y    S+V E+E 
Sbjct: 49  TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108

Query: 408 ANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAK 467
           +    D   ++ VI  F   G++  AV+   K+KE G  PT   Y  LI  Y ++G+  +
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPER 168

Query: 468 CKEI 472
             E+
Sbjct: 169 SSEL 172

[Close]

BLAST of Cla97C01G011970 vs. TAIR10
Match: AT2G01860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 436.8 bits (1122), Expect = 1.8e-122
Identity = 244/471 (51.80%), Postives = 316/471 (67.09%), Query Frame = 0


Query: 31  NTNSRRHP---PKNLLYPRRAKLPPDPIVVNQFLNNKISAPSPSFTDLTSSEISQLPEGE 90
           N + R H     KNL  PRR KLPPD   VN FL        P    L            
Sbjct: 31  NASQRNHSKKLTKNLRNPRRTKLPPD-FGVNLFLR------KPKIEPLVI---------X 90

Query: 91  EDEHEEIYAYDYKDTDVVWDSDEIEAISSLFQGRIPQKPGTLNRDRPLPLPLPHKLRPPR 150
                             W+ +EIEAISSLFQ RIPQKP   +R RPLPL          
Sbjct: 91  XXXXXXXXXXXXXXXXXXWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPL---XXXXXXX 150

Query: 151 LPNLKIRPRTVVSSRAL--MSKQVYKCPDFLIGLARAIRDL-SPEENVSKVLNRWGPFLQ 210
                     ++ S AL  +SKQVYK P FLIGLAR I+ L S + +VS VLN+W  FL+
Sbjct: 151 XXXXXXXXXNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKWVSFLR 210

Query: 211 KGSLSLTIKELGHMGLPDRALKTFCWAQEQPRLFPDDRVLATTVEVLARNHELKVPLNLE 270
           KGSLS TI+ELGHMGLP+RAL+T+ WA++   L PD+R+LA+T++VLA++HELK+   L+
Sbjct: 211 KGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL---LK 270

Query: 271 EFTELASRGVLEAMVRGFIKGGSLNLAWKLLVAAKKRKRMLDPSVYVKLILELGKNPDKN 330
               LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ KNPDK 
Sbjct: 271 FDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAKNPDKY 330

Query: 331 MLVLTLMDELGQREALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTA 390
            LV+ L++EL +RE LKL+QQD T+I+K+C +LG+ E+ E L  W+  S  EPSVVMYT 
Sbjct: 331 HLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSVVMYTT 390

Query: 391 LVHNRYSDKKYREALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAG 450
           ++H+RYS++KYREA+S+VWEME +NC  DLPAY VVIKLFVAL DL RA+RY++KLKEAG
Sbjct: 391 MIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSKLKEAG 450

Query: 451 FAPTYDVYRNLITIYLVSGRLAKCKEIYKEAENAGFIMDKQITSMLLQAKR 496
           F+PTYD+YR++I++Y  SGRL KCKEI KE E+AG  +DK  +  LLQ ++
Sbjct: 451 FSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

[Close]

BLAST of Cla97C01G011970 vs. TAIR10
Match: AT5G25630.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-11
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 0


Query: 348 TAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYREALSLVWEMEA 407
           T ++ V    G+   A+ +     E+GH PS++ YT L+      K+Y    S+V E+E 
Sbjct: 49  TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108

Query: 408 ANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLITIYLVSGRLAK 467
           +    D   ++ VI  F   G++  AV+   K+KE G  PT   Y  LI  Y ++G+  +
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPER 168

Query: 468 CKEI 472
             E+
Sbjct: 169 SSEL 172

[Close]

BLAST of Cla97C01G011970 vs. TAIR10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 7.5e-04
Identity = 35/158 (22.15%), Postives = 67/158 (42.41%), Query Frame = 0


Query: 341 KLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVM----YTALVHNRYSDKKYR 400
           +L + D  +++K     G  E A  L  W V S +  ++ +        V     + +Y 
Sbjct: 133 ELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYS 192

Query: 401 EALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLI 460
            A  L+ ++       D+ AY+ ++  +   G   +A+  F ++KE G +PT   Y  ++
Sbjct: 193 VAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVIL 252

Query: 461 TIYLVSGR-LAKCKEIYKEAENAGFIMDKQITSMLLQA 494
            ++   GR   K   +  E  + G   D+   S +L A
Sbjct: 253 DVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSA 290

