Cla97C01G011230 (gene) Watermelon (97103) v2

Overview
NameCla97C01G011230
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionglial fibrillary acidic protein-like
LocationCla97Chr01 : 18390889 .. 18392919 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGACACTCATGCGCCTAGGGTATTTGCCCATACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCGCAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATTTGCTTGGCCTAGAAGATTTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAGAATTTAGCCTTGGAGCATAGAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGCACTGCAAGCCTTGGTACACTTTTGGAACCCTATGTTGAAATGTTTCACATTCAGTATGTTTGACCTAACTCCCACTATAGATGAATATCGAGCTCTCATCGACATACTACCTTGCATAGGACGAAAGGTCTACGTCTATGATCGGAGGCGAACTCTACAAAGATCATTGTCCACGTTCTTGGGTAATATTCATGCATCTGATATAAAAAAGCAGATGAAGACAAAAGGAGGGAGAAGTTGTATCCCTATTGATTATTTAATCAGCCTTACGTGTGCATTTTTGCCTGGGAGAAAAGGTCTGTCTCTTTTGGCTTTATATATTTATGGTACAGTTATCTTTCCAAGAATTAAGGGGTATGCAGAAGAAGAAGTTATTAAACTTTTCGTTGGAATAGAGAGAGGTGTGAACCTCATTATCCCAATCATGGCGGAAACCTTTAGATCATTGAGCTATTGCCGAGTCCAAGGCAAGGGAAAGTTCTTCAGCTGCGCTCCAATGCTTTTTATATGGATTTCTAGCCATTTGAAGTATCCAAGCGAGTTTGGGTATCCACAAATAAAGTTTAGCAGTCCATGGAACAGCATGAGAAACACCATTAGAGATTTCAATTCGGCACACTGGAATCCAAACATTCTGAATCACGAAACTTGGATACATTTCTTAGGCCATCTAACATCAGATGAAATAATATGGAGGGCGTCGTGGGTACCCACAAACCCTTTGACATATTGCTGTGGGCAGTTACCATTCGTCCCGTTACTAGGTTTATGGGGAGGAATCGCTTATTCTCCCCTGTTAGTATTACGACAATTGTGGTCAAAGCAATTTACTCCATTTGTCCAAGGCTTAGAAGACTGGGATTTCTCGTACGAGTCTGATGAGAAAAGTGCCAAGGTATGTGAAGCAGTGGAAGCATGGAAATTTGTCAGAACTATGAAGAGCCTAAGACACTGCGAGGGTACTACAGAACAATATGATAATTGGAGAGCAGCTAGGGTAGGAATTGAAATCGCACAAGAGTCAACGAATCCGACCATGAAAATTTTTCGGAAGAATGAGAATCAAGAAAAAGATTTGGAGCGGTTAAAGCAGATGAATCAAGTCTTGGCAACAGAAAATGAAGAGTTGAGGGCAGAGGTCAGGAGATTGGTTCAACAAGCTACTAGCGCCCAAAGGCAGTTGGAGGAAGCAACACGTTGTCTCCAAAGACAACCAGAGTTGGAGAAGGAAAGTGACTCTTTGAACATTGAAGCGATCCAGATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCATCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAAGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

mRNA sequence

ATGGTAGACACTCATGCGCCTAGGGTATTTGCCCATACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCGCAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATTTGCTTGGCCTAGAAGATTTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAGAATTTAGCCTTGGAGCATAGAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGCACTGCAAGCCTTGAGCCTAAGACACTGCGAGGGTACTACAGAACAATATGATAATTGGAGAGCAGCTAGGGTAGGAATTGAAATCGCACAAGAGTCAACGAATCCGACCATGAAAATTTTTCGGAAGAATGAGAATCAAGAAAAAGATTTGGAGCGGTTAAAGCAGATGAATCAAGTCTTGGCAACAGAAAATGAAGAGTTGAGGGCAGAGGTCAGGAGATTGGTTCAACAAGCTACTAGCGCCCAAAGGCAGTTGGAGGAAGCAACACGTTGTCTCCAAAGACAACCAGAGTTGGAGAAGGAAAGTGACTCTTTGAACATTGAAGCGATCCAGATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCATCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAAGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

Coding sequence (CDS)

ATGGTAGACACTCATGCGCCTAGGGTATTTGCCCATACCATCCCTAGCGAAGACTCGTGGGAAGGTGTGTCGCAGTGGTCAGAGCAGCTTCAACAAGAGTCAAGATTTGCTTGGCCTAGAAGATTTGAGATTTCACTTCCACAATTTCCTCGATTAGAGTTTGTCGAAAATAATCTGGAAGATCTGAAGGAATTGTGGGAGAATTTAGCCTTGGAGCATAGAACTGAATTTGCAAGAGCATATGGGAACATCGCAGATCTGATGTATGCAAACATCAGCACACAAGCACTGCAAGCCTTGAGCCTAAGACACTGCGAGGGTACTACAGAACAATATGATAATTGGAGAGCAGCTAGGGTAGGAATTGAAATCGCACAAGAGTCAACGAATCCGACCATGAAAATTTTTCGGAAGAATGAGAATCAAGAAAAAGATTTGGAGCGGTTAAAGCAGATGAATCAAGTCTTGGCAACAGAAAATGAAGAGTTGAGGGCAGAGGTCAGGAGATTGGTTCAACAAGCTACTAGCGCCCAAAGGCAGTTGGAGGAAGCAACACGTTGTCTCCAAAGACAACCAGAGTTGGAGAAGGAAAGTGACTCTTTGAACATTGAAGCGATCCAGATGAAAAGGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCATCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAAGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGATGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

Protein sequence

MVDTHAPRVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRFEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARAYGNIADLMYANISTQALQALSLRHCEGTTEQYDNWRAARVGIEIAQESTNPTMKIFRKNENQEKDLERLKQMNQVLATENEELRAEVRRLVQQATSAQRQLEEATRCLQRQPELEKESDSLNIEAIQMKRKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSILEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD
Homology
[Close]
BLAST of Cla97C01G011230 vs. NCBI nr
Match: KGN65325.1 (hypothetical protein Csa_1G328370 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-25
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   MVDTHAPRVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRFEISLPQFPRLEFVENNLE 60
           M+ TH+P + A   PSEDSWEG++QW E+LQQE+   WP+  E+SLPQ  RLE V N++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  DLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL 101
            LK LWE+L  EHR EF +AY NI DL Y +I+  ALQAL
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQAL 100

[Close]
BLAST of Cla97C01G011230 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-05
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 0 

Query: 21  EGVSQWSEQLQQESRFAWPRRFEISLPQFPRLEFVENNLEDLKELWENLALEHRTEFARA 80
           E V QWSE +Q     A  +   + +P FP + F EN L+ LK LWE L  + +T+F + 
Sbjct: 17  EIVCQWSENMQHTHGDALSQ--NVIMP-FPNVTFPENQLDTLKRLWEGLRPDRKTQFIKK 76

Query: 81  YGNIADLMYANISTQALQAL 101
           YG+IA L+Y  ++   L+AL
Sbjct: 77  YGHIAQLLYVRVNFSVLRAL 93

[Close]
BLAST of Cla97C01G011230 vs. TrEMBL
Match: tr|A0A0A0LTS2|A0A0A0LTS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.1e-25
Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1   MVDTHAPRVFAHTIPSEDSWEGVSQWSEQLQQESRFAWPRRFEISLPQFPRLEFVENNLE 60
           M+ TH+P + A   PSEDSWEG++QW E+LQQE+   WP+  E+SLPQ  RLE V N++E
Sbjct: 1   MIGTHSPNLVAQNFPSEDSWEGMTQWLEKLQQETDTIWPKSIELSLPQTCRLEIVNNSME 60

Query: 61  DLKELWENLALEHRTEFARAYGNIADLMYANISTQALQAL 101
            LK LWE+L  EHR EF +AY NI DL Y +I+  ALQAL
Sbjct: 61  GLKSLWESLTKEHRIEFVKAYRNITDLKYTSINAHALQAL 100

The following BLAST results are available for this feature:
BLAST of Cla97C01G011230 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65325.14.7e-2557.00hypothetical protein Csa_1G328370 [Cucumis sativus][more]
XP_022147190.11.8e-0540.00uncharacterized protein LOC111016201 [Momordica charantia][more]
BLAST of Cla97C01G011230 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LTS2|A0A0A0LTS2_CUCSA3.1e-2557.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G328370 PE=4 SV=1[more]
BLAST of Cla97C01G011230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G011230 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G011230.1Cla97C01G011230.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 139..191
NoneNo IPR availableCOILSCoilCoilcoord: 205..253
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availableCOILSCoilCoilcoord: 310..337
NoneNo IPR availableCOILSCoilCoilcoord: 261..288

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G011230Cla011040Watermelon (97103) v1wmwmbB246
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G011230Wild cucumber (PI 183967)cpiwmbB438
Cla97C01G011230Cucumber (Chinese Long) v3cucwmbB008
Cla97C01G011230Cucumber (Chinese Long) v2cuwmbB009
Cla97C01G011230Bottle gourd (USVL1VR-Ls)lsiwmbB114
Cla97C01G011230Bottle gourd (USVL1VR-Ls)lsiwmbB153
Cla97C01G011230Melon (DHL92) v3.6.1medwmbB132
Cla97C01G011230Melon (DHL92) v3.5.1mewmbB136
Cla97C01G011230Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G011230Wax gourdwgowmbB508
Cla97C01G011230Silver-seed gourdcarwmbB0000
Cla97C01G011230Cucumber (Gy14) v2cgybwmbB009
Cla97C01G011230Cucumber (Gy14) v1cgywmbB557
Cla97C01G011230Cucumber (Gy14) v1cgywmbB558
Cla97C01G011230Cucurbita maxima (Rimu)cmawmbB208
Cla97C01G011230Cucurbita maxima (Rimu)cmawmbB394
Cla97C01G011230Cucurbita moschata (Rifu)cmowmbB192
Cla97C01G011230Cucurbita moschata (Rifu)cmowmbB811
Cla97C01G011230Wild cucumber (PI 183967)cpiwmbB009