Cla97C01G009700 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G009700
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cla97Chr01 : 12555252 .. 12557372 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTCTTGGCGTCTCTCCGAATTCTAAGGCCCCATGGATTTTTCCAGAAATTATGCTCCTTTCAACAGCGATCTTCAGCTTCTGCCTCCGTGCCATTTTTCTCCTCAACTCATGGTCATCCCATCTCTTCGCCGCACCATGATTCTTCTTCTTCTTCTTCTTCGTTGCAGTCTCCTGTGCAAACGATTTGTTCAATTGTCCTCCAGACTTATTTTCGTCAACCCCATCTGAGATTCTCTCCTTCTAAGCTGAATCTTGATATGGATGTTGACTCCTTGACTCATGAACAAGCCATTTCTGTCGTTGCTTCGCTTGCTAGCGAGGAGGGTTCAATGGTGGCGCTTAGTTTCTTTTACTGGGCAATTGGGTTCCCCAAATTCCGCCATTTCATGCGGCTTTACATAGTTTGTACGATGTCATTGATTGGGAAATGTAATCTAGAGCGAGCCCATGAAGTGGTGGAGTGTATGATAGGGGTTTTTGCAGAAATTGGGAAGTTGAAGGAGGCGGTGGATATGATCTATGACATGAGAAATCAGGGACTTGTGTTGACCACCAGGGTAATGAATCGTACTATAATGGTGGCTTCTGAAATGGGGCTGGTTGAATATGCAGACAATGTGTTCGACGAAATGTCTGCAAGAGGTGTGTCTCCTGATTCTTGCACTTATAAGTCTATAATTGTTGGTTACTGTAGAAATGGTAATGTTTTGGAAGCAGATAGGTGGATATGTGAGATGATGGAGAGAGGCTTTGTGGTTGATAATGCCACATTGACTTTGATTATTAAAGCTTTTTGTGAAAAGAGTTTTGTAAACAGGGCACTGTGGTTTTTTCATAAGGTTACAAAGATGGGTTTATCACCAAATTTGATTAACTATTCATCTATGATTAGTGGATTGTGCATGAGGGGTAGTGTTAGGCAAGCATTTGAATTATTGGAAGAGATGGTTAGAAATGGCTGGAAACCCAATGTGTATATCCACACATCATTAATTCATGGGCTTTGCAAGAAGGGGTGGACAGAAAGAGCTTTTAGACTGTTTCTTAAACTTGTGAGAAGTGACAATTACAAGCCAAATGTGCACACTTACACAGCCATGATAAGTGGGTACTGCAAAGAGGAGAAGTTGAATAGAGCTGAAATGTTGTTTGAAAGAATGAAAGAACAGGGAATGGTTCCAAACACCAACACTTATACAACTCTTATTGATGGGCACTGTAAGGCTGGGAATTTCAGTAAAGCCTATGAATTGATGGAGTTAATGTGTAATGAAGGTTTCTTCCCTAATATATGTACATACAATGCAGTTGTTGATGGTCTCTGCAAAAGAGGGAGAGTTGAAGAGGCTTTCACACTGCTAAATAAAGGGTTTCGGAATCAAATTGAAGCTGACAGTGTCACATACACCATTCTGATATCTGAGCAGTGTAAGCGAGCTGATATGAACCGAGCCCTTATGTTTCTAAATAAGATGTTTAAAGTTGGCTTCCAGCTTGATATCCATTTATATACCACTTTGATTGCTGCCTTCTGCAGGCACAAACTGATGAAGGATAGCGAAAAGCTGTTCGACGAAGTTGTTAAGCTTGGTTTGGTTCCAACAAAAGAAACTTACACATCCATGATATGTGGCTATTGTAGGGAGAGAAAAATTAGCTCAGCAGTCGAGTTTTTCCAGAAGATGAGTGACCATGGTTGTTCACCAGATAGCATTAGTTATGGTGCTTTAATTAGTGGCCTTTGTAAAGAGTTGAGGCTGGATGAGGCTCGCCAATTATATGATACCATGATAGACAAAGGGCTTTCTCCTTGTGAAGTTACTCGGGTGACATTGACTTATGAGTATTGCAAAACCGAAGACTTTGCTTCAGCCATGGTTATCTTGGAACGGCTCAACAAGAAGCTTTGGATACGCACGGTTCATACATTAATAAGGAAGCTTTGTTGCGAGAAGAAAGTTGCCATGGCAGCTCTGTTCTTTCATAAGTTACTGGATAAGGAGGTCAATGTAGATCGTGTGGCTTTGGCTGCATTCATCACTGCCTGTTCTGAGAGCAATAAGTATGCTCTTGTTTCCGACTTATCTGAAAGGATTTCGAGAGGTATCAGCTAA

mRNA sequence

ATGCAATTCTTGGCGTCTCTCCGAATTCTAAGGCCCCATGGATTTTTCCAGAAATTATGCTCCTTTCAACAGCGATCTTCAGCTTCTGCCTCCGTGCCATTTTTCTCCTCAACTCATGGTCATCCCATCTCTTCGCCGCACCATGATTCTTCTTCTTCTTCTTCTTCGTTGCAGTCTCCTGTGCAAACGATTTGTTCAATTGTCCTCCAGACTTATTTTCGTCAACCCCATCTGAGATTCTCTCCTTCTAAGCTGAATCTTGATATGGATGTTGACTCCTTGACTCATGAACAAGCCATTTCTGTCGTTGCTTCGCTTGCTAGCGAGGAGGGTTCAATGGTGGCGCTTAGTTTCTTTTACTGGGCAATTGGGTTCCCCAAATTCCGCCATTTCATGCGGCTTTACATAGTTTGTACGATGTCATTGATTGGGAAATGTAATCTAGAGCGAGCCCATGAAGTGGTGGAGTGTATGATAGGGGTTTTTGCAGAAATTGGGAAGTTGAAGGAGGCGGTGGATATGATCTATGACATGAGAAATCAGGGACTTGTGTTGACCACCAGGGTAATGAATCGTACTATAATGGTGGCTTCTGAAATGGGGCTGGTTGAATATGCAGACAATGTGTTCGACGAAATGTCTGCAAGAGGTGTGTCTCCTGATTCTTGCACTTATAAGTCTATAATTGTTGGTTACTGTAGAAATGGTAATGTTTTGGAAGCAGATAGGTGGATATGTGAGATGATGGAGAGAGGCTTTGTGGTTGATAATGCCACATTGACTTTGATTATTAAAGCTTTTTGTGAAAAGAGTTTTGTAAACAGGGCACTGTGGTTTTTTCATAAGGTTACAAAGATGGGTTTATCACCAAATTTGATTAACTATTCATCTATGATTAGTGGATTGTGCATGAGGGGTAGTGTTAGGCAAGCATTTGAATTATTGGAAGAGATGGTTAGAAATGGCTGGAAACCCAATGTGTATATCCACACATCATTAATTCATGGGCTTTGCAAGAAGGGGTGGACAGAAAGAGCTTTTAGACTGTTTCTTAAACTTGTGAGAAGTGACAATTACAAGCCAAATGTGCACACTTACACAGCCATGATAAGTGGGTACTGCAAAGAGGAGAAGTTGAATAGAGCTGAAATGTTGTTTGAAAGAATGAAAGAACAGGGAATGGTTCCAAACACCAACACTTATACAACTCTTATTGATGGGCACTGTAAGGCTGGGAATTTCAGTAAAGCCTATGAATTGATGGAGTTAATGTGTAATGAAGGTTTCTTCCCTAATATATGTACATACAATGCAGTTGTTGATGGTCTCTGCAAAAGAGGGAGAGTTGAAGAGGCTTTCACACTGCTAAATAAAGGGTTTCGGAATCAAATTGAAGCTGACAGTGTCACATACACCATTCTGATATCTGAGCAGTGTAAGCGAGCTGATATGAACCGAGCCCTTATGTTTCTAAATAAGATGTTTAAAGTTGGCTTCCAGCTTGATATCCATTTATATACCACTTTGATTGCTGCCTTCTGCAGGCACAAACTGATGAAGGATAGCGAAAAGCTGTTCGACGAAGTTGTTAAGCTTGGTTTGGTTCCAACAAAAGAAACTTACACATCCATGATATGTGGCTATTGTAGGGAGAGAAAAATTAGCTCAGCAGTCGAGTTTTTCCAGAAGATGAGTGACCATGGTTGTTCACCAGATAGCATTAGTTATGGTGCTTTAATTAGTGGCCTTTGTAAAGAGTTGAGGCTGGATGAGGCTCGCCAATTATATGATACCATGATAGACAAAGGGCTTTCTCCTTGTGAAGTTACTCGGGTGACATTGACTTATGAGTATTGCAAAACCGAAGACTTTGCTTCAGCCATGGTTATCTTGGAACGGCTCAACAAGAAGCTTTGGATACGCACGGTTCATACATTAATAAGGAAGCTTTGTTGCGAGAAGAAAGTTGCCATGGCAGCTCTGTTCTTTCATAAGTTACTGGATAAGGAGGTCAATGTAGATCGTGTGGCTTTGGCTGCATTCATCACTGCCTGTTCTGAGAGCAATAAGTATGCTCTTGTTTCCGACTTATCTGAAAGGATTTCGAGAGGTATCAGCTAA

Coding sequence (CDS)

ATGCAATTCTTGGCGTCTCTCCGAATTCTAAGGCCCCATGGATTTTTCCAGAAATTATGCTCCTTTCAACAGCGATCTTCAGCTTCTGCCTCCGTGCCATTTTTCTCCTCAACTCATGGTCATCCCATCTCTTCGCCGCACCATGATTCTTCTTCTTCTTCTTCTTCGTTGCAGTCTCCTGTGCAAACGATTTGTTCAATTGTCCTCCAGACTTATTTTCGTCAACCCCATCTGAGATTCTCTCCTTCTAAGCTGAATCTTGATATGGATGTTGACTCCTTGACTCATGAACAAGCCATTTCTGTCGTTGCTTCGCTTGCTAGCGAGGAGGGTTCAATGGTGGCGCTTAGTTTCTTTTACTGGGCAATTGGGTTCCCCAAATTCCGCCATTTCATGCGGCTTTACATAGTTTGTACGATGTCATTGATTGGGAAATGTAATCTAGAGCGAGCCCATGAAGTGGTGGAGTGTATGATAGGGGTTTTTGCAGAAATTGGGAAGTTGAAGGAGGCGGTGGATATGATCTATGACATGAGAAATCAGGGACTTGTGTTGACCACCAGGGTAATGAATCGTACTATAATGGTGGCTTCTGAAATGGGGCTGGTTGAATATGCAGACAATGTGTTCGACGAAATGTCTGCAAGAGGTGTGTCTCCTGATTCTTGCACTTATAAGTCTATAATTGTTGGTTACTGTAGAAATGGTAATGTTTTGGAAGCAGATAGGTGGATATGTGAGATGATGGAGAGAGGCTTTGTGGTTGATAATGCCACATTGACTTTGATTATTAAAGCTTTTTGTGAAAAGAGTTTTGTAAACAGGGCACTGTGGTTTTTTCATAAGGTTACAAAGATGGGTTTATCACCAAATTTGATTAACTATTCATCTATGATTAGTGGATTGTGCATGAGGGGTAGTGTTAGGCAAGCATTTGAATTATTGGAAGAGATGGTTAGAAATGGCTGGAAACCCAATGTGTATATCCACACATCATTAATTCATGGGCTTTGCAAGAAGGGGTGGACAGAAAGAGCTTTTAGACTGTTTCTTAAACTTGTGAGAAGTGACAATTACAAGCCAAATGTGCACACTTACACAGCCATGATAAGTGGGTACTGCAAAGAGGAGAAGTTGAATAGAGCTGAAATGTTGTTTGAAAGAATGAAAGAACAGGGAATGGTTCCAAACACCAACACTTATACAACTCTTATTGATGGGCACTGTAAGGCTGGGAATTTCAGTAAAGCCTATGAATTGATGGAGTTAATGTGTAATGAAGGTTTCTTCCCTAATATATGTACATACAATGCAGTTGTTGATGGTCTCTGCAAAAGAGGGAGAGTTGAAGAGGCTTTCACACTGCTAAATAAAGGGTTTCGGAATCAAATTGAAGCTGACAGTGTCACATACACCATTCTGATATCTGAGCAGTGTAAGCGAGCTGATATGAACCGAGCCCTTATGTTTCTAAATAAGATGTTTAAAGTTGGCTTCCAGCTTGATATCCATTTATATACCACTTTGATTGCTGCCTTCTGCAGGCACAAACTGATGAAGGATAGCGAAAAGCTGTTCGACGAAGTTGTTAAGCTTGGTTTGGTTCCAACAAAAGAAACTTACACATCCATGATATGTGGCTATTGTAGGGAGAGAAAAATTAGCTCAGCAGTCGAGTTTTTCCAGAAGATGAGTGACCATGGTTGTTCACCAGATAGCATTAGTTATGGTGCTTTAATTAGTGGCCTTTGTAAAGAGTTGAGGCTGGATGAGGCTCGCCAATTATATGATACCATGATAGACAAAGGGCTTTCTCCTTGTGAAGTTACTCGGGTGACATTGACTTATGAGTATTGCAAAACCGAAGACTTTGCTTCAGCCATGGTTATCTTGGAACGGCTCAACAAGAAGCTTTGGATACGCACGGTTCATACATTAATAAGGAAGCTTTGTTGCGAGAAGAAAGTTGCCATGGCAGCTCTGTTCTTTCATAAGTTACTGGATAAGGAGGTCAATGTAGATCGTGTGGCTTTGGCTGCATTCATCACTGCCTGTTCTGAGAGCAATAAGTATGCTCTTGTTTCCGACTTATCTGAAAGGATTTCGAGAGGTATCAGCTAA

Protein sequence

MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHHDSSSSSSSLQSPVQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFYWAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRNQGLVLTTRVMNRTIMVASEMGLVEYADNVFDEMSARGVSPDSCTYKSIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIIKAFCEKSFVNRALWFFHKVTKMGLSPNLINYSSMISGLCMRGSVRQAFELLEEMVRNGWKPNVYIHTSLIHGLCKKGWTERAFRLFLKLVRSDNYKPNVHTYTAMISGYCKEEKLNRAEMLFERMKEQGMVPNTNTYTTLIDGHCKAGNFSKAYELMELMCNEGFFPNICTYNAVVDGLCKRGRVEEAFTLLNKGFRNQIEADSVTYTILISEQCKRADMNRALMFLNKMFKVGFQLDIHLYTTLIAAFCRHKLMKDSEKLFDEVVKLGLVPTKETYTSMICGYCRERKISSAVEFFQKMSDHGCSPDSISYGALISGLCKELRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERLNKKLWIRTVHTLIRKLCCEKKVAMAALFFHKLLDKEVNVDRVALAAFITACSESNKYALVSDLSERISRGIS

Homology

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BLAST of Cla97C01G009700 vs. NCBI nr
Match: KGN66873.1 (hypothetical protein Csa_1G701980 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.0e-81
Identity = 161/192 (83.85%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLASLRILRPHGF QKLCSFQQ SSASAS+ FFSSTH   ISSPH         LQSP
Sbjct: 24  MQFLASLRILRPHGFLQKLCSFQQGSSASASLAFFSSTHFDSISSPH-HDFSSSSSLQSP 83

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           ++ ICS+VL TY RQPHLRFSPSKLNLDMD  SLTHEQAIS VA LASEEGSMVALSFFY
Sbjct: 84  LKKICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFY 143

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WA+GFPKFR+FMRLYIVCTMSL+GKCNLERAHEVVECM+GVFAEIGKLKEAVDMI DMRN
Sbjct: 144 WAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRN 203

Query: 181 QGLVLTTRVMNR 193
           QGLVLTTRVMNR
Sbjct: 204 QGLVLTTRVMNR 214

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BLAST of Cla97C01G009700 vs. NCBI nr
Match: XP_004145475.2 (PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 3.0e-81
Identity = 161/192 (83.85%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLASLRILRPHGF QKLCSFQQ SSASAS+ FFSSTH   ISSPH         LQSP
Sbjct: 1   MQFLASLRILRPHGFLQKLCSFQQGSSASASLAFFSSTHFDSISSPH-HDFSSSSSLQSP 60

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           ++ ICS+VL TY RQPHLRFSPSKLNLDMD  SLTHEQAIS VA LASEEGSMVALSFFY
Sbjct: 61  LKKICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFY 120

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WA+GFPKFR+FMRLYIVCTMSL+GKCNLERAHEVVECM+GVFAEIGKLKEAVDMI DMRN
Sbjct: 121 WAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRN 180

Query: 181 QGLVLTTRVMNR 193
           QGLVLTTRVMNR
Sbjct: 181 QGLVLTTRVMNR 191

[Close]

BLAST of Cla97C01G009700 vs. NCBI nr
Match: XP_008459042.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Cucumis melo])

HSP 1 Score: 307.8 bits (787), Expect = 9.8e-80
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLAS RILR HGF QKLCS Q  SS SAS+ FFSSTH   ISSPH         LQSP
Sbjct: 1   MQFLASHRILRTHGFLQKLCSLQHGSSVSASIAFFSSTHFDSISSPH--HDFSSSSLQSP 60

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           VQ  CS+VL+ Y RQPHLRFSPSKLNLDMD DSLTHEQAIS VASLASEEGSMVALSFFY
Sbjct: 61  VQKTCSLVLEAYLRQPHLRFSPSKLNLDMDADSLTHEQAISAVASLASEEGSMVALSFFY 120

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WAIGFPKFR+FMRLYIVCTMSLIGKCNLERAHEVVECM+GVFAEIGKLKEAVDMI DMRN
Sbjct: 121 WAIGFPKFRYFMRLYIVCTMSLIGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRN 180

Query: 181 QGLVLTTRVMNR 193
           QGLVLTTRVMNR
Sbjct: 181 QGLVLTTRVMNR 190

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BLAST of Cla97C01G009700 vs. NCBI nr
Match: XP_023541359.1 (pentatricopeptide repeat-containing protein At4g19890 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 6.4e-71
Identity = 151/190 (79.47%), Postives = 159/190 (83.68%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPH--XXXXXXXXXLQ 60
           MQFLASLRILR HGF  K  SF QR S SAS   FSS+H   ISSPH    XX     LQ
Sbjct: 4   MQFLASLRILRLHGFLHKF-SFPQRLSVSASAGLFSSSHFDSISSPHRDSSXXSSCSSLQ 63

Query: 61  SPVQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSF 120
           SPVQTICS+V+++YFRQPHLRFSP KLNLDMD D LTHEQAISVVASLASEEGSM+ALSF
Sbjct: 64  SPVQTICSLVIESYFRQPHLRFSPLKLNLDMDADFLTHEQAISVVASLASEEGSMMALSF 123

Query: 121 FYWAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDM 180
           FYWAIGFPKFR+FMRLYIVCTM L+GKC  ERA EVVECMIGVFAEIGKLKEAVDMI DM
Sbjct: 124 FYWAIGFPKFRYFMRLYIVCTMLLVGKCKQERADEVVECMIGVFAEIGKLKEAVDMIIDM 183

Query: 181 RNQGLVLTTR 189
           RNQGLVLTTR
Sbjct: 184 RNQGLVLTTR 192

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BLAST of Cla97C01G009700 vs. NCBI nr
Match: XP_022994748.1 (pentatricopeptide repeat-containing protein At4g19890 [Cucurbita maxima])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-69
Identity = 147/188 (78.19%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLASLRILR HGF  K  SF QR S SAS  FFSS+H   ISSPH         LQSP
Sbjct: 4   MQFLASLRILRLHGFLHKF-SFPQRLSVSASAGFFSSSHFDSISSPH--RDSSSSSLQSP 63

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           VQTICS+V+++YFRQPHLRFSP KLNLD+D D LTHEQAISVVASLASEEGSM+ALSFFY
Sbjct: 64  VQTICSLVIESYFRQPHLRFSPFKLNLDVDADFLTHEQAISVVASLASEEGSMMALSFFY 123

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WAI FPKFR+FMRLYIVCTM L+ KC  ERA EVVECMIGVFAEIGKLKEAVDMI DMRN
Sbjct: 124 WAIRFPKFRYFMRLYIVCTMLLVEKCKQERADEVVECMIGVFAEIGKLKEAVDMIIDMRN 183

Query: 181 QGLVLTTR 189
           QGLVLTTR
Sbjct: 184 QGLVLTTR 188

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BLAST of Cla97C01G009700 vs. TrEMBL
Match: tr|A0A0A0LYL9|A0A0A0LYL9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701980 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.0e-81
Identity = 161/192 (83.85%), Postives = 169/192 (88.02%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLASLRILRPHGF QKLCSFQQ SSASAS+ FFSSTH   ISSPH         LQSP
Sbjct: 24  MQFLASLRILRPHGFLQKLCSFQQGSSASASLAFFSSTHFDSISSPH-HDFSSSSSLQSP 83

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           ++ ICS+VL TY RQPHLRFSPSKLNLDMD  SLTHEQAIS VA LASEEGSMVALSFFY
Sbjct: 84  LKKICSLVLDTYLRQPHLRFSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFY 143

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WA+GFPKFR+FMRLYIVCTMSL+GKCNLERAHEVVECM+GVFAEIGKLKEAVDMI DMRN
Sbjct: 144 WAVGFPKFRYFMRLYIVCTMSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRN 203

Query: 181 QGLVLTTRVMNR 193
           QGLVLTTRVMNR
Sbjct: 204 QGLVLTTRVMNR 214

[Close]

BLAST of Cla97C01G009700 vs. TrEMBL
Match: tr|A0A1S3CAH0|A0A1S3CAH0_CUCME (pentatricopeptide repeat-containing protein At4g19890 OS=Cucumis melo OX=3656 GN=LOC103498266 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 6.5e-80
Identity = 160/192 (83.33%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 1   MQFLASLRILRPHGFFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSP 60
           MQFLAS RILR HGF QKLCS Q  SS SAS+ FFSSTH   ISSPH         LQSP
Sbjct: 1   MQFLASHRILRTHGFLQKLCSLQHGSSVSASIAFFSSTHFDSISSPH--HDFSSSSLQSP 60

Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           VQ  CS+VL+ Y RQPHLRFSPSKLNLDMD DSLTHEQAIS VASLASEEGSMVALSFFY
Sbjct: 61  VQKTCSLVLEAYLRQPHLRFSPSKLNLDMDADSLTHEQAISAVASLASEEGSMVALSFFY 120

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WAIGFPKFR+FMRLYIVCTMSLIGKCNLERAHEVVECM+GVFAEIGKLKEAVDMI DMRN
Sbjct: 121 WAIGFPKFRYFMRLYIVCTMSLIGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRN 180

Query: 181 QGLVLTTRVMNR 193
           QGLVLTTRVMNR
Sbjct: 181 QGLVLTTRVMNR 190

[Close]

BLAST of Cla97C01G009700 vs. TrEMBL
Match: tr|A0A2P5B7A6|A0A2P5B7A6_PARAD (Tetratricopeptide-like helical domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_264650 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.6e-46
Identity = 104/145 (71.72%), Postives = 122/145 (84.14%), Query Frame = 0


Query: 43  ISSPHXXXXXXXXXLQSPVQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISV 102
           ++SP    XXXXXX QS V+TICS+V ++Y++  H R SP KLNL +D DSLTHEQA ++
Sbjct: 51  LTSPISSSXXXXXXXQSLVRTICSLVFESYYQHGHGRQSPPKLNLKLDTDSLTHEQATTI 110

Query: 103 VASLASEEGSMVALSFFYWAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVF 162
           VASLA E GSMVALSFFYWAIGFPKFRHFMRLYIVC MSLIG  NLERAHEV++CM+G F
Sbjct: 111 VASLADEGGSMVALSFFYWAIGFPKFRHFMRLYIVCAMSLIGNGNLERAHEVMQCMLGSF 170

Query: 163 AEIGKLKEAVDMIYDMRNQGLVLTT 188
           AEIG+LKEA DMI +M+NQGL+LTT
Sbjct: 171 AEIGRLKEAGDMILEMQNQGLMLTT 195

[Close]

BLAST of Cla97C01G009700 vs. TrEMBL
Match: tr|M5WK57|M5WK57_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015022mg PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.1e-46
Identity = 95/131 (72.52%), Postives = 112/131 (85.50%), Query Frame = 0


Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           V+TIC++V Q+Y  Q HLR SP KLNLD++ DSLT+EQAISVVASLA E GSMVALSFFY
Sbjct: 70  VRTICALVCQSYSPQTHLRSSPPKLNLDLNADSLTNEQAISVVASLAEEAGSMVALSFFY 129

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WAIGFPKFR+FMRLYI C MSL G  NLERAHEVV CM+  FAEIG+LKEA DM+++M+N
Sbjct: 130 WAIGFPKFRYFMRLYIFCAMSLFGNGNLERAHEVVHCMVRNFAEIGRLKEAADMVFEMQN 189

Query: 181 QGLVLTTRVMN 192
           QGL+L+TR +N
Sbjct: 190 QGLMLSTRTLN 200

[Close]

BLAST of Cla97C01G009700 vs. TrEMBL
Match: tr|A0A251PIY1|A0A251PIY1_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G111800 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.2e-45
Identity = 94/128 (73.44%), Postives = 110/128 (85.94%), Query Frame = 0


Query: 61  VQTICSIVLQTYFRQPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFY 120
           V+TIC++V Q+Y  Q HLR SP KLNLD++ DSLT+EQAISVVASLA E GSMVALSFFY
Sbjct: 70  VRTICALVCQSYSPQTHLRSSPPKLNLDLNADSLTNEQAISVVASLAEEAGSMVALSFFY 129

Query: 121 WAIGFPKFRHFMRLYIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMRN 180
           WAIGFPKFR+FMRLYI C MSL G  NLERAHEVV CM+  FAEIG+LKEA DM+++M+N
Sbjct: 130 WAIGFPKFRYFMRLYIFCAMSLFGNGNLERAHEVVHCMVRNFAEIGRLKEAADMVFEMQN 189

Query: 181 QGLVLTTR 189
           QGL+L+TR
Sbjct: 190 QGLMLSTR 197

[Close]

BLAST of Cla97C01G009700 vs. Swiss-Prot
Match: sp|P0C8Q3|PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana OX=3702 GN=At4g19890 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.5e-36
Identity = 87/165 (52.73%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 15  FFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSPVQTICSIVLQTYFR 74
           FF +L S    SS   S+P        P SSP           Q  V+++CS+V  +Y R
Sbjct: 27  FFFRLISSDHESS-DLSLP------SSPSSSPS----------QCLVKSVCSLVCTSYLR 86

Query: 75  QPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFYWAIGFPKFRHFMRL 134
           Q H+  SP ++NLD D +SLTHEQAI+VVASLASE GSMVAL FFYWA+GF KFRHFMRL
Sbjct: 87  QNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRL 146

Query: 135 YIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMR 180
           Y+V   SL+   NL++AHEV+ CM+  F+EIG+L EAV M+ DM+
Sbjct: 147 YLVTADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQ 174

[Close]

BLAST of Cla97C01G009700 vs. TAIR10
Match: AT4G19890.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-37
Identity = 87/165 (52.73%), Postives = 110/165 (66.67%), Query Frame = 0


Query: 15  FFQKLCSFQQRSSASASVPFFSSTHGHPISSPHXXXXXXXXXLQSPVQTICSIVLQTYFR 74
           FF +L S    SS   S+P        P SSP           Q  V+++CS+V  +Y R
Sbjct: 27  FFFRLISSDHESS-DLSLP------SSPSSSPS----------QCLVKSVCSLVCTSYLR 86

Query: 75  QPHLRFSPSKLNLDMDVDSLTHEQAISVVASLASEEGSMVALSFFYWAIGFPKFRHFMRL 134
           Q H+  SP ++NLD D +SLTHEQAI+VVASLASE GSMVAL FFYWA+GF KFRHFMRL
Sbjct: 87  QNHVVSSPHRVNLDFDANSLTHEQAITVVASLASESGSMVALCFFYWAVGFEKFRHFMRL 146

Query: 135 YIVCTMSLIGKCNLERAHEVVECMIGVFAEIGKLKEAVDMIYDMR 180
           Y+V   SL+   NL++AHEV+ CM+  F+EIG+L EAV M+ DM+
Sbjct: 147 YLVTADSLLANGNLQKAHEVMRCMLRNFSEIGRLNEAVGMVMDMQ 174

The following BLAST results are available for this feature:

BLAST of Cla97C01G009700 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66873.1	3.0e-81	83.85	hypothetical protein Csa_1G701980 [Cucumis sativus]	[more]
XP_004145475.2	3.0e-81	83.85	PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Cucumis sativu...	[more]
XP_008459042.1	9.8e-80	83.33	PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Cucumis melo]	[more]
XP_023541359.1	6.4e-71	79.47	pentatricopeptide repeat-containing protein At4g19890 [Cucurbita pepo subsp. pep...	[more]
XP_022994748.1	1.6e-69	78.19	pentatricopeptide repeat-containing protein At4g19890 [Cucurbita maxima]	[more]

BLAST of Cla97C01G009700 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LYL9\|A0A0A0LYL9_CUCSA	2.0e-81	83.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701980 PE=4 SV=1	[more]
tr\|A0A1S3CAH0\|A0A1S3CAH0_CUCME	6.5e-80	83.33	pentatricopeptide repeat-containing protein At4g19890 OS=Cucumis melo OX=3656 GN...	[more]
tr\|A0A2P5B7A6\|A0A2P5B7A6_PARAD	3.6e-46	71.72	Tetratricopeptide-like helical domain containing protein OS=Parasponia andersoni...	[more]
tr\|M5WK57\|M5WK57_PRUPE	6.1e-46	72.52	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015022m...	[more]
tr\|A0A251PIY1\|A0A251PIY1_PRUPE	5.2e-45	73.44	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G111800 PE=4 SV=1	[more]

BLAST of Cla97C01G009700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0C8Q3\|PP326_ARATH	3.5e-36	52.73	Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cla97C01G009700 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19890.1	1.9e-37	52.73	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G009700.1	Cla97C01G009700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 431..480 e-value: 2.0E-13 score: 50.2 coord: 361..410 e-value: 2.1E-19 score: 69.3 coord: 290..339 e-value: 6.4E-14 score: 51.8 coord: 220..268 e-value: 1.3E-10 score: 41.2 coord: 540..585 e-value: 7.9E-15 score: 54.7
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 505..537 e-value: 7.6E-6 score: 23.8 coord: 328..363 e-value: 1.6E-5 score: 22.8 coord: 540..573 e-value: 6.1E-11 score: 39.8 coord: 400..433 e-value: 9.9E-11 score: 39.1 coord: 295..327 e-value: 4.3E-9 score: 34.0 coord: 223..256 e-value: 3.2E-8 score: 31.2 coord: 434..457 e-value: 4.2E-6 score: 24.6 coord: 574..606 e-value: 3.9E-7 score: 27.8 coord: 364..398 e-value: 7.5E-11 score: 39.5
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 498..528 e-value: 2.4E-5 score: 23.8
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 157..183 e-value: 0.1 score: 12.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 502..536 score: 11.586
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 326..361 score: 10.205
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 362..396 score: 13.866
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 397..431 score: 12.562
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 537..571 score: 12.759
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 256..290 score: 9.405
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 572..606 score: 12.967
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 151..185 score: 7.344
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 432..466 score: 10.216
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 467..501 score: 9.46
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 639..673 score: 5.327
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 607..637 score: 5.064
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 291..325 score: 12.627
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 221..255 score: 11.235
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 186..220 score: 7.98
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 482..587 e-value: 5.7E-31 score: 109.3 coord: 153..271 e-value: 1.3E-23 score: 85.2 coord: 379..481 e-value: 2.9E-30 score: 107.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 272..378 e-value: 6.4E-30 score: 106.8 coord: 588..704 e-value: 5.4E-13 score: 51.2
None	No IPR available	PANTHER	PTHR24015:SF325	SUBFAMILY NOT NAMED	coord: 15..639
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 15..639
None	No IPR available	SUPERFAMILY	SSF81901	HCP-like	coord: 338..464 coord: 536..602

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G009700	Cla004616	Watermelon (97103) v1	wmwmbB247
Cla97C01G009700	Csa1G701980	Cucumber (Chinese Long) v2	cuwmbB011
Cla97C01G009700	MELO3C021752	Melon (DHL92) v3.5.1	mewmbB141
Cla97C01G009700	ClCG01G009470	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G009700	CSPI01G34460	Wild cucumber (PI 183967)	cpiwmbB011
Cla97C01G009700	Cucsa.003900	Cucumber (Gy14) v1	cgywmbB035
Cla97C01G009700	CmaCh18G005600	Cucurbita maxima (Rimu)	cmawmbB394
Cla97C01G009700	CmoCh18G005370	Cucurbita moschata (Rifu)	cmowmbB377
Cla97C01G009700	Lsi02G010500	Bottle gourd (USVL1VR-Ls)	lsiwmbB153
Cla97C01G009700	CsGy1G032930	Cucumber (Gy14) v2	cgybwmbB011
Cla97C01G009700	MELO3C021752.2	Melon (DHL92) v3.6.1	medwmbB131
Cla97C01G009700	Carg27046	Silver-seed gourd	carwmbB1007
Cla97C01G009700	CsaV3_1G046310	Cucumber (Chinese Long) v3	cucwmbB010
Cla97C01G009700	Bhi08G000730	Wax gourd	wgowmbB458

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G009700	Silver-seed gourd	carwmbB0121
Cla97C01G009700	Cucurbita maxima (Rimu)	cmawmbB213
Cla97C01G009700	Cucurbita moschata (Rifu)	cmowmbB195