[Close]

BLAST of Cla97C01G011970 vs. TAIR10
Match: AT3G02330.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 42.4 bits (98), Expect = 9.8e-04
Identity = 30/147 (20.41%), Postives = 67/147 (45.58%), Query Frame = 0


Query: 337 REALKLNQQDTTAIIKVCTRLGKSEIAEELHSWYVESGHEPSVVMYTALVHNRYSDKKYR 396
           RE ++ + +    I+KVC+ L  + +  ++H   V  G +  VV  +AL+      K++ 
Sbjct: 173 REGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFV 232

Query: 397 EALSLVWEMEAANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFAPTYDVYRNLI 456
           E+L +   +   N      ++S +I   V    LS A+++F ++++     +  +Y +++
Sbjct: 233 ESLRVFQGIPEKNS----VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 292

Query: 457 TIYLVSGRLAKCKEIYKEAENAGFIMD 484
                   L    +++  A  + F  D
Sbjct: 293 RSCAALSELRLGGQLHAHALKSDFAAD 315

The following BLAST results are available for this feature:

BLAST of Cla97C01G011970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462173.1	7.5e-244	87.90	PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] ...	[more]
XP_004139567.1	1.7e-243	87.30	PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativu...	[more]
XP_022951807.1	2.0e-228	82.07	pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita mosc...	[more]
XP_023537574.1	2.9e-227	81.67	pentatricopeptide repeat-containing protein At2g01860 [Cucurbita pepo subsp. pep...	[more]
XP_023001961.1	8.3e-227	81.47	pentatricopeptide repeat-containing protein At2g01860 isoform X1 [Cucurbita maxi...	[more]

BLAST of Cla97C01G011970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CGD0\|A0A1S3CGD0_CUCME	4.9e-244	87.90	pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A0A0LVM0\|A0A0A0LVM0_CUCSA	1.1e-243	87.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1	[more]
tr\|A0A2N9HFH8\|A0A2N9HFH8_FAGSY	3.1e-169	66.95	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS38191 PE=4 SV=1	[more]
tr\|A0A2P6QJA8\|A0A2P6QJA8_ROSCH	3.5e-157	62.05	Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0066911 P...	[more]
tr\|A0A2I4GWH4\|A0A2I4GWH4_9ROSI	4.6e-157	62.29	pentatricopeptide repeat-containing protein At2g01860 isoform X2 OS=Juglans regi...	[more]

BLAST of Cla97C01G011970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q5XET4\|PP142_ARATH	3.2e-121	51.80	Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX...	[more]
sp\|Q8GZ63\|PP397_ARATH	3.0e-10	29.84	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cla97C01G011970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G01860.1	1.8e-122	51.80	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G25630.2	1.7e-11	29.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G18940.1	7.5e-04	22.15	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G02330.1	9.8e-04	20.41	Pentatricopeptide repeat (PPR) superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G011970.1	Cla97C01G011970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 416..448 e-value: 0.0027 score: 15.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 401..459 e-value: 5.1E-5 score: 23.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 343..377 score: 7.706
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 413..447 score: 9.887
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 271..305 score: 5.722
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 378..412 score: 7.224
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 448..482 score: 7.048
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 316..495 e-value: 1.1E-25 score: 92.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 177..303 e-value: 6.0E-6 score: 27.8
None	No IPR available	PANTHER	PTHR24015:SF642	SUBFAMILY NOT NAMED	coord: 22..494
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 22..494

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G011970	Csa1G144300	Cucumber (Chinese Long) v2	cuwmbB009
Cla97C01G011970	ClCG01G012950	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G011970	Lsi03G000760	Bottle gourd (USVL1VR-Ls)	lsiwmbB217

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G011970	Wax gourd	wgowmbB623
Cla97C01G011970	Watermelon (97103) v2	wmbwmbB028
Cla97C01G011970	Cucumber (Gy14) v2	cgybwmbB009
Cla97C01G011970	Cucumber (Gy14) v1	cgywmbB373
Cla97C01G011970	Wild cucumber (PI 183967)	cpiwmbB009
Cla97C01G011970	Cucumber (Chinese Long) v3	cucwmbB008
Cla97C01G011970	Melon (DHL92) v3.6.1	medwmbB132
Cla97C01G011970	Melon (DHL92) v3.5.1	mewmbB143