Cla011040 (gene) Watermelon (97103) v1

NameCla011040
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr1 : 16555842 .. 16556324 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

mRNA sequence

ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

Coding sequence (CDS)

ATGAAAAAGAAGAATAAGAGATTGCTAAGAGATGTTGATGTTCTGCACAATGAGGCGGAAACACAAAAGGAGTACATCAAAGAGTTACAACAAGAGTTGGAGAGAATGAACAAAGTCGTTGCAAATTTTCAAAGCGCCTTAGAAGAGCAGGCCACATCATCCCAAAAGATTGTTGCAGAGGTTGAGAATCTACAGAATTCAGCCAAAGAATATAAATCCCAGCTTACTGAGGTAGAACATAGAAACATACTTCTCCAGGAAGTTGTTACAAGTTTTGAACACCAATTGTTGATGTGTCGCAATGCACGAGAGGTGGTGACAGACGACTATGCTCAGCTGAAGAAGGAATATCAGGAAATGTCAGCAGATTTTGCGGTATGGAGAGATGAGTATAGTATGTTGAGACGCGATTACGATAATGTCAGAGGGCAGGTAGAACAAGGAGCCGAGAAATTAAGGCAGATGGCAAAGATGGCAGATTAA

Protein sequence

MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD
BLAST of Cla011040 vs. Swiss-Prot
Match: MYO5B_RAT (Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.1e-06
Identity = 39/168 (23.21%), Postives = 77/168 (45.83%), Query Frame = 1

Query: 1    MKKKNKRLLRDVDVLHNEAETQKEYIKELQQ----ELERMNKVVANFQSALE-------- 60
            M+ K  +L R +D  + E +T  E +  +      E+E++ K +A +Q   E        
Sbjct: 925  MENKVVQLQRKIDDQNKEFKTLSEQLSAVTSTHAMEVEKLKKELARYQQNQEADPSLQLQ 984

Query: 61   ----------EQATSSQKIVAEVENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLM 120
                      ++A S ++++ +  N +N   E + ++ ++EH N LL++      HQ+L 
Sbjct: 985  EEVQSLRTELQKAHSERRVLEDAHNRENG--ELRKRVADLEHENALLKDEKEHLNHQILR 1044

Query: 121  CRNAR--EVVTDDYAQLKKEYQEMSADFAVWRDEYSMLRRDYDNVRGQ 145
               A   +   ++   +KKE +E  + +     EYS L + Y+N+R +
Sbjct: 1045 QSKAESSQSSVEENLLIKKELEEERSRYQNLVKEYSQLEQRYENLRDE 1090

BLAST of Cla011040 vs. TrEMBL
Match: A0A0A0LWU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.7e-17
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 1

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLRD+  +H+EAE QK  I+EL+QELER++KVV +FQSAL+EQATSSQ+I  +
Sbjct: 57  IRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTK 116

Query: 61  VENLQNSAKEYK 73
           +E L N AKEYK
Sbjct: 117 MEALDNLAKEYK 128

BLAST of Cla011040 vs. NCBI nr
Match: gi|659128749|ref|XP_008464352.1| (PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 1.0e-36
Identity = 86/160 (53.75%), Postives = 109/160 (68.12%), Query Frame = 1

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLR++  LH E E +KE                  FQ+AL EQA SSQ+    
Sbjct: 80  VRKKNKRLLRNIANLHEEIEAEKE------------------FQNALHEQAISSQQTAMG 139

Query: 61  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
           +E LQ+S +EYKSQL E E +N  LQ+ V S E QLL+CR AREV+TDDYAQL ++YQEM
Sbjct: 140 IEVLQHSIEEYKSQLIEAESKNNFLQKAVNSSESQLLICRKAREVITDDYAQLMEKYQEM 199

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD 161
           S DF +W+DEY  LRR YD+   ++E+GAEKLRQMA +AD
Sbjct: 200 SIDFMMWKDEYETLRRKYDDAIRRMERGAEKLRQMASVAD 221

BLAST of Cla011040 vs. NCBI nr
Match: gi|700210231|gb|KGN65327.1| (hypothetical protein Csa_1G328390 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 6.8e-17
Identity = 47/72 (65.28%), Postives = 61/72 (84.72%), Query Frame = 1

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           ++KKNKRLLRD+  +H+EAE QK  I+EL+QELER++KVV +FQSAL+EQATSSQ+I  +
Sbjct: 57  IRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVSKVVIDFQSALDEQATSSQRITTK 116

Query: 61  VENLQNSAKEYK 73
           +E L N AKEYK
Sbjct: 117 MEALDNLAKEYK 128

BLAST of Cla011040 vs. NCBI nr
Match: gi|659131250|ref|XP_008465588.1| (PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo])

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-07
Identity = 39/160 (24.38%), Postives = 77/160 (48.12%), Query Frame = 1

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M K N+ L  +   L     ++ EYIK+L+   E   ++V +  +++ ++ T    + A+
Sbjct: 179 MNKANRSLKNEKTTLQATVGSEDEYIKDLENGKEYFLELVNDLNTSIGKRETQIMDLEAQ 238

Query: 61  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
             +L+ +      ++ E      +L+  V S  +QL   +N+ + +T +Y  L  +Y +M
Sbjct: 239 NHSLRQTVDNLHLKMAERSEEYEILKNYVDSLHYQLTALQNSSKRITQEYESLNTDYVQM 298

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLRQMAKMAD 161
             D       Y +  RD+  +  +V+Q  E LR M+K A+
Sbjct: 299 KVD-------YDLQTRDFQVLVERVDQTIEFLRMMSKRAN 331

BLAST of Cla011040 vs. NCBI nr
Match: gi|659134033|ref|XP_008467001.1| (PREDICTED: tropomyosin-1-like, partial [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-06
Identity = 37/153 (24.18%), Postives = 70/153 (45.75%), Query Frame = 1

Query: 1   MKKKNKRLLRDVDVLHNEAETQKEYIKELQQELERMNKVVANFQSALEEQATSSQKIVAE 60
           M K N+ L  +         +Q EYIK+L+   E   K+V +  +++ ++ T    + A+
Sbjct: 95  MNKANRSLKNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 154

Query: 61  VENLQNSAKEYKSQLTEVEHRNILLQEVVTSFEHQLLMCRNAREVVTDDYAQLKKEYQEM 120
             +L+ +      ++ E      +L+    S  +QL   +N+ + +T +Y  L  +Y +M
Sbjct: 155 NHSLRQTVDSLHLKMVEHSEEYEILKNYADSLHYQLTALQNSSKRITQEYESLNTDYVQM 214

Query: 121 SADFAVWRDEYSMLRRDYDNVRGQVEQGAEKLR 154
             D       Y M  RD+  +  +V+Q  E LR
Sbjct: 215 KVD-------YDMQTRDFQVLVERVDQTIEFLR 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MYO5B_RAT7.1e-0623.21Unconventional myosin-Vb OS=Rattus norvegicus GN=Myo5b PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LWU7_CUCSA4.7e-1765.28Uncharacterized protein OS=Cucumis sativus GN=Csa_1G328390 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659128749|ref|XP_008464352.1|1.0e-3653.75PREDICTED: putative golgin subfamily A member 6-like protein 3, partial [Cucumis... [more]
gi|700210231|gb|KGN65327.1|6.8e-1765.28hypothetical protein Csa_1G328390 [Cucumis sativus][more]
gi|659131250|ref|XP_008465588.1|3.7e-0724.38PREDICTED: polyamine-modulated factor 1-binding protein 1-like [Cucumis melo][more]
gi|659134033|ref|XP_008467001.1|9.2e-0624.18PREDICTED: tropomyosin-1-like, partial [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013805GrpE_coiled_coil
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011040Cla011040.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3DG3DSA:3.90.20.20coord: 107..157
score: 2.
NoneNo IPR availableunknownCoilCoilcoord: 12..46
score: -coord: 54..81
score: -coord: 103..130
scor
NoneNo IPR availableGENE3DG3DSA:1.10.287.950coord: 7..70
score: 8.
NoneNo IPR availableunknownSSF58100Bacterial hemolysinscoord: 2..146
score: 4.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla011040Cla97C01G011230Watermelon (97103) v2wmwmbB246
The following gene(s) are paralogous to this gene:

None