Cla97C01G007740 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G007740
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Ileal sodium/bile acid cotransporter, putative
Location	Cla97Chr01 : 7879784 .. 7880281 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATGGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAACTCGTTCCCGAGAATCGCCCATTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

mRNA sequence

ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATGGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAACTCGTTCCCGAGAATCGCCCATTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

Coding sequence (CDS)

ATGGCTTCAACTTCACACCAAACCTCTTTAGATATGAATGCACTTTCCTCCTCCTTTAGCCCTACAATCAACCAAAGAAACTATGGAATCAGCATTTTCTCCACACCATCAGATTGTTTACCAATTTGCATTACAATGCTACAAAGCCCTCAAGCAACACCCAGTAGTAGCCCTCAAAATCTTGGCAAGACAATTCTTGGGCTTACTTTTCAAGCAATTTTGGCCTTGTTCATCAGCTCACCAACTTCTTCTCCTCCATTTTTGACTCATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGCTCTTTTCCTTCAAAACTCGTTCCCGAGAATCGCCCATTTGTTCGAAAAGATCGGTGCGCTTTTTGCTGCCATTGGTGTGTGTATCATAGCAAGTTTTCTTCTAGTCCATCAGAACTTTGCTTGGATATGTTGGTTGGCATGTGCCTTCTCCTTCATTGTCTTTGGTCTATCATTTAAGTAA

Protein sequence

MASTSHQTSLDMNALSSSFSPTINQRNYGISIFSTPSDCLPICITMLQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIAHLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK

Homology

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BLAST of Cla97C01G007740 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_5G137410 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 7.4e-47
Identity = 114/166 (68.67%), Postives = 124/166 (74.70%), Query Frame = 0


Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYGISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           MASTSHQTSLDM+A  SSF  TI+QRNYG+    TPS+CLP+ I M QSPQAT  SS Q 
Sbjct: 1   MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60

Query: 61  LGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIAHL 120
           LGK IL L+FQA+LALFIS                 V ISFAVSFAALFL NSFPR AHL
Sbjct: 61  LGKIILSLSFQAVLALFISXXXXXXXXXXXXXXXXXVFISFAVSFAALFLHNSFPRTAHL 120

Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of Cla97C01G007740 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_5G136870 [Cucumis sativus])

HSP 1 Score: 178.3 bits (451), Expect = 2.1e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYGISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           M S+S Q S+DMN L S  + +IN+RN  I       + LPICI M  +  A  S +  N
Sbjct: 1   MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60

Query: 61  LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIAHLF 120
           +G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF  +FLQ+ FPRIA LF
Sbjct: 61  VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120

Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of Cla97C01G007740 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 144.1 bits (362), Expect = 4.4e-31
Identity = 87/128 (67.97%), Postives = 97/128 (75.78%), Query Frame = 0


Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYGISIF------STPSDCLPICITMLQSPQATP 60
           MAST  QTS+DMNAL SSF   IN+RN GIS F      STPSDCLPICI M + P   P
Sbjct: 1   MASTPQQTSVDMNAL-SSFITAINERNLGISSFTWGGGTSTPSDCLPICIRMQRPP---P 60

Query: 61  SSSPQNLGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFP 120
           + S Q+LGKTILGLTFQA+LALFIS P+S P   T LFGAAVLISFAVSFA LFLQ ++P
Sbjct: 61  AKSSQSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYP 120

Query: 121 RIAHLFEK 123
           R+A LFEK
Sbjct: 121 RMALLFEK 124

[Close]

BLAST of Cla97C01G007740 vs. NCBI nr
Match: KGN49806.1 (hypothetical protein Csa_5G136900 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 2.0e-23
Identity = 86/170 (50.59%), Postives = 104/170 (61.18%), Query Frame = 0


Query: 1   MAST-SHQTSLDMNALSSSFSPTINQRNYGISIFS---TPSDCLPICITMLQSPQATPSS 60
           MA T  H+ SLDMN L+S      N RN GIS  +     SDCLPI I M Q P  +P +
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTN-RNPGISSCTWGGAASDCLPIYIKM-QRP--SPVN 60

Query: 61  SPQNLGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPR 120
           SPQ  G T L LTFQAI+ LF+S +P+SS P  + LF A +L SF  S+  + LQ  FP+
Sbjct: 61  SPQ-FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 121 IAHLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
            A L +  GALFAAIG CII S LL++ NF WICWLA       F +SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of Cla97C01G007740 vs. NCBI nr
Match: XP_008243769.1 (PREDICTED: uncharacterized protein LOC103341994 [Prunus mume])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 0


Query: 38  DCLPICITMLQ-SPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSP------PFL-- 97
           DCLPI +   Q   Q+  S +P +LGKT+LGLTFQAI+ L ++S    P      P L  
Sbjct: 75  DCLPIYLHGCQIEVQSYQSKAPLSLGKTVLGLTFQAIVGLTLASNPGQPDQDQDQPHLLP 134

Query: 98  THLFGAAVLISFAVSFAALFLQNSFPRIAHLFEKIGALFAAIGVCIIASFLLVHQNFAWI 157
            H+ G A++I+FA  F+A+FL  ++PR A L EKIG++ AA+G  ++ S  L    F WI
Sbjct: 135 LHMVGVAMVIAFAACFSAIFLTRAYPRAASLIEKIGSVSAALGFFLMTSIFL-SNIFIWI 194

Query: 158 CWLACAFSFIVFGLSF 165
           CWLACAFS + F L+F
Sbjct: 195 CWLACAFSLLAFTLAF 209

[Close]

BLAST of Cla97C01G007740 vs. TrEMBL
Match: tr|A0A0A0KJP2|A0A0A0KJP2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 4.9e-47
Identity = 114/166 (68.67%), Postives = 124/166 (74.70%), Query Frame = 0


Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYGISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           MASTSHQTSLDM+A  SSF  TI+QRNYG+    TPS+CLP+ I M QSPQAT  SS Q 
Sbjct: 1   MASTSHQTSLDMSAF-SSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQSPQATADSS-QK 60

Query: 61  LGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIAHL 120
           LGK IL L+FQA+LALFIS                 V ISFAVSFAALFL NSFPR AHL
Sbjct: 61  LGKIILSLSFQAVLALFISXXXXXXXXXXXXXXXXXVFISFAVSFAALFLHNSFPRTAHL 120

Query: 121 FEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           FEK+GALF+A GVC IASFLLVHQNFAWICW+AC FS IVF LSFK
Sbjct: 121 FEKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

[Close]

BLAST of Cla97C01G007740 vs. TrEMBL
Match: tr|A0A0A0KJN8|A0A0A0KJN8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.4e-41
Identity = 106/165 (64.24%), Postives = 123/165 (74.55%), Query Frame = 0


Query: 1   MASTSHQTSLDMNALSSSFSPTINQRNYGISIFSTPSDCLPICITMLQSPQATPSSSPQN 60
           M S+S Q S+DMN L S  + +IN+RN  I       + LPICI M  +  A  S +  N
Sbjct: 1   MESSSQQISIDMNHLYSLIT-SINERNPEI-------NGLPICIIMQTASPANSSKTENN 60

Query: 61  LGKTILGLTFQAILALFISSPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPRIAHLF 120
           +G TILGLTFQA+LALFI+S TSSPP LTHLFGAAVLISFAVSF  +FLQ+ FPRIA LF
Sbjct: 61  VGTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLF 120

Query: 121 EKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
           EKIGAL AAIGVCI+AS LL+HQNFAWI WLAC FS + F LSF+
Sbjct: 121 EKIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

[Close]

BLAST of Cla97C01G007740 vs. TrEMBL
Match: tr|A0A0A0KQ03|A0A0A0KQ03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23
Identity = 86/170 (50.59%), Postives = 104/170 (61.18%), Query Frame = 0


Query: 1   MAST-SHQTSLDMNALSSSFSPTINQRNYGISIFS---TPSDCLPICITMLQSPQATPSS 60
           MA T  H+ SLDMN L+S      N RN GIS  +     SDCLPI I M Q P  +P +
Sbjct: 1   MAETPPHEISLDMNKLNSLIFAVTN-RNPGISSCTWGGAASDCLPIYIKM-QRP--SPVN 60

Query: 61  SPQNLGKTILGLTFQAILALFIS-SPTSSPPFLTHLFGAAVLISFAVSFAALFLQNSFPR 120
           SPQ  G T L LTFQAI+ LF+S +P+SS P  + LF A +L SF  S+  + LQ  FP+
Sbjct: 61  SPQ-FGNTFLSLTFQAIVGLFLSLNPSSSSPLPSRLFAAVMLTSFIFSYDGVILQKPFPK 120

Query: 121 IAHLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACAFSFIVFGLSFK 166
            A L +  GALFAAIG CII S LL++ NF WICWLA       F +SFK
Sbjct: 121 TAQLLQTFGALFAAIGTCIIGS-LLLYPNFTWICWLAAGLILPAFIISFK 164

[Close]

BLAST of Cla97C01G007740 vs. TrEMBL
Match: tr|A0A061EGV0|A0A061EGV0_THECC (Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM_011398 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.6e-13
Identity = 49/126 (38.89%), Postives = 79/126 (62.70%), Query Frame = 0


Query: 38  DCLPICITMLQ-SPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFL--THLFGA 97
           DC+P+ I  L+   Q+     P +LGKTIL L+FQ ++AL +SS       +    +   
Sbjct: 78  DCIPLSINSLEIEMQSYQPRPPVSLGKTILSLSFQIVVALALSSSMGQTHHVLPIDIVKI 137

Query: 98  AVLISFAVSFAALFLQNSFPRIAHLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLACA 157
           +++++FA SF+ +FL++S+P++A++ E IG+L AA+G  I+ S  L   N  W+ WLACA
Sbjct: 138 SMIMAFAASFSGIFLRSSYPKMANIIENIGSLIAAVGFFIMTSIFL-PGNLYWVTWLACA 197

Query: 158 FSFIVF 161
           FS + F
Sbjct: 198 FSLLAF 202

[Close]

BLAST of Cla97C01G007740 vs. TrEMBL
Match: tr|A0A1R3HPA4|A0A1R3HPA4_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-10
Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 0


Query: 47  LQSPQATPSSSPQNLGKTILGLTFQAILALFISSPTSSPPFLT-HLFGAAVLISFAVSFA 106
           +QS Q  P+S+  NLGKTI+ LTFQ ++AL +S   S    L+  +   +++++FA SF+
Sbjct: 34  MQSYQQRPNSA--NLGKTIMSLTFQVVVALALSMGQSHHQLLSIQIVKVSMIMAFAASFS 93

Query: 107 ALFLQNSFPRIAHLFEKIGALFAAIGVCIIASFLLVHQNFAWICWLAC 154
            +FL+NS+P+ A + E  G++ AA+G  I+ S  L    F+W+ WLAC
Sbjct: 94  GIFLRNSYPKSARIVENTGSIAAAVGFFIMTSIFL-PVKFSWVAWLAC 138

The following BLAST results are available for this feature:

BLAST of Cla97C01G007740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49808.1	7.4e-47	68.67	hypothetical protein Csa_5G137410 [Cucumis sativus]	[more]
KGN49803.1	2.1e-41	64.24	hypothetical protein Csa_5G136870 [Cucumis sativus]	[more]
XP_022146444.1	4.4e-31	67.97	uncharacterized protein LOC111015658 [Momordica charantia]	[more]
KGN49806.1	2.0e-23	50.59	hypothetical protein Csa_5G136900 [Cucumis sativus]	[more]
XP_008243769.1	1.9e-18	46.32	PREDICTED: uncharacterized protein LOC103341994 [Prunus mume]	[more]

BLAST of Cla97C01G007740 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJP2\|A0A0A0KJP2_CUCSA	4.9e-47	68.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G137410 PE=4 SV=1	[more]
tr\|A0A0A0KJN8\|A0A0A0KJN8_CUCSA	1.4e-41	64.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136870 PE=4 SV=1	[more]
tr\|A0A0A0KQ03\|A0A0A0KQ03_CUCSA	1.3e-23	50.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G136900 PE=4 SV=1	[more]
tr\|A0A061EGV0\|A0A061EGV0_THECC	3.6e-13	38.89	Ileal sodium/bile acid cotransporter, putative OS=Theobroma cacao OX=3641 GN=TCM...	[more]
tr\|A0A1R3HPA4\|A0A1R3HPA4_9ROSI	1.3e-10	40.74	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_27768 PE=4 SV=1	[more]

BLAST of Cla97C01G007740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G007740 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G007740.1	Cla97C01G007740.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G007740	CmaCh04G021870	Cucurbita maxima (Rimu)	cmawmbB705
Cla97C01G007740	CsGy5G012690	Cucumber (Gy14) v2	cgybwmbB320

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G007740	Silver-seed gourd	carwmbB0501
Cla97C01G007740	Silver-seed gourd	carwmbB0858
Cla97C01G007740	Cucumber (Gy14) v1	cgywmbB642
Cla97C01G007740	Cucurbita maxima (Rimu)	cmawmbB289
Cla97C01G007740	Cucurbita moschata (Rifu)	cmowmbB271
Cla97C01G007740	Cucurbita moschata (Rifu)	cmowmbB676
Cla97C01G007740	Wild cucumber (PI 183967)	cpiwmbB350
Cla97C01G007740	Cucumber (Chinese Long) v3	cucwmbB352
Cla97C01G007740	Cucumber (Chinese Long) v2	cuwmbB337
Cla97C01G007740	Bottle gourd (USVL1VR-Ls)	lsiwmbB007
Cla97C01G007740	Melon (DHL92) v3.6.1	medwmbB008
Cla97C01G007740	Melon (DHL92) v3.5.1	mewmbB009
Cla97C01G007740	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G007740	Watermelon (97103) v1	wmwmbB236
Cla97C01G007740	Wax gourd	wgowmbB